AT5G17810

WUSCHEL-related homeobox

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009573
Physical Location & Seq
Reverse (-)
5880424 .. 5884770
4347 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17810.1

Sequence Viewer

Length: 807 bp
ATGAATCAAGAAGGTGCTTCACATAGCCCATCCTCCACTTCCACCGAACCAGTCCGGGCACGTTGGTCACCTAAACCGGAGCAAATCTTGATACTCGAATCCATCTTCAACAGTGGTACTGTTAACCCACCAAAAGATGAAACGGTGAGGATAAGAAAGATGCTTGAGAAATTCGGTGCTGTGGGAGACGCAAACGTCTTCTACTGGTTTCAAAACCGACGGTCAAGATCTCGCCGGAGACACCGGCAGCTTTTAGCAGCCACCACCGCAGCCGCCACCTCCATAGGAGCTGAAGACCACCAGCACATGACGGCCATGAGCATGCATCAATATCCTTGCAGCAACAACGAGATTGATTTGGGGTTTGGAAGTTGTAGCAACTTATCAGCTAATTACTTCCTTAATGGATCGTCGTCATCTCAAATCCCTTCCTTTTTCCTCGGCCTCTCTTCTTCAAGTGGTGGGTGTGAGAACAACAATGGTATGGAGAATCTCTTCAAAATGTATGGCCATGAATCTGATCATAATCATCAGCAGCAGCATCATAGCTCAAATGCTGCATCAGTTTTAAACCCATCTGATCAAAACTCCAACTCCCAATACGAACAAGAAGGGTTTATGACGGTGTTTATAAACGGAGTTCCTATGGAAGTAACAAAAGGAGCAATAGACATGAAAACAATGTTCGGTGATGATTCGGTGTTACTTCATTCCTCTGGTCTTCCTCTTCCCACTGATGAGTTTGGTTTCTTGATGCATTCTTTACAACATGGACAAACTTATTTCCTGGTACCGAGACAGACATGA

Protein Analysis

268

Amino Acids

29.71

Weight (kDa)

6.09

Isoelectric Point (pI)

60.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 19 - 79 1.1e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03660 AT3G03660 AT3G03660 AT3G03660 AT5G17810 AT5G17810 AT5G17810
fragaria_vesca FvH4_1g29830
malus_domestica MD12G1012600.v1.1 MD14G1010400.v1.1
prunus_persica Prupe.7G016600_v2.0.a1
pyrus_communis pycom12g01010
rosa_chinensis RchiOBHm_Chr3g0495921
rosa_laevigata RLG00000022580
rosa_multiflora Rmu_sc0010892.1_g000017
rosa_roxburghii Rroxscaffold_6G00389910
rosa_rugosa Rorug03G0277600
rosa_samantha Rh3AG325000 Rh3BG361000 Rh3CG357300 Rh3DG360600
rosa_wichuraiana Rw3G028380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 632
AasI GACNNNNNNGTC 1 cut(s) 194
Acc65I GGTACC 1 cut(s) 790
AccB1I GGYRCC 1 cut(s) 790
AciI CCGC 2 cut(s) 267, 273
AclWI GGATC 1 cut(s) 415
AcoI YGGCCR 2 cut(s) 312, 508
AcsI RAATTY 1 cut(s) 170
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 2 cut(s) 118, 792
AgsI TTSAA 4 cut(s) 109, 212, 456, 499
AjnI CCWGG 1 cut(s) 786
AluBI AGCT 4 cut(s) 250, 290, 389, 549
AluI AGCT 4 cut(s) 250, 290, 389, 549
Alw26I GTCTC 3 cut(s) 180, 232, 790
AlwI GGATC 1 cut(s) 415
AoxI GGCC 3 cut(s) 312, 442, 508
ApeKI GCWGC 7 cut(s) 247, 257, 269, 339, 535, 538, 557
ApoI RAATTY 1 cut(s) 170
Asp700I GAANNNNTTC 1 cut(s) 494
Asp718I GGTACC 1 cut(s) 790
AsuC2I CCSGG 1 cut(s) 56
AsuHPI GGTGA 3 cut(s) 60, 157, 701
BaeGI GKGCMC 1 cut(s) 61
BalI TGGCCA 1 cut(s) 510
BanI GGYRCC 1 cut(s) 790
BbsI GAAGAC 3 cut(s) 190, 300, 713
BbvI GCAGC 7 cut(s) 259, 269, 281, 351, 544, 547, 550
BccI CCATC 3 cut(s) 37, 110, 583
BceAI ACGGC 1 cut(s) 327
BciT130I CCWGG 1 cut(s) 788
BclI TGATCA 2 cut(s) 520, 580
BcnI CCSGG 1 cut(s) 56
BcoDI GTCTC 3 cut(s) 180, 232, 790
BglII AGATCT 1 cut(s) 227
BisI GCNGC 8 cut(s) 248, 258, 270, 273, 340, 536, 539, 558
BlsI GCNGC 8 cut(s) 249, 259, 271, 274, 341, 537, 540, 559
Bme1390I CCNGG 2 cut(s) 56, 788
BmiI GGNNCC 1 cut(s) 792
BmrFI CCNGG 2 cut(s) 56, 788
BmsI GCATC 5 cut(s) 150, 334, 550, 569, 744
BpiI GAAGAC 3 cut(s) 190, 300, 713
BpuEI CTTGAG 1 cut(s) 185
BpuMI CCSGG 1 cut(s) 56
BsaBI GATNNNNATC 1 cut(s) 525
BsaJI CCNNGG 1 cut(s) 439
BsaWI WCCGGW 1 cut(s) 76
BsaXI ACNNNNNCTCC 2 cut(s) 578, 608
Bse118I RCCGGY 1 cut(s) 243
Bse1I ACTGG 2 cut(s) 50, 209
Bse8I GATNNNNATC 1 cut(s) 525
BseBI CCWGG 1 cut(s) 788
BseDI CCNNGG 1 cut(s) 439
BseGI GGATG 1 cut(s) 29
BseJI GATNNNNATC 1 cut(s) 525
BseNI ACTGG 2 cut(s) 50, 209
BseSI GKGCMC 1 cut(s) 61
BseXI GCAGC 7 cut(s) 259, 269, 281, 351, 544, 547, 550
BshFI GGCC 3 cut(s) 314, 444, 510
BshNI GGYRCC 1 cut(s) 790
BsiSI CCGG 4 cut(s) 55, 77, 235, 244
BsmAI GTCTC 3 cut(s) 180, 232, 790
BsmBI CGTCTC 1 cut(s) 180
BsmI GAATGC 1 cut(s) 757
BsnI GGCC 3 cut(s) 314, 444, 510
Bsp1286I GDGCHC 1 cut(s) 61
Bsp143I GATC 4 cut(s) 227, 407, 520, 580
BspACI CCGC 2 cut(s) 267, 273
BspANI GGCC 3 cut(s) 314, 444, 510
BspLI GGNNCC 1 cut(s) 792
BspPI GGATC 1 cut(s) 415
BspT107I GGYRCC 1 cut(s) 790
BsrFI RCCGGY 1 cut(s) 243
BsrI ACTGG 2 cut(s) 50, 209
BssAI RCCGGY 1 cut(s) 243
BssECI CCNNGG 1 cut(s) 439
BssMI GATC 4 cut(s) 227, 407, 520, 580
Bst2UI CCWGG 1 cut(s) 788
Bst4CI ACNGT 5 cut(s) 113, 121, 145, 222, 625
Bst6I CTCTTC 3 cut(s) 454, 500, 732
BstC8I GCNNGC 1 cut(s) 323
BstEII GGTNACC 1 cut(s) 66
BstF5I GGATG 1 cut(s) 29
BstKTI GATC 4 cut(s) 230, 410, 523, 583
BstMAI GTCTC 3 cut(s) 180, 232, 790
BstMBI GATC 4 cut(s) 227, 407, 520, 580
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNI CCWGG 1 cut(s) 788
BstNSI RCATGY 1 cut(s) 325
BstPI GGTNACC 1 cut(s) 66
BstSCI CCNGG 2 cut(s) 54, 786
BstSLI GKGCMC 1 cut(s) 61
BstV1I GCAGC 7 cut(s) 259, 269, 281, 351, 544, 547, 550
BstV2I GAAGAC 3 cut(s) 190, 300, 713
BstX2I RGATCY 1 cut(s) 227
BstYI RGATCY 1 cut(s) 227
BsuRI GGCC 3 cut(s) 314, 444, 510
BtsCI GGATG 1 cut(s) 29
BtsIMutI CAGTG 2 cut(s) 118, 732
Cac8I GCNNGC 1 cut(s) 323
Cfr10I RCCGGY 1 cut(s) 243
CseI GACGC 1 cut(s) 197
Csp6I GTAC 2 cut(s) 117, 791
CviAII CATG 7 cut(s) 307, 316, 322, 512, 673, 770, 804
CviQI GTAC 2 cut(s) 117, 791
DpnI GATC 4 cut(s) 229, 409, 522, 582
DpnII GATC 4 cut(s) 227, 407, 520, 580
DraI TTTAAA 1 cut(s) 570
DrdI GACNNNNNNGTC 1 cut(s) 194
DseDI GACNNNNNNGTC 1 cut(s) 194
EaeI YGGCCR 2 cut(s) 312, 508
Eam1104I CTCTTC 3 cut(s) 454, 500, 732
EarI CTCTTC 3 cut(s) 454, 500, 732
Eco57I CTGAAG 1 cut(s) 312
Eco91I GGTNACC 1 cut(s) 66
EcoO65I GGTNACC 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 786
EcoT22I ATGCAT 2 cut(s) 327, 759
Esp3I CGTCTC 1 cut(s) 180
FaeI CATG 7 cut(s) 310, 319, 325, 515, 676, 773, 807
FatI CATG 7 cut(s) 306, 315, 321, 511, 672, 769, 803
FbaI TGATCA 2 cut(s) 520, 580
Fnu4HI GCNGC 8 cut(s) 248, 258, 270, 273, 340, 536, 539, 558
FokI GGATG 1 cut(s) 16
Fsp4HI GCNGC 8 cut(s) 248, 258, 270, 273, 340, 536, 539, 558
GluI GCNGC 8 cut(s) 248, 258, 270, 273, 340, 536, 539, 558
HaeIII GGCC 3 cut(s) 314, 444, 510
HapII CCGG 4 cut(s) 55, 77, 235, 244
HgaI GACGC 1 cut(s) 197
Hin1II CATG 7 cut(s) 310, 319, 325, 515, 676, 773, 807
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 5 cut(s) 4, 98, 490, 515, 695
HpaI GTTAAC 1 cut(s) 124
HpaII CCGG 4 cut(s) 55, 77, 235, 244
HphI GGTGA 3 cut(s) 60, 157, 701
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 2 cut(s) 520, 580
Hpy188III TCNNGA 4 cut(s) 8, 88, 225, 751
Hpy8I GTNNAC 1 cut(s) 124
Hpy99I CGWCG 2 cut(s) 222, 415
HpyAV CCTTC 3 cut(s) 5, 438, 605
HpyCH4III ACNGT 5 cut(s) 113, 121, 145, 222, 625
HpyCH4IV ACGT 2 cut(s) 61, 195
HpyCH4V TGCA 4 cut(s) 325, 339, 560, 757
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpySE526I ACGT 2 cut(s) 61, 195
Hsp92II CATG 7 cut(s) 310, 319, 325, 515, 676, 773, 807
KpnI GGTACC 1 cut(s) 794
Ksp22I TGATCA 2 cut(s) 520, 580
KspAI GTTAAC 1 cut(s) 124
Kzo9I GATC 4 cut(s) 227, 407, 520, 580
LmnI GCTCC 3 cut(s) 79, 287, 662
Lsp1109I GCAGC 7 cut(s) 259, 269, 281, 351, 544, 547, 550
LweI GCATC 5 cut(s) 150, 334, 550, 569, 744
MaeII ACGT 2 cut(s) 61, 195
MaeIII GTNAC 3 cut(s) 66, 652, 702
MalI GATC 4 cut(s) 229, 409, 522, 582
MboI GATC 4 cut(s) 227, 407, 520, 580
MboII GAAGA 8 cut(s) 97, 190, 305, 441, 444, 487, 713, 719
MflI RGATCY 1 cut(s) 227
MhlI GDGCHC 1 cut(s) 61
MlsI TGGCCA 1 cut(s) 510
MluCI AATT 2 cut(s) 170, 391
MluNI TGGCCA 1 cut(s) 510
MmeI TCCRAC 1 cut(s) 615
MnlI CCTC 7 cut(s) 43, 141, 289, 449, 455, 724, 735
Mox20I TGGCCA 1 cut(s) 510
Mph1103I ATGCAT 2 cut(s) 327, 759
MroXI GAANNNNTTC 1 cut(s) 494
MscI TGGCCA 1 cut(s) 510
MseI TTAA 3 cut(s) 123, 402, 569
MslI CAYNNNNRTG 1 cut(s) 320
Msp20I TGGCCA 1 cut(s) 510
MspI CCGG 4 cut(s) 55, 77, 235, 244
MspR9I CCNGG 2 cut(s) 56, 788
Mva1269I GAATGC 1 cut(s) 757
MvaI CCWGG 1 cut(s) 788
MwoI GCNNNNNNNGC 1 cut(s) 266
NciI CCSGG 1 cut(s) 56
NdeII GATC 4 cut(s) 227, 407, 520, 580
NlaIII CATG 7 cut(s) 310, 319, 325, 515, 676, 773, 807
NlaIV GGNNCC 1 cut(s) 792
NmeAIII GCCGAG 1 cut(s) 420
NmuCI GTSAC 1 cut(s) 66
NsiI ATGCAT 2 cut(s) 327, 759
NspI RCATGY 1 cut(s) 325
PaeI GCATGC 1 cut(s) 325
PctI GAATGC 1 cut(s) 757
PdmI GAANNNNTTC 1 cut(s) 494
PfeI GAWTC 5 cut(s) 4, 98, 490, 515, 695
PkrI GCNGC 8 cut(s) 249, 259, 271, 274, 341, 537, 540, 559
PsiI TTATAA 1 cut(s) 632
Psp6I CCWGG 1 cut(s) 786
PspEI GGTNACC 1 cut(s) 66
PspGI CCWGG 1 cut(s) 786
PspN4I GGNNCC 1 cut(s) 792
PsuI RGATCY 1 cut(s) 227
RsaI GTAC 2 cut(s) 118, 792
RsaNI GTAC 2 cut(s) 117, 791
RseI CAYNNNNRTG 1 cut(s) 320
SaqAI TTAA 3 cut(s) 123, 402, 569
SatI GCNGC 8 cut(s) 248, 258, 270, 273, 340, 536, 539, 558
Sau3AI GATC 4 cut(s) 227, 407, 520, 580
ScrFI CCNGG 2 cut(s) 56, 788
SduI GDGCHC 1 cut(s) 61
SetI ASST 9 cut(s) 16, 64, 73, 198, 252, 281, 292, 391, 551
SfaNI GCATC 5 cut(s) 150, 334, 550, 569, 744
SmiMI CAYNNNNRTG 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
SphI GCATGC 1 cut(s) 325
Sse9I AATT 2 cut(s) 170, 391
SsiI CCGC 2 cut(s) 267, 273
StyD4I CCNGG 2 cut(s) 54, 786
TaaI ACNGT 5 cut(s) 113, 121, 145, 222, 625
TaiI ACGT 2 cut(s) 64, 198
TaqI TCGA 1 cut(s) 96
TasI AATT 2 cut(s) 170, 391
TauI GCSGC 1 cut(s) 275
TfiI GAWTC 5 cut(s) 4, 98, 490, 515, 695
Tru1I TTAA 3 cut(s) 123, 402, 569
Tru9I TTAA 3 cut(s) 123, 402, 569
TscAI CASTG 2 cut(s) 118, 739
TseFI GTSAC 1 cut(s) 66
TseI GCWGC 7 cut(s) 247, 257, 269, 339, 535, 538, 557
Tsp45I GTSAC 1 cut(s) 66
TspDTI ATGAA 5 cut(s) 17, 153, 528, 689, 698
TspGWI ACGGA 1 cut(s) 651
TspRI CASTG 2 cut(s) 118, 739
XapI RAATTY 1 cut(s) 170
XceI RCATGY 1 cut(s) 325
XmnI GAANNNNTTC 1 cut(s) 494
Zsp2I ATGCAT 2 cut(s) 327, 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.