Rh3AG325000

WUSCHEL-related homeobox

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0009573
Physical Location & Seq
Reverse (-)
45857960 .. 45860482
2523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG325000.1

Sequence Viewer

Length: 819 bp
ATGGAAGATCATCAAGGCCAAGGCGGAGGCCATGAGGCCAAAGAGCCAAACAGTCCAAACAGTAATGGCTCCTCAGAGAGAAGTGAACCAGTAAGGTCAAGGTGGATTCCGAAACCAGAGCAAATCTTAATTCTGGAGTCTATTTTCAATAGTGGAATGGTAAATCCTCCGAAAGAAGAGACCGTGAGGATAAGAAAACTGCTAGAGAAATTCGGGTCGGTTGGAGATGCAAACGTCTTTTACTGGTTCCAAAACCGACGGTCAAGATCCCGTCGCCGGCAACGGCAGTTGCAAGCGAGCCTTGAGCAGAGGAACCAAGCAGCAGCTGATCAACAAGTTGGTGGTGCAATTCAGTATGGAAGCTCTAGTACTACTAGTTTCAGTGCTCCACCACCACCAGCTATGGCTTTTGGACCTTCTACACCTTCGACTTTTGGTTCTAATTATGATCTTGTGGGCGATTCTTCTTCATCTTCTTGTGCTACTATGGCAGCAGATGATCACTTCTTTTCAGTTTCCGGTCAAATGGGTTTTCCAGATATCGAGCACAGTTCCTCCGGTGTAACGTCTGTGTTAGGTCCTTCAGATGCCTCAAGTTTGCACTTCCAATCTGGTGTGAATCTGATGATGACAGTATTTATTAATGGGGTTCCAACAGAAGTTCCAAGAGGGCCACTTGACATGAAAGCCATGTTTGGCACTCAAGATGTGTTGTTGGTTCATTCTTCTGGAGTTCCACTTCCAATCAATGAGTTTGGTTTCTTAGCCCACAGCTTGCAGCCTGGCGAAAGCTATTTCCTGGTTTCCAGATCAAATTAA

Protein Analysis

272

Amino Acids

29.4

Weight (kDa)

5.8

Isoelectric Point (pI)

67.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 32 - 92 2.6e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03660 AT3G03660 AT3G03660 AT3G03660 AT5G17810 AT5G17810 AT5G17810
fragaria_vesca FvH4_1g29830
malus_domestica MD12G1012600.v1.1 MD14G1010400.v1.1
prunus_persica Prupe.7G016600_v2.0.a1
pyrus_communis pycom12g01010
rosa_chinensis RchiOBHm_Chr3g0495921
rosa_laevigata RLG00000022580
rosa_multiflora Rmu_sc0010892.1_g000017
rosa_roxburghii Rroxscaffold_6G00389910
rosa_rugosa Rorug03G0277600
rosa_samantha Rh3AG325000 Rh3BG361000 Rh3CG357300 Rh3DG360600
rosa_wichuraiana Rw3G028380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 24
AclWI GGATC 1 cut(s) 261
AcsI RAATTY 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 567
AfaI GTAC 1 cut(s) 370
AfiI CCNNNNNNNGG 1 cut(s) 276
AgsI TTSAA 1 cut(s) 148
AhlI ACTAGT 1 cut(s) 374
AjnI CCWGG 2 cut(s) 781, 798
AluBI AGCT 5 cut(s) 326, 363, 401, 774, 792
AluI AGCT 5 cut(s) 326, 363, 401, 774, 792
Alw21I GWGCWC 2 cut(s) 388, 549
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 1 cut(s) 261
AlwNI CAGNNNCTG 1 cut(s) 326
AoxI GGCC 4 cut(s) 16, 28, 36, 671
ApeKI GCWGC 4 cut(s) 320, 323, 491, 778
ApoI RAATTY 1 cut(s) 209
AseI ATTAAT 1 cut(s) 642
AspS9I GGNCC 3 cut(s) 413, 578, 671
AvaII GGWCC 2 cut(s) 413, 578
BarI GAAGNNNNNNTAC 2 cut(s) 352, 384
Bbv12I GWGCWC 2 cut(s) 388, 549
BbvI GCAGC 4 cut(s) 332, 335, 503, 790
BceAI ACGGC 1 cut(s) 299
BciT130I CCWGG 2 cut(s) 783, 800
BclI TGATCA 2 cut(s) 328, 499
BcoDI GTCTC 1 cut(s) 173
BcuI ACTAGT 1 cut(s) 374
BfaI CTAG 3 cut(s) 203, 366, 375
BisI GCNGC 4 cut(s) 321, 324, 492, 779
BlsI GCNGC 4 cut(s) 322, 325, 493, 780
BmcAI AGTACT 1 cut(s) 370
Bme1390I CCNGG 2 cut(s) 783, 800
Bme18I GGWCC 2 cut(s) 413, 578
BmgT120I GGNCC 3 cut(s) 413, 578, 671
BmiI GGNNCC 4 cut(s) 70, 248, 314, 651
BmrFI CCNGG 2 cut(s) 783, 800
BmsI GCATC 2 cut(s) 217, 577
BpmI CTGGAG 2 cut(s) 155, 750
BpuEI CTTGAG 3 cut(s) 323, 577, 687
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 19
BsaWI WCCGGW 2 cut(s) 518, 557
BsaXI ACNNNNNCTCC 2 cut(s) 539, 569
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse118I RCCGGY 1 cut(s) 276
Bse1I ACTGG 2 cut(s) 89, 248
BseBI CCWGG 2 cut(s) 783, 800
BseDI CCNNGG 1 cut(s) 19
BseLI CCNNNNNNNGG 1 cut(s) 276
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 2 cut(s) 89, 248
BseRI GAGGAG 1 cut(s) 61
BseXI GCAGC 4 cut(s) 332, 335, 503, 790
BshFI GGCC 4 cut(s) 18, 30, 38, 673
BsiHKAI GWGCWC 2 cut(s) 388, 549
BsiSI CCGG 3 cut(s) 277, 519, 558
BslI CCNNNNNNNGG 1 cut(s) 276
BsmAI GTCTC 1 cut(s) 173
BsnI GGCC 4 cut(s) 18, 30, 38, 673
Bso31I GGTCTC 1 cut(s) 173
Bsp1286I GDGCHC 2 cut(s) 388, 549
Bsp143I GATC 6 cut(s) 7, 266, 328, 448, 499, 809
BspACI CCGC 1 cut(s) 24
BspANI GGCC 4 cut(s) 18, 30, 38, 673
BspCNI CTCAG 1 cut(s) 86
BspLI GGNNCC 4 cut(s) 70, 248, 314, 651
BspPI GGATC 1 cut(s) 261
BspTNI GGTCTC 1 cut(s) 173
BsrFI RCCGGY 1 cut(s) 276
BsrI ACTGG 2 cut(s) 89, 248
BssAI RCCGGY 1 cut(s) 276
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 6 cut(s) 7, 266, 328, 448, 499, 809
BssT1I CCWWGG 1 cut(s) 19
Bst2UI CCWGG 2 cut(s) 783, 800
Bst4CI ACNGT 6 cut(s) 53, 62, 184, 261, 551, 634
Bst6I CTCTTC 1 cut(s) 171
BstC8I GCNNGC 4 cut(s) 278, 294, 298, 776
BstDEI CTNAG 2 cut(s) 73, 763
BstKTI GATC 6 cut(s) 10, 269, 331, 451, 502, 812
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 6 cut(s) 7, 266, 328, 448, 499, 809
BstMWI GCNNNNNNNGC 1 cut(s) 488
BstNI CCWGG 2 cut(s) 783, 800
BstSCI CCNGG 2 cut(s) 781, 798
BstV1I GCAGC 4 cut(s) 332, 335, 503, 790
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
BsuRI GGCC 4 cut(s) 18, 30, 38, 673
BtsIMutI CAGTG 1 cut(s) 388
Cac8I GCNNGC 4 cut(s) 278, 294, 298, 776
CaiI CAGNNNCTG 1 cut(s) 326
Cfr10I RCCGGY 1 cut(s) 276
Cfr13I GGNCC 3 cut(s) 413, 578, 671
Csp6I GTAC 1 cut(s) 369
CviAII CATG 3 cut(s) 32, 682, 691
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 2 cut(s) 73, 763
DpnI GATC 6 cut(s) 9, 268, 330, 450, 501, 811
DpnII GATC 6 cut(s) 7, 266, 328, 448, 499, 809
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
EciI GGCGGA 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 19
Eco31I GGTCTC 1 cut(s) 173
Eco32I GATATC 1 cut(s) 541
Eco47I GGWCC 2 cut(s) 413, 578
Eco57I CTGAAG 1 cut(s) 567
EcoO109I RGGNCCY 1 cut(s) 578
EcoRII CCWGG 2 cut(s) 781, 798
EcoRV GATATC 1 cut(s) 541
EcoT14I CCWWGG 1 cut(s) 19
ErhI CCWWGG 1 cut(s) 19
FaeI CATG 3 cut(s) 35, 685, 694
FaiI YATR 7 cut(s) 33, 357, 404, 447, 488, 683, 692
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FatI CATG 3 cut(s) 31, 681, 690
FbaI TGATCA 2 cut(s) 328, 499
Fnu4HI GCNGC 4 cut(s) 321, 324, 492, 779
Fsp4HI GCNGC 4 cut(s) 321, 324, 492, 779
FspBI CTAG 3 cut(s) 203, 366, 375
GluI GCNGC 4 cut(s) 321, 324, 492, 779
GsuI CTGGAG 2 cut(s) 155, 750
HaeIII GGCC 4 cut(s) 18, 30, 38, 673
HapII CCGG 3 cut(s) 277, 519, 558
Hin1II CATG 3 cut(s) 35, 685, 694
HinfI GANTC 4 cut(s) 106, 137, 461, 619
HpaII CCGG 3 cut(s) 277, 519, 558
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 5 cut(s) 76, 111, 171, 586, 624
Hpy188III TCNNGA 6 cut(s) 134, 264, 536, 704, 729, 807
Hpy8I GTNNAC 1 cut(s) 86
Hpy99I CGWCG 2 cut(s) 261, 276
HpyAV CCTTC 3 cut(s) 426, 435, 591
HpyCH4III ACNGT 6 cut(s) 53, 62, 184, 261, 551, 634
HpyCH4IV ACGT 2 cut(s) 234, 566
HpyCH4V TGCA 5 cut(s) 230, 292, 347, 601, 778
HpyF10VI GCNNNNNNNGC 1 cut(s) 488
HpyF3I CTNAG 2 cut(s) 73, 763
HpySE526I ACGT 2 cut(s) 234, 566
Hsp92II CATG 3 cut(s) 35, 685, 694
KroI GCCGGC 1 cut(s) 276
KroNI GCCGGC 1 cut(s) 278
Ksp22I TGATCA 2 cut(s) 328, 499
Kzo9I GATC 6 cut(s) 7, 266, 328, 448, 499, 809
LmnI GCTCC 2 cut(s) 74, 391
Lsp1109I GCAGC 4 cut(s) 332, 335, 503, 790
LweI GCATC 2 cut(s) 217, 577
MaeI CTAG 3 cut(s) 203, 366, 375
MaeII ACGT 2 cut(s) 234, 566
MaeIII GTNAC 1 cut(s) 562
MalI GATC 6 cut(s) 9, 268, 330, 450, 501, 811
MboI GATC 6 cut(s) 7, 266, 328, 448, 499, 809
MboII GAAGA 6 cut(s) 17, 188, 456, 459, 465, 717
MflI RGATCY 1 cut(s) 266
MhlI GDGCHC 2 cut(s) 388, 549
MluCI AATT 5 cut(s) 129, 209, 348, 442, 814
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 2 cut(s) 202, 677
MnlI CCTC 9 cut(s) 20, 28, 82, 177, 180, 303, 565, 601, 662
MroNI GCCGGC 1 cut(s) 276
MseI TTAA 3 cut(s) 128, 642, 817
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 3 cut(s) 277, 519, 558
MspR9I CCNGG 2 cut(s) 783, 800
MvaI CCWGG 2 cut(s) 783, 800
MwoI GCNNNNNNNGC 1 cut(s) 488
NaeI GCCGGC 1 cut(s) 278
NdeII GATC 6 cut(s) 7, 266, 328, 448, 499, 809
NgoMIV GCCGGC 1 cut(s) 276
NlaIII CATG 3 cut(s) 35, 685, 694
NlaIV GGNNCC 4 cut(s) 70, 248, 314, 651
PdiI GCCGGC 1 cut(s) 278
PfeI GAWTC 3 cut(s) 106, 461, 619
PkrI GCNGC 4 cut(s) 322, 325, 493, 780
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
PpuMI RGGWCCY 1 cut(s) 578
PshBI ATTAAT 1 cut(s) 642
Psp5II RGGWCCY 1 cut(s) 578
Psp6I CCWGG 2 cut(s) 781, 798
PspGI CCWGG 2 cut(s) 781, 798
PspN4I GGNNCC 4 cut(s) 70, 248, 314, 651
PspPI GGNCC 3 cut(s) 413, 578, 671
PspPPI RGGWCCY 1 cut(s) 578
PstNI CAGNNNCTG 1 cut(s) 326
PsuI RGATCY 1 cut(s) 266
PvuII CAGCTG 1 cut(s) 326
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
SaqAI TTAA 3 cut(s) 128, 642, 817
SatI GCNGC 4 cut(s) 321, 324, 492, 779
Sau3AI GATC 6 cut(s) 7, 266, 328, 448, 499, 809
Sau96I GGNCC 3 cut(s) 413, 578, 671
ScaI AGTACT 1 cut(s) 370
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 2 cut(s) 783, 800
SduI GDGCHC 2 cut(s) 388, 549
SfaNI GCATC 2 cut(s) 217, 577
SinI GGWCC 2 cut(s) 413, 578
SmlI CTYRAG 3 cut(s) 302, 592, 702
SmoI CTYRAG 3 cut(s) 302, 592, 702
SpeI ACTAGT 1 cut(s) 374
Sse9I AATT 5 cut(s) 129, 209, 348, 442, 814
SsiI CCGC 1 cut(s) 24
SspMI CTAG 3 cut(s) 203, 366, 375
StyD4I CCNGG 2 cut(s) 781, 798
StyI CCWWGG 1 cut(s) 19
TaaI ACNGT 6 cut(s) 53, 62, 184, 261, 551, 634
TaiI ACGT 2 cut(s) 237, 569
TaqI TCGA 2 cut(s) 428, 543
TasI AATT 5 cut(s) 129, 209, 348, 442, 814
TatI WGTACW 1 cut(s) 368
TfiI GAWTC 3 cut(s) 106, 461, 619
Tru1I TTAA 3 cut(s) 128, 642, 817
Tru9I TTAA 3 cut(s) 128, 642, 817
TscAI CASTG 1 cut(s) 388
TseI GCWGC 4 cut(s) 320, 323, 491, 778
TspDTI ATGAA 3 cut(s) 459, 698, 710
TspRI CASTG 1 cut(s) 388
VpaK11BI GGWCC 2 cut(s) 413, 578
VspI ATTAAT 1 cut(s) 642
XapI RAATTY 1 cut(s) 209
XspI CTAG 3 cut(s) 203, 366, 375
ZrmI AGTACT 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.