Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010892.1

Orthogroup ID

OG0009573

Physical Location & Seq

Genomic Coordinates Reverse (-)

83618 .. 87783

Gene Structure 4166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010892.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

atggaagatcatcaaggtcaggaggccaaagagccaaacagtccaaacagtaatggctcctcagagagaagtgaaccagtaaggtcaaggtggattccgaaaccagagcaaatcctaattctggagtctattttcaatagtggaatggtaaatcctccgaaagaagagaccgtgaggataagaaaactgctagagaaattcgggtcggttggagatgcaaacgtcttttactggttccaaaaccgacggtcaagatcccgtcgccgccaacggcagttgcaagccagccttgagcagaggaaccaagcagcagctgatcaacaagttggtggtgcaattcagtatggaagctctagtactactataatggaagatcatcaaggccaggaggccaaagagccaaacagtccaaacagtaatggctcctcagagagaagtgaaccagtaaggtcaaggtggattccgaaaccagagcaaatcctaattctggagtctattttcaatagtggaatggtaaatcctccgaaagaagagaccgtgaggataagaaaactgctagagaaattcgggtcggttggagatgcaaacgtcttttactggttccaaaaccgacggtcaagatcccgtcgccgccaacggcagttgcaagccagccttgagcagaggaaccaagaagcagctgatcaacaagttggtggtgcaattcagtatggaagctctagtactactagtttcagtgctccaccaccaccaccaccagctatggcttttggagcttctacacctttgacttttggctctaattatgatcttgtgggcgattcttcttcatcttcttgtgctgctatggcaacagatgatcacttcttttcagtttccggtcaaatgggttttccagatattgagcacagttcctccggtgtaacgtctgtgttaggtccttcagatgcctcaagtttgcacttccaatccggtgtgaatctgatgatgacagtatttattaatggggttccaacagaagttccaagagggccacttgacatgaaagccatgtttggcactcaagatgtgttgttggttcattcttctggagttccacttccaatcaatgagtttggtttcttagcccacagcttgcagcctggtgaaagctatttcctgaatatgggcgagatagggaaatggaggaatgtaatatttgatgaaactgcatggcgagtgtacgtggactcctcctccgaaaagaagcaacttggactccagaccgaccaatataaccaatccacaactgacggatgttctaagaaaaacattaaggcgcgtccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048364 GO:0048731 GO:0048830 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

442

Amino Acids

48.99

Weight (kDa)

6.69

Isoelectric Point (pI)

69.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03660 AT3G03660 AT3G03660 AT3G03660 AT5G17810 AT5G17810 AT5G17810
fragaria_vesca	FvH4_1g29830
malus_domestica	MD12G1012600.v1.1 MD14G1010400.v1.1
prunus_persica	Prupe.7G016600_v2.0.a1
pyrus_communis	pycom12g01010
rosa_chinensis	RchiOBHm_Chr3g0495921
rosa_laevigata	RLG00000022580
rosa_multiflora	Rmu_sc0010892.1_g000017
rosa_roxburghii	Rroxscaffold_6G00389910
rosa_rugosa	Rorug03G0277600
rosa_samantha	Rh3AG325000 Rh3BG361000 Rh3CG357300 Rh3DG360600
rosa_wichuraiana	Rw3G028380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1321
AciI	CCGC	2 cut(s)	265, 631
AclWI	GGATC	2 cut(s)	249, 615
AcsI	RAATTY	2 cut(s)	197, 563
AcuI	CTGAAG	1 cut(s)	927
AfaI	GTAC	3 cut(s)	358, 724, 1223
AfiI	CCNNNNNNNGG	3 cut(s)	121, 487, 1165
AgsI	TTSAA	2 cut(s)	136, 502
AhlI	ACTAGT	1 cut(s)	728
AjnI	CCWGG	2 cut(s)	384, 1141
AluBI	AGCT	8 cut(s)	314, 351, 680, 717, 761, 776, 1134, 1152
AluI	AGCT	8 cut(s)	314, 351, 680, 717, 761, 776, 1134, 1152
Alw21I	GWGCWC	2 cut(s)	742, 909
Alw26I	GTCTC	2 cut(s)	161, 527
AlwI	GGATC	2 cut(s)	249, 615
AlwNI	CAGNNNCTG	1 cut(s)	314
AoxI	GGCC	4 cut(s)	24, 382, 390, 1031
ApeKI	GCWGC	5 cut(s)	308, 311, 677, 842, 1138
ApoI	RAATTY	2 cut(s)	197, 563
AseI	ATTAAT	1 cut(s)	1002
AspLEI	GCGC	1 cut(s)	1321
AspS9I	GGNCC	2 cut(s)	938, 1031
AsuHPI	GGTGA	1 cut(s)	1157
AvaII	GGWCC	1 cut(s)	938
BarI	GAAGNNNNNNTAC	4 cut(s)	340, 372, 706, 738
Bbv12I	GWGCWC	2 cut(s)	742, 909
BbvI	GCAGC	5 cut(s)	320, 323, 689, 829, 1150
BceAI	ACGGC	2 cut(s)	287, 653
BciT130I	CCWGG	2 cut(s)	386, 1143
BclI	TGATCA	3 cut(s)	316, 682, 859
BcoDI	GTCTC	2 cut(s)	161, 527
BcuI	ACTAGT	1 cut(s)	728
BfaI	CTAG	5 cut(s)	191, 354, 557, 720, 729
BisI	GCNGC	7 cut(s)	265, 309, 312, 631, 678, 843, 1139
BlsI	GCNGC	7 cut(s)	266, 310, 313, 632, 679, 844, 1140
BmcAI	AGTACT	2 cut(s)	358, 724
Bme1390I	CCNGG	2 cut(s)	386, 1143
Bme18I	GGWCC	1 cut(s)	938
BmgT120I	GGNCC	2 cut(s)	938, 1031
BmiI	GGNNCC	7 cut(s)	58, 236, 302, 424, 602, 668, 1011
BmrFI	CCNGG	2 cut(s)	386, 1143
BmsI	GCATC	3 cut(s)	205, 571, 937
BpmI	CTGGAG	4 cut(s)	143, 509, 1110, 1244
BpuEI	CTTGAG	4 cut(s)	311, 677, 937, 1047
BsaAI	YACGTR	1 cut(s)	1225
BsaI	GGTCTC	2 cut(s)	161, 527
BsaWI	WCCGGW	3 cut(s)	878, 917, 971
BsaXI	ACNNNNNCTCC	8 cut(s)	899, 929, 1214, 1220, 1242, 1244, 1250, 1272
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 487, 1165
Bse1I	ACTGG	4 cut(s)	77, 236, 443, 602
BseBI	CCWGG	2 cut(s)	386, 1143
BseGI	GGATG	1 cut(s)	1301
BseLI	CCNNNNNNNGG	3 cut(s)	121, 487, 1165
BseMII	CTCAG	2 cut(s)	75, 441
BseNI	ACTGG	4 cut(s)	77, 236, 443, 602
BseRI	GAGGAG	4 cut(s)	49, 415, 1222, 1225
BseXI	GCAGC	5 cut(s)	320, 323, 689, 829, 1150
Bsh1236I	CGCG	1 cut(s)	1321
BshFI	GGCC	4 cut(s)	26, 384, 392, 1033
BsiHKAI	GWGCWC	2 cut(s)	742, 909
BsiSI	CCGG	3 cut(s)	879, 918, 972
BslI	CCNNNNNNNGG	3 cut(s)	121, 487, 1165
BsmAI	GTCTC	2 cut(s)	161, 527
BsnI	GGCC	4 cut(s)	26, 384, 392, 1033
Bso31I	GGTCTC	2 cut(s)	161, 527
Bsp1286I	GDGCHC	2 cut(s)	742, 909
Bsp143I	GATC	8 cut(s)	7, 254, 316, 373, 620, 682, 808, 859
BspACI	CCGC	2 cut(s)	265, 631
BspANI	GGCC	4 cut(s)	26, 384, 392, 1033
BspCNI	CTCAG	2 cut(s)	74, 440
BspFNI	CGCG	1 cut(s)	1321
BspLI	GGNNCC	7 cut(s)	58, 236, 302, 424, 602, 668, 1011
BspPI	GGATC	2 cut(s)	249, 615
BspTNI	GGTCTC	2 cut(s)	161, 527
BsrI	ACTGG	4 cut(s)	77, 236, 443, 602
BssMI	GATC	8 cut(s)	7, 254, 316, 373, 620, 682, 808, 859
Bst2UI	CCWGG	2 cut(s)	386, 1143
Bst6I	CTCTTC	2 cut(s)	159, 525
BstBAI	YACGTR	1 cut(s)	1225
BstC8I	GCNNGC	5 cut(s)	282, 286, 648, 652, 1136
BstDEI	CTNAG	4 cut(s)	61, 427, 1123, 1302
BstF5I	GGATG	1 cut(s)	1301
BstFNI	CGCG	1 cut(s)	1321
BstHHI	GCGC	1 cut(s)	1321
BstKTI	GATC	8 cut(s)	10, 257, 319, 376, 623, 685, 811, 862
BstMAI	GTCTC	2 cut(s)	161, 527
BstMBI	GATC	8 cut(s)	7, 254, 316, 373, 620, 682, 808, 859
BstMWI	GCNNNNNNNGC	2 cut(s)	773, 848
BstNI	CCWGG	2 cut(s)	386, 1143
BstSCI	CCNGG	2 cut(s)	384, 1141
BstUI	CGCG	1 cut(s)	1321
BstV1I	GCAGC	5 cut(s)	320, 323, 689, 829, 1150
BstX2I	RGATCY	2 cut(s)	254, 620
BstYI	RGATCY	2 cut(s)	254, 620
BsuRI	GGCC	4 cut(s)	26, 384, 392, 1033
BtsCI	GGATG	1 cut(s)	1301
BtsIMutI	CAGTG	1 cut(s)	742
Cac8I	GCNNGC	5 cut(s)	282, 286, 648, 652, 1136
CaiI	CAGNNNCTG	1 cut(s)	314
CfoI	GCGC	1 cut(s)	1321
Cfr13I	GGNCC	2 cut(s)	938, 1031
CseI	GACGC	1 cut(s)	1310
Csp6I	GTAC	3 cut(s)	357, 723, 1222
CviAII	CATG	3 cut(s)	1042, 1051, 1212
CviQI	GTAC	3 cut(s)	357, 723, 1222
DdeI	CTNAG	4 cut(s)	61, 427, 1123, 1302
DpnI	GATC	8 cut(s)	9, 256, 318, 375, 622, 684, 810, 861
DpnII	GATC	8 cut(s)	7, 254, 316, 373, 620, 682, 808, 859
Eam1104I	CTCTTC	2 cut(s)	159, 525
EarI	CTCTTC	2 cut(s)	159, 525
Eco31I	GGTCTC	2 cut(s)	161, 527
Eco47I	GGWCC	1 cut(s)	938
Eco57I	CTGAAG	1 cut(s)	927
EcoO109I	RGGNCCY	1 cut(s)	938
EcoRII	CCWGG	2 cut(s)	384, 1141
FaeI	CATG	3 cut(s)	1045, 1054, 1215
FalI	AAGNNNNNCTT	4 cut(s)	273, 305, 639, 671
FatI	CATG	3 cut(s)	1041, 1050, 1211
FbaI	TGATCA	3 cut(s)	316, 682, 859
Fnu4HI	GCNGC	7 cut(s)	265, 309, 312, 631, 678, 843, 1139
FokI	GGATG	1 cut(s)	1308
Fsp4HI	GCNGC	7 cut(s)	265, 309, 312, 631, 678, 843, 1139
FspBI	CTAG	5 cut(s)	191, 354, 557, 720, 729
GlaI	GCGC	1 cut(s)	1320
GluI	GCNGC	7 cut(s)	265, 309, 312, 631, 678, 843, 1139
GsuI	CTGGAG	4 cut(s)	143, 509, 1110, 1244
HaeIII	GGCC	4 cut(s)	26, 384, 392, 1033
HapII	CCGG	3 cut(s)	879, 918, 972
HgaI	GACGC	1 cut(s)	1310
HhaI	GCGC	1 cut(s)	1321
Hin1II	CATG	3 cut(s)	1045, 1054, 1215
Hin6I	GCGC	1 cut(s)	1319
HinP1I	GCGC	1 cut(s)	1319
HinfI	GANTC	8 cut(s)	94, 125, 460, 491, 821, 979, 1229, 1257
HpaII	CCGG	3 cut(s)	879, 918, 972
HphI	GGTGA	1 cut(s)	1157
Hpy166II	GTNNAC	4 cut(s)	74, 440, 1222, 1228
Hpy188I	TCNGA	9 cut(s)	64, 99, 159, 430, 465, 525, 946, 984, 1240
Hpy8I	GTNNAC	4 cut(s)	74, 440, 1222, 1228
Hpy99I	CGWCG	4 cut(s)	249, 264, 615, 630
HpyAV	CCTTC	1 cut(s)	951
HpyCH4IV	ACGT	4 cut(s)	222, 588, 926, 1224
HpyCH4V	TGCA	9 cut(s)	218, 280, 335, 584, 646, 701, 961, 1138, 1211
HpyF10VI	GCNNNNNNNGC	2 cut(s)	773, 848
HpyF3I	CTNAG	4 cut(s)	61, 427, 1123, 1302
HpySE526I	ACGT	4 cut(s)	222, 588, 926, 1224
Hsp92II	CATG	3 cut(s)	1045, 1054, 1215
HspAI	GCGC	1 cut(s)	1319
Ksp22I	TGATCA	3 cut(s)	316, 682, 859
Kzo9I	GATC	8 cut(s)	7, 254, 316, 373, 620, 682, 808, 859
LmnI	GCTCC	4 cut(s)	62, 428, 745, 773
Lsp1109I	GCAGC	5 cut(s)	320, 323, 689, 829, 1150
LweI	GCATC	3 cut(s)	205, 571, 937
MaeI	CTAG	5 cut(s)	191, 354, 557, 720, 729
MaeII	ACGT	4 cut(s)	222, 588, 926, 1224
MaeIII	GTNAC	1 cut(s)	922
MalI	GATC	8 cut(s)	9, 256, 318, 375, 622, 684, 810, 861
MboI	GATC	8 cut(s)	7, 254, 316, 373, 620, 682, 808, 859
MboII	GAAGA	8 cut(s)	17, 176, 383, 542, 816, 819, 825, 1077
MflI	RGATCY	2 cut(s)	254, 620
MhlI	GDGCHC	2 cut(s)	742, 909
MluCI	AATT	7 cut(s)	117, 197, 336, 483, 563, 702, 802
MlyI	GAGTC	4 cut(s)	134, 500, 1223, 1251
MmeI	TCCRAC	3 cut(s)	190, 556, 1037
MseI	TTAA	2 cut(s)	1002, 1314
MspA1I	CMGCKG	2 cut(s)	314, 680
MspI	CCGG	3 cut(s)	879, 918, 972
MspR9I	CCNGG	2 cut(s)	386, 1143
MvaI	CCWGG	2 cut(s)	386, 1143
MvnI	CGCG	1 cut(s)	1321
MwoI	GCNNNNNNNGC	2 cut(s)	773, 848
NdeII	GATC	8 cut(s)	7, 254, 316, 373, 620, 682, 808, 859
NlaIII	CATG	3 cut(s)	1045, 1054, 1215
NlaIV	GGNNCC	7 cut(s)	58, 236, 302, 424, 602, 668, 1011
PfeI	GAWTC	4 cut(s)	94, 460, 821, 979
PkrI	GCNGC	7 cut(s)	266, 310, 313, 632, 679, 844, 1140
PleI	GAGTC	4 cut(s)	133, 499, 1223, 1251
PpsI	GAGTC	4 cut(s)	133, 499, 1223, 1251
Ppu21I	YACGTR	1 cut(s)	1225
PpuMI	RGGWCCY	1 cut(s)	938
PshBI	ATTAAT	1 cut(s)	1002
Psp5II	RGGWCCY	1 cut(s)	938
Psp6I	CCWGG	2 cut(s)	384, 1141
PspGI	CCWGG	2 cut(s)	384, 1141
PspN4I	GGNNCC	7 cut(s)	58, 236, 302, 424, 602, 668, 1011
PspPI	GGNCC	2 cut(s)	938, 1031
PspPPI	RGGWCCY	1 cut(s)	938
PstNI	CAGNNNCTG	1 cut(s)	314
PsuI	RGATCY	2 cut(s)	254, 620
PvuII	CAGCTG	2 cut(s)	314, 680
RsaI	GTAC	3 cut(s)	358, 724, 1223
RsaNI	GTAC	3 cut(s)	357, 723, 1222
SaqAI	TTAA	2 cut(s)	1002, 1314
SatI	GCNGC	7 cut(s)	265, 309, 312, 631, 678, 843, 1139
Sau3AI	GATC	8 cut(s)	7, 254, 316, 373, 620, 682, 808, 859
Sau96I	GGNCC	2 cut(s)	938, 1031
ScaI	AGTACT	2 cut(s)	358, 724
SchI	GAGTC	4 cut(s)	134, 500, 1223, 1251
ScrFI	CCNGG	2 cut(s)	386, 1143
SduI	GDGCHC	2 cut(s)	742, 909
SfaNI	GCATC	3 cut(s)	205, 571, 937
SinI	GGWCC	1 cut(s)	938
SmlI	CTYRAG	4 cut(s)	290, 656, 952, 1062
SmoI	CTYRAG	4 cut(s)	290, 656, 952, 1062
SpeI	ACTAGT	1 cut(s)	728
Sse9I	AATT	7 cut(s)	117, 197, 336, 483, 563, 702, 802
SsiI	CCGC	2 cut(s)	265, 631
SspI	AATATT	1 cut(s)	1197
SspMI	CTAG	5 cut(s)	191, 354, 557, 720, 729
StyD4I	CCNGG	2 cut(s)	384, 1141
TaiI	ACGT	4 cut(s)	225, 591, 929, 1227
TaqII	GACCGA	1 cut(s)	1280
TasI	AATT	7 cut(s)	117, 197, 336, 483, 563, 702, 802
TatI	WGTACW	2 cut(s)	356, 722
TauI	GCSGC	2 cut(s)	267, 633
TfiI	GAWTC	4 cut(s)	94, 460, 821, 979
Tru1I	TTAA	2 cut(s)	1002, 1314
Tru9I	TTAA	2 cut(s)	1002, 1314
TscAI	CASTG	1 cut(s)	742
TseI	GCWGC	5 cut(s)	308, 311, 677, 842, 1138
TspDTI	ATGAA	4 cut(s)	819, 1058, 1070, 1218
TspGWI	ACGGA	1 cut(s)	1308
TspRI	CASTG	1 cut(s)	742
VpaK11BI	GGWCC	1 cut(s)	938
VspI	ATTAAT	1 cut(s)	1002
XapI	RAATTY	2 cut(s)	197, 563
XspI	CTAG	5 cut(s)	191, 354, 557, 720, 729
ZrmI	AGTACT	2 cut(s)	358, 724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.