Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0009573

Physical Location & Seq

Genomic Coordinates Reverse (-)

43724074 .. 43726198

Gene Structure 2125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG361000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGTAAATCCTCCGAAAGAAGAGACCGTGAGGATAAGAAAACTGCTAGAGAAATTCGGGTCGGTTGGAGATGCAAACGTCTTTTACTGGTTCCAAAACCGACGGTCAAGATCCCGTCGCCGCCAACGGCAGTTGCAAGCCAGCCATGAGCAGAGGAACCAAGCAGCAGCTGATCAACAAGTTGGTGGTGCAATTCAGTATGGAAGCTCTAGTACTACTAGTTTCAGTGCTCCACCACCACCACCACCAGCTATGGCTTTTGGAGCTTCTACACCTTCGACTTTTGGCTCTAATTATGATCTTGTGGGCGATTCTTCTTCATCTTCTTGTGCTGCTATGGCAACAGATGATCACTTCTTTTCAGTTTCCGGTCAAATGGGTTTTCCAGATATTGAGCACAGTTCCTCCGGTGTAACGTCTGTGTTAGGTCCTTCAGATGCCTCAAGTTTGCACTTCCAATCCGGTGTGAATCTGATGATGACAGTATTTATTAATGGGGTTCCAACAGAAGTTCCAAGAGGGCCACTTGACATGAAAGCCATGTTTGGCACTCAAGATGTGTTGTTGGTTCATTCTTCTGGAGTTCCACTTCCAATCAATGAGTTTGGTTTCTTAGCCCACAGCTTGCAGCCTGGTGAAAGCTATTTCCTG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048364 GO:0048731 GO:0048830 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

217

Amino Acids

23.35

Weight (kDa)

6.04

Isoelectric Point (pI)

59.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03660 AT3G03660 AT3G03660 AT3G03660 AT5G17810 AT5G17810 AT5G17810
fragaria_vesca	FvH4_1g29830
malus_domestica	MD12G1012600.v1.1 MD14G1010400.v1.1
prunus_persica	Prupe.7G016600_v2.0.a1
pyrus_communis	pycom12g01010
rosa_chinensis	RchiOBHm_Chr3g0495921
rosa_laevigata	RLG00000022580
rosa_multiflora	Rmu_sc0010892.1_g000017
rosa_roxburghii	Rroxscaffold_6G00389910
rosa_rugosa	Rorug03G0277600
rosa_samantha	Rh3AG325000 Rh3BG361000 Rh3CG357300 Rh3DG360600
rosa_wichuraiana	Rw3G028380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	121
AclWI	GGATC	1 cut(s)	105
AcsI	RAATTY	1 cut(s)	53
AcuI	CTGAAG	1 cut(s)	417
AfaI	GTAC	1 cut(s)	214
AhlI	ACTAGT	1 cut(s)	218
AjnI	CCWGG	1 cut(s)	631
AluBI	AGCT	6 cut(s)	170, 207, 251, 266, 624, 642
AluI	AGCT	6 cut(s)	170, 207, 251, 266, 624, 642
Alw21I	GWGCWC	2 cut(s)	232, 399
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	1 cut(s)	105
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	1 cut(s)	521
ApeKI	GCWGC	4 cut(s)	164, 167, 332, 628
ApoI	RAATTY	1 cut(s)	53
AseI	ATTAAT	1 cut(s)	492
AspS9I	GGNCC	2 cut(s)	428, 521
AsuHPI	GGTGA	1 cut(s)	647
AvaII	GGWCC	1 cut(s)	428
BarI	GAAGNNNNNNTAC	2 cut(s)	196, 228
Bbv12I	GWGCWC	2 cut(s)	232, 399
BbvI	GCAGC	4 cut(s)	176, 179, 319, 640
BceAI	ACGGC	1 cut(s)	143
BciT130I	CCWGG	1 cut(s)	633
BclI	TGATCA	2 cut(s)	172, 349
BcoDI	GTCTC	1 cut(s)	17
BcuI	ACTAGT	1 cut(s)	218
BfaI	CTAG	3 cut(s)	47, 210, 219
BisI	GCNGC	5 cut(s)	121, 165, 168, 333, 629
BlsI	GCNGC	5 cut(s)	122, 166, 169, 334, 630
BmcAI	AGTACT	1 cut(s)	214
Bme1390I	CCNGG	1 cut(s)	633
Bme18I	GGWCC	1 cut(s)	428
BmgT120I	GGNCC	2 cut(s)	428, 521
BmiI	GGNNCC	3 cut(s)	92, 158, 501
BmrFI	CCNGG	1 cut(s)	633
BmsI	GCATC	2 cut(s)	61, 427
BpmI	CTGGAG	1 cut(s)	600
BpuEI	CTTGAG	2 cut(s)	427, 537
BsaI	GGTCTC	1 cut(s)	17
BsaWI	WCCGGW	3 cut(s)	368, 407, 461
BsaXI	ACNNNNNCTCC	2 cut(s)	389, 419
Bse1I	ACTGG	1 cut(s)	92
BseBI	CCWGG	1 cut(s)	633
BseNI	ACTGG	1 cut(s)	92
BseXI	GCAGC	4 cut(s)	176, 179, 319, 640
BshFI	GGCC	1 cut(s)	523
BsiHKAI	GWGCWC	2 cut(s)	232, 399
BsiSI	CCGG	3 cut(s)	369, 408, 462
BsmAI	GTCTC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	523
Bso31I	GGTCTC	1 cut(s)	17
Bsp1286I	GDGCHC	2 cut(s)	232, 399
Bsp143I	GATC	4 cut(s)	110, 172, 298, 349
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	1 cut(s)	523
BspLI	GGNNCC	3 cut(s)	92, 158, 501
BspPI	GGATC	1 cut(s)	105
BspTNI	GGTCTC	1 cut(s)	17
BsrI	ACTGG	1 cut(s)	92
BssMI	GATC	4 cut(s)	110, 172, 298, 349
Bst2UI	CCWGG	1 cut(s)	633
Bst4CI	ACNGT	4 cut(s)	28, 105, 401, 484
Bst6I	CTCTTC	1 cut(s)	15
BstC8I	GCNNGC	3 cut(s)	138, 142, 626
BstDEI	CTNAG	1 cut(s)	613
BstKTI	GATC	4 cut(s)	113, 175, 301, 352
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	4 cut(s)	110, 172, 298, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 338
BstNI	CCWGG	1 cut(s)	633
BstSCI	CCNGG	1 cut(s)	631
BstV1I	GCAGC	4 cut(s)	176, 179, 319, 640
BstX2I	RGATCY	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	110
BsuRI	GGCC	1 cut(s)	523
BtsIMutI	CAGTG	1 cut(s)	232
Cac8I	GCNNGC	3 cut(s)	138, 142, 626
CaiI	CAGNNNCTG	1 cut(s)	170
Cfr13I	GGNCC	2 cut(s)	428, 521
Csp6I	GTAC	1 cut(s)	213
CviAII	CATG	3 cut(s)	146, 532, 541
CviQI	GTAC	1 cut(s)	213
DdeI	CTNAG	1 cut(s)	613
DpnI	GATC	4 cut(s)	112, 174, 300, 351
DpnII	GATC	4 cut(s)	110, 172, 298, 349
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco31I	GGTCTC	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	428
Eco57I	CTGAAG	1 cut(s)	417
EcoO109I	RGGNCCY	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	631
FaeI	CATG	3 cut(s)	149, 535, 544
FaiI	YATR	7 cut(s)	147, 201, 254, 297, 338, 533, 542
FatI	CATG	3 cut(s)	145, 531, 540
FbaI	TGATCA	2 cut(s)	172, 349
Fnu4HI	GCNGC	5 cut(s)	121, 165, 168, 333, 629
Fsp4HI	GCNGC	5 cut(s)	121, 165, 168, 333, 629
FspBI	CTAG	3 cut(s)	47, 210, 219
GluI	GCNGC	5 cut(s)	121, 165, 168, 333, 629
GsuI	CTGGAG	1 cut(s)	600
HaeIII	GGCC	1 cut(s)	523
HapII	CCGG	3 cut(s)	369, 408, 462
Hin1II	CATG	3 cut(s)	149, 535, 544
HinfI	GANTC	2 cut(s)	311, 469
HpaII	CCGG	3 cut(s)	369, 408, 462
HphI	GGTGA	1 cut(s)	647
Hpy188I	TCNGA	3 cut(s)	15, 436, 474
Hpy188III	TCNNGA	4 cut(s)	108, 386, 554, 579
Hpy99I	CGWCG	2 cut(s)	105, 120
HpyAV	CCTTC	2 cut(s)	285, 441
HpyCH4III	ACNGT	4 cut(s)	28, 105, 401, 484
HpyCH4IV	ACGT	2 cut(s)	78, 416
HpyCH4V	TGCA	5 cut(s)	74, 136, 191, 451, 628
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 338
HpyF3I	CTNAG	1 cut(s)	613
HpySE526I	ACGT	2 cut(s)	78, 416
Hsp92II	CATG	3 cut(s)	149, 535, 544
Ksp22I	TGATCA	2 cut(s)	172, 349
Kzo9I	GATC	4 cut(s)	110, 172, 298, 349
LmnI	GCTCC	2 cut(s)	235, 263
Lsp1109I	GCAGC	4 cut(s)	176, 179, 319, 640
LweI	GCATC	2 cut(s)	61, 427
MaeI	CTAG	3 cut(s)	47, 210, 219
MaeII	ACGT	2 cut(s)	78, 416
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	4 cut(s)	112, 174, 300, 351
MboI	GATC	4 cut(s)	110, 172, 298, 349
MboII	GAAGA	5 cut(s)	32, 306, 309, 315, 567
MflI	RGATCY	1 cut(s)	110
MhlI	GDGCHC	2 cut(s)	232, 399
MluCI	AATT	3 cut(s)	53, 192, 292
MmeI	TCCRAC	2 cut(s)	46, 527
MnlI	CCTC	6 cut(s)	21, 24, 147, 415, 451, 512
MseI	TTAA	1 cut(s)	492
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	3 cut(s)	369, 408, 462
MspR9I	CCNGG	1 cut(s)	633
MvaI	CCWGG	1 cut(s)	633
MwoI	GCNNNNNNNGC	2 cut(s)	263, 338
NdeII	GATC	4 cut(s)	110, 172, 298, 349
NlaIII	CATG	3 cut(s)	149, 535, 544
NlaIV	GGNNCC	3 cut(s)	92, 158, 501
PfeI	GAWTC	2 cut(s)	311, 469
PkrI	GCNGC	5 cut(s)	122, 166, 169, 334, 630
PpuMI	RGGWCCY	1 cut(s)	428
PshBI	ATTAAT	1 cut(s)	492
Psp5II	RGGWCCY	1 cut(s)	428
Psp6I	CCWGG	1 cut(s)	631
PspGI	CCWGG	1 cut(s)	631
PspN4I	GGNNCC	3 cut(s)	92, 158, 501
PspPI	GGNCC	2 cut(s)	428, 521
PspPPI	RGGWCCY	1 cut(s)	428
PstNI	CAGNNNCTG	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	110
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	5 cut(s)	121, 165, 168, 333, 629
Sau3AI	GATC	4 cut(s)	110, 172, 298, 349
Sau96I	GGNCC	2 cut(s)	428, 521
ScaI	AGTACT	1 cut(s)	214
ScrFI	CCNGG	1 cut(s)	633
SduI	GDGCHC	2 cut(s)	232, 399
SfaNI	GCATC	2 cut(s)	61, 427
SinI	GGWCC	1 cut(s)	428
SmlI	CTYRAG	2 cut(s)	442, 552
SmoI	CTYRAG	2 cut(s)	442, 552
SpeI	ACTAGT	1 cut(s)	218
Sse9I	AATT	3 cut(s)	53, 192, 292
SsiI	CCGC	1 cut(s)	121
SspMI	CTAG	3 cut(s)	47, 210, 219
StyD4I	CCNGG	1 cut(s)	631
TaaI	ACNGT	4 cut(s)	28, 105, 401, 484
TaiI	ACGT	2 cut(s)	81, 419
TaqI	TCGA	1 cut(s)	278
TasI	AATT	3 cut(s)	53, 192, 292
TatI	WGTACW	1 cut(s)	212
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	2 cut(s)	311, 469
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	4 cut(s)	164, 167, 332, 628
TspDTI	ATGAA	3 cut(s)	309, 548, 560
TspRI	CASTG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	428
VspI	ATTAAT	1 cut(s)	492
XapI	RAATTY	1 cut(s)	53
XspI	CTAG	3 cut(s)	47, 210, 219
ZrmI	AGTACT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.