pycom12g01010

WUSCHEL-related homeobox

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0009573
Physical Location & Seq
Forward (+)
877820 .. 879741
1922 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g01010.1

Sequence Viewer

Length: 900 bp
ATGGAAGATCATCATCAAGGCCAAGACCCTAACGATAGCAGTCCAACCAACGGCTCGACAGAGAGAAGCCCTGAGCCGGTGAGGTCAAGATGGATACCGAAGCCACAGCAAATCCTAATTCTGGAGTCAATTTTCAACAGTGGAATGGTGAATCCTCCCAAAGAAGAAACTGTGAGAATAAGGAAACTGCTTAAGAAGTTTGGCTCCGTTGGGGATGCCAACGTTTTCTACTGGTTCCAAAACCGCCGTTCGCGATCTCGCCGCCGACAACGGCAGTTGCAGGCCAGCCTTGAACAAAGAACCAATAATAATATAAACAATAATCAAATGGCTTCTCTTTCTCAACACCAAGTGGGTGGTGCAATTCAATATGGAGAAAGCTGCGGTGTTCCTACTGCTGCTCCTCCTTTGGCTTTCGGAGCTTCTCCTAATAATTTTCTTGTGGGCTCTTCATCTTCGTCTTGTGGTCAACATCTGATAGCAGATCATGATGTTCACCATAGTATTGATTGCGTTGGTGATCAGTTCTTTTCTGTTTCTGGTCAAATGGGGTTTCCGGAAATCGAGCAGAGCTCCGGGGTAACGTCTGTGTTAGGAGGAGGCCCTTCTGATACCTCAAATTTGCACTTCCAATCTGGTAATTGGTCCATTAATTTATTTTCAGGTCTCATCACTGTGTTTATTAATGGGATTCCAACAGAAGTTCCCAACGGGCCACTTGACATGAAAGCCGTGTTTGGACAAGACGTGCTATTGGTTCATTCCTCTGGACTCGCACTTCCAATCAATGAATTTGGTTTTTTGGCACACAGCTTGGAGTCTGGTGAAAGCTATTTCCTGGTACTCTTTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATGA

Protein Analysis

300

Amino Acids

32.44

Weight (kDa)

5.9

Isoelectric Point (pI)

57.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 28 - 88 4.1e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03660 AT3G03660 AT3G03660 AT3G03660 AT5G17810 AT5G17810 AT5G17810
fragaria_vesca FvH4_1g29830
malus_domestica MD12G1012600.v1.1 MD14G1010400.v1.1
prunus_persica Prupe.7G016600_v2.0.a1
pyrus_communis pycom12g01010
rosa_chinensis RchiOBHm_Chr3g0495921
rosa_laevigata RLG00000022580
rosa_multiflora Rmu_sc0010892.1_g000017
rosa_roxburghii Rroxscaffold_6G00389910
rosa_rugosa Rorug03G0277600
rosa_samantha Rh3AG325000 Rh3BG361000 Rh3CG357300 Rh3DG360600
rosa_wichuraiana Rw3G028380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 253
AccIII TCCGGA 1 cut(s) 556
AciI CCGC 3 cut(s) 244, 262, 384
AclI AACGTT 1 cut(s) 222
AcsI RAATTY 2 cut(s) 619, 791
AdeI CACNNNGTG 1 cut(s) 352
AfaI GTAC 1 cut(s) 843
AfiI CCNNNNNNNGG 3 cut(s) 50, 76, 121
AflII CTTAAG 1 cut(s) 191
AgsI TTSAA 3 cut(s) 136, 293, 368
AjiI CACGTC 1 cut(s) 748
AjnI CCWGG 1 cut(s) 837
AluBI AGCT 5 cut(s) 381, 422, 573, 813, 831
AluI AGCT 5 cut(s) 381, 422, 573, 813, 831
Alw21I GWGCWC 1 cut(s) 575
Alw26I GTCTC 1 cut(s) 671
Aor13HI TCCGGA 1 cut(s) 556
AoxI GGCC 4 cut(s) 19, 282, 601, 713
ApeKI GCWGC 2 cut(s) 381, 398
ApoI RAATTY 2 cut(s) 619, 791
AseI ATTAAT 2 cut(s) 651, 684
AspS9I GGNCC 3 cut(s) 602, 645, 713
AsuC2I CCSGG 1 cut(s) 577
AsuHPI GGTGA 5 cut(s) 91, 160, 488, 530, 836
AvaII GGWCC 1 cut(s) 645
BanII GRGCYC 2 cut(s) 449, 575
Bbv12I GWGCWC 1 cut(s) 575
BbvI GCAGC 2 cut(s) 368, 385
BccI CCATC 1 cut(s) 84
BceAI ACGGC 4 cut(s) 67, 231, 287, 716
BciT130I CCWGG 1 cut(s) 839
BciVI GTATCC 1 cut(s) 87
BclI TGATCA 1 cut(s) 520
BcnI CCSGG 1 cut(s) 577
BcoDI GTCTC 1 cut(s) 671
BfrI CTTAAG 1 cut(s) 191
BfuI GTATCC 1 cut(s) 87
BisI GCNGC 3 cut(s) 262, 382, 399
BlsI GCNGC 3 cut(s) 263, 383, 400
Bme1390I CCNGG 2 cut(s) 577, 839
Bme18I GGWCC 1 cut(s) 645
BmgBI CACGTC 1 cut(s) 748
BmgT120I GGNCC 3 cut(s) 602, 645, 713
BmiI GGNNCC 2 cut(s) 205, 236
BmrFI CCNGG 2 cut(s) 577, 839
BmsI GCATC 1 cut(s) 205
BplI GAGNNNNNCTC 2 cut(s) 557, 589
BpmI CTGGAG 1 cut(s) 143
Bpu10I CCTNAGC 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 577
BsaBI GATNNNNATC 1 cut(s) 12
BsaI GGTCTC 1 cut(s) 671
BsaJI CCNNGG 1 cut(s) 576
BsaWI WCCGGW 1 cut(s) 556
BsaXI ACNNNNNCTCC 2 cut(s) 385, 415
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 76, 121
Bse118I RCCGGY 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 236
Bse8I GATNNNNATC 1 cut(s) 12
BseAI TCCGGA 1 cut(s) 556
BseBI CCWGG 1 cut(s) 839
BseDI CCNNGG 1 cut(s) 576
BseGI GGATG 1 cut(s) 220
BseJI GATNNNNATC 1 cut(s) 12
BseLI CCNNNNNNNGG 3 cut(s) 50, 76, 121
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 236
BseRI GAGGAG 2 cut(s) 393, 612
BseXI GCAGC 2 cut(s) 368, 385
Bsh1236I CGCG 1 cut(s) 253
BshFI GGCC 4 cut(s) 21, 284, 603, 715
BsiHKAI GWGCWC 1 cut(s) 575
BsiSI CCGG 3 cut(s) 77, 557, 576
BslI CCNNNNNNNGG 3 cut(s) 50, 76, 121
BsmAI GTCTC 1 cut(s) 671
BsnI GGCC 4 cut(s) 21, 284, 603, 715
Bso31I GGTCTC 1 cut(s) 671
Bsp1286I GDGCHC 2 cut(s) 449, 575
Bsp13I TCCGGA 1 cut(s) 556
Bsp143I GATC 4 cut(s) 7, 254, 484, 520
Bsp68I TCGCGA 1 cut(s) 253
BspACI CCGC 3 cut(s) 244, 262, 384
BspANI GGCC 4 cut(s) 21, 284, 603, 715
BspCNI CTCAG 1 cut(s) 64
BspEI TCCGGA 1 cut(s) 556
BspFNI CGCG 1 cut(s) 253
BspHI TCATGA 2 cut(s) 487, 896
BspLI GGNNCC 2 cut(s) 205, 236
BspQI GCTCTTC 1 cut(s) 454
BspTI CTTAAG 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 671
BsrFI RCCGGY 1 cut(s) 76
BsrI ACTGG 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 576
BssMI GATC 4 cut(s) 7, 254, 484, 520
Bst2UI CCWGG 1 cut(s) 839
Bst4CI ACNGT 3 cut(s) 140, 172, 676
Bst6I CTCTTC 1 cut(s) 454
BstAFI CTTAAG 1 cut(s) 191
BstC8I GCNNGC 2 cut(s) 282, 286
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 220
BstFNI CGCG 1 cut(s) 253
BstKTI GATC 4 cut(s) 10, 257, 487, 523
BstMAI GTCTC 1 cut(s) 671
BstMBI GATC 4 cut(s) 7, 254, 484, 520
BstMWI GCNNNNNNNGC 1 cut(s) 419
BstNI CCWGG 1 cut(s) 839
BstSCI CCNGG 2 cut(s) 575, 837
BstUI CGCG 1 cut(s) 253
BstV1I GCAGC 2 cut(s) 368, 385
BstXI CCANNNNNNTGG 1 cut(s) 356
BsuI GTATCC 1 cut(s) 87
BsuRI GGCC 4 cut(s) 21, 284, 603, 715
BtrI CACGTC 1 cut(s) 748
BtsCI GGATG 1 cut(s) 220
BtsIMutI CAGTG 2 cut(s) 145, 672
BtuMI TCGCGA 1 cut(s) 253
Cac8I GCNNGC 2 cut(s) 282, 286
CciI TCATGA 2 cut(s) 487, 896
Cfr10I RCCGGY 1 cut(s) 76
Cfr13I GGNCC 3 cut(s) 602, 645, 713
Csp6I GTAC 1 cut(s) 842
CviAII CATG 3 cut(s) 488, 724, 897
CviQI GTAC 1 cut(s) 842
DdeI CTNAG 1 cut(s) 72
DpnI GATC 4 cut(s) 9, 256, 486, 522
DpnII GATC 4 cut(s) 7, 254, 484, 520
DraIII CACNNNGTG 1 cut(s) 352
Eam1104I CTCTTC 1 cut(s) 454
EarI CTCTTC 1 cut(s) 454
Ecl136II GAGCTC 1 cut(s) 573
Eco24I GRGCYC 2 cut(s) 449, 575
Eco31I GGTCTC 1 cut(s) 671
Eco47I GGWCC 1 cut(s) 645
Eco53kI GAGCTC 1 cut(s) 573
EcoICRI GAGCTC 1 cut(s) 573
EcoO109I RGGNCCY 1 cut(s) 602
EcoRII CCWGG 1 cut(s) 837
EcoT38I GRGCYC 2 cut(s) 449, 575
FaeI CATG 3 cut(s) 491, 727, 900
FaiI YATR 6 cut(s) 314, 372, 489, 501, 725, 898
FatI CATG 3 cut(s) 487, 723, 896
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 3 cut(s) 262, 382, 399
FokI GGATG 1 cut(s) 227
FriOI GRGCYC 2 cut(s) 449, 575
Fsp4HI GCNGC 3 cut(s) 262, 382, 399
GluI GCNGC 3 cut(s) 262, 382, 399
GsuI CTGGAG 1 cut(s) 143
HaeIII GGCC 4 cut(s) 21, 284, 603, 715
HapII CCGG 3 cut(s) 77, 557, 576
Hin1II CATG 3 cut(s) 491, 727, 900
HincII GTYRAC 1 cut(s) 470
HindII GTYRAC 1 cut(s) 470
HinfI GANTC 5 cut(s) 125, 151, 691, 771, 818
HpaII CCGG 3 cut(s) 77, 557, 576
HphI GGTGA 5 cut(s) 91, 160, 488, 530, 836
Hpy166II GTNNAC 2 cut(s) 470, 496
Hpy188I TCNGA 3 cut(s) 419, 477, 610
Hpy188III TCNNGA 7 cut(s) 87, 122, 252, 488, 557, 768, 897
Hpy8I GTNNAC 2 cut(s) 470, 496
HpyAV CCTTC 1 cut(s) 615
HpyCH4III ACNGT 3 cut(s) 140, 172, 676
HpyCH4IV ACGT 3 cut(s) 222, 584, 747
HpyCH4V TGCA 3 cut(s) 280, 362, 625
HpyF10VI GCNNNNNNNGC 1 cut(s) 419
HpyF3I CTNAG 1 cut(s) 72
HpySE526I ACGT 3 cut(s) 222, 584, 747
Hsp92II CATG 3 cut(s) 491, 727, 900
Kpn2I TCCGGA 1 cut(s) 556
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 4 cut(s) 7, 254, 484, 520
LguI GCTCTTC 1 cut(s) 454
LmnI GCTCC 4 cut(s) 209, 406, 419, 578
Lsp1109I GCAGC 2 cut(s) 368, 385
LweI GCATC 1 cut(s) 205
MaeII ACGT 3 cut(s) 222, 584, 747
MaeIII GTNAC 1 cut(s) 580
MalI GATC 4 cut(s) 9, 256, 486, 522
MboI GATC 4 cut(s) 7, 254, 484, 520
MboII GAAGA 4 cut(s) 17, 176, 441, 447
MhlI GDGCHC 2 cut(s) 449, 575
MluCI AATT 8 cut(s) 117, 129, 363, 433, 619, 640, 652, 791
MlyI GAGTC 3 cut(s) 134, 765, 827
MmeI TCCRAC 2 cut(s) 68, 719
MnlI CCTC 8 cut(s) 75, 165, 414, 590, 593, 625, 775, 862
MroI TCCGGA 1 cut(s) 556
MseI TTAA 3 cut(s) 192, 651, 684
MslI CAYNNNNRTG 1 cut(s) 674
MspCI CTTAAG 1 cut(s) 191
MspI CCGG 3 cut(s) 77, 557, 576
MspR9I CCNGG 2 cut(s) 577, 839
MvaI CCWGG 1 cut(s) 839
MvnI CGCG 1 cut(s) 253
MwoI GCNNNNNNNGC 1 cut(s) 419
NciI CCSGG 1 cut(s) 577
NdeII GATC 4 cut(s) 7, 254, 484, 520
NlaIII CATG 3 cut(s) 491, 727, 900
NlaIV GGNNCC 2 cut(s) 205, 236
NruI TCGCGA 1 cut(s) 253
PagI TCATGA 2 cut(s) 487, 896
PciSI GCTCTTC 1 cut(s) 454
PfeI GAWTC 2 cut(s) 151, 691
PkrI GCNGC 3 cut(s) 263, 383, 400
PleI GAGTC 3 cut(s) 133, 765, 826
PpsI GAGTC 3 cut(s) 133, 765, 826
PshBI ATTAAT 2 cut(s) 651, 684
Psp124BI GAGCTC 1 cut(s) 575
Psp1406I AACGTT 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 837
PspGI CCWGG 1 cut(s) 837
PspN4I GGNNCC 2 cut(s) 205, 236
PspPI GGNCC 3 cut(s) 602, 645, 713
RruI TCGCGA 1 cut(s) 253
RsaI GTAC 1 cut(s) 843
RsaNI GTAC 1 cut(s) 842
RseI CAYNNNNRTG 1 cut(s) 674
SacI GAGCTC 1 cut(s) 575
SapI GCTCTTC 1 cut(s) 454
SaqAI TTAA 3 cut(s) 192, 651, 684
SatI GCNGC 3 cut(s) 262, 382, 399
Sau3AI GATC 4 cut(s) 7, 254, 484, 520
Sau96I GGNCC 3 cut(s) 602, 645, 713
SchI GAGTC 3 cut(s) 134, 765, 827
ScrFI CCNGG 2 cut(s) 577, 839
SduI GDGCHC 2 cut(s) 449, 575
SfaNI GCATC 1 cut(s) 205
SinI GGWCC 1 cut(s) 645
SmiMI CAYNNNNRTG 1 cut(s) 674
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 8 cut(s) 117, 129, 363, 433, 619, 640, 652, 791
SsiI CCGC 3 cut(s) 244, 262, 384
SstI GAGCTC 1 cut(s) 575
StyD4I CCNGG 2 cut(s) 575, 837
TaaI ACNGT 3 cut(s) 140, 172, 676
TaiI ACGT 3 cut(s) 225, 587, 750
TaqI TCGA 2 cut(s) 56, 564
TasI AATT 8 cut(s) 117, 129, 363, 433, 619, 640, 652, 791
TauI GCSGC 1 cut(s) 264
TfiI GAWTC 2 cut(s) 151, 691
Tru1I TTAA 3 cut(s) 192, 651, 684
Tru9I TTAA 3 cut(s) 192, 651, 684
TscAI CASTG 2 cut(s) 145, 679
TseI GCWGC 2 cut(s) 381, 398
TspDTI ATGAA 4 cut(s) 441, 740, 749, 804
TspGWI ACGGA 1 cut(s) 196
TspRI CASTG 2 cut(s) 145, 679
Vha464I CTTAAG 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 645
VspI ATTAAT 2 cut(s) 651, 684
XapI RAATTY 2 cut(s) 619, 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.