RLG00000022580

WUSCHEL-related homeobox

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0009573
Physical Location & Seq
Forward (+)
4461910 .. 4464767
2858 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022580

Sequence Viewer

Length: 1014 bp
ATGTATTTTGTCATCAACATTACTTCAAGCCCTTTATATAGCCTGACTTCCTTGAAGCGGTTCATGTACTTTAATTTATTATTTCCCTTCAACCTAGGTTTCAGGTTCACGAACATCGTTTTTTTATTTATTTCCTTTTTTTCTTATTTCTTCTCTCCTTCCTTCCTCACAGTAATGGAAGATCATCAAGGCCAAGGCGGAGGCCAAGAGGCCAAAGAGCCAAACAGTCCAAACAGTCCAAACAGTAATGGCTCCTCAGAGAGAAGTGAACCAGTAAGGTCAAGGTGGATTCCGAAACCAGAGCAAATCCTAATTCTGGAGTCTATTTTCAATAGTGGAATGGTAAATCCTCCGAAAGAAGAGACCGTGAGGATAAGAAAACTGCTAGAGAAATTCGGGTCGGTTGGAGATGCAAACGTCTTTTACTGGTTCCAAAACCGACGGTCAAGATCCCGTCGCCGCCAACGGCAGTTGCAAGCCAGCCTTGAGCAGAGGAACCAAGCAGCAGCTGATCAACAAGTTGGTGGTGCAATTCAGTATGGAAGCTCTAGTAATACTAGTTTCAGTGCTCCACCACCAGCAGCAGCAGCAGCAGCTATGGCTTTTGGAGCTTCTACACCTTCGACTTTTGGTTCTAATTATGATCTTGTGGGCGATTCTTCTTCATCTTCTTGTGCTGCTATGGCAGCAGATGATCACTTCTTTTCAGTTTCCGGTCAAATGGGTTTTCCAGATATCGAGCACAGTTCCTCCGGTGTAACGTCTGTGTTAGGTCCTTCAGATGCCTCAAGTTTGCACTTCCAATCTGGTGTGAATCTGATGATGACAGTATTTATTAATGGGGTTCCAACAGAAGTTCCAAGAGGGCCACTTGACATGAAAGCAATGTTTGGCACTCAAGATGTGTTGTTGGTTCATTCCTCTGGAGTTCCACTTCCAATCAATGAGTTTGGTTTCTTAGCCCACAGCTTGCAGCCTGGTGAAAGCTATTTCCTGGTTTCCAGACCAAATTAA

Protein Analysis

338

Amino Acids

36.89

Weight (kDa)

6.31

Isoelectric Point (pI)

64.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 93 - 153 3.7e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03660 AT3G03660 AT3G03660 AT3G03660 AT5G17810 AT5G17810 AT5G17810
fragaria_vesca FvH4_1g29830
malus_domestica MD12G1012600.v1.1 MD14G1010400.v1.1
prunus_persica Prupe.7G016600_v2.0.a1
pyrus_communis pycom12g01010
rosa_chinensis RchiOBHm_Chr3g0495921
rosa_laevigata RLG00000022580
rosa_multiflora Rmu_sc0010892.1_g000017
rosa_roxburghii Rroxscaffold_6G00389910
rosa_rugosa Rorug03G0277600
rosa_samantha Rh3AG325000 Rh3BG361000 Rh3CG357300 Rh3DG360600
rosa_wichuraiana Rw3G028380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 58, 198, 460
AclWI GGATC 1 cut(s) 444
AcsI RAATTY 1 cut(s) 392
AcuI CTGAAG 1 cut(s) 762
AfaI GTAC 1 cut(s) 68
AfiI CCNNNNNNNGG 2 cut(s) 57, 316
AgsI TTSAA 4 cut(s) 27, 55, 91, 331
AhlI ACTAGT 1 cut(s) 557
AjnI CCWGG 2 cut(s) 976, 993
AluBI AGCT 6 cut(s) 509, 546, 596, 611, 969, 987
AluI AGCT 6 cut(s) 509, 546, 596, 611, 969, 987
Alw21I GWGCWC 2 cut(s) 571, 744
Alw26I GTCTC 1 cut(s) 356
AlwI GGATC 1 cut(s) 444
AlwNI CAGNNNCTG 1 cut(s) 509
AoxI GGCC 4 cut(s) 190, 202, 210, 866
ApoI RAATTY 1 cut(s) 392
AseI ATTAAT 1 cut(s) 837
Asp700I GAANNNNTTC 1 cut(s) 59
AspA2I CCTAGG 1 cut(s) 94
AspS9I GGNCC 2 cut(s) 773, 866
AsuHPI GGTGA 1 cut(s) 992
AvaII GGWCC 1 cut(s) 773
AvrII CCTAGG 1 cut(s) 94
Bbv12I GWGCWC 2 cut(s) 571, 744
BceAI ACGGC 1 cut(s) 482
BciT130I CCWGG 2 cut(s) 978, 995
BclI TGATCA 2 cut(s) 511, 694
BcoDI GTCTC 1 cut(s) 356
BcuI ACTAGT 1 cut(s) 557
BfaI CTAG 4 cut(s) 95, 386, 549, 558
BlnI CCTAGG 1 cut(s) 94
Bme1390I CCNGG 2 cut(s) 978, 995
Bme18I GGWCC 1 cut(s) 773
BmgT120I GGNCC 2 cut(s) 773, 866
BmiI GGNNCC 4 cut(s) 253, 431, 497, 846
BmrFI CCNGG 2 cut(s) 978, 995
BmsI GCATC 2 cut(s) 400, 772
BpmI CTGGAG 2 cut(s) 338, 945
BpuEI CTTGAG 3 cut(s) 506, 772, 882
BsaI GGTCTC 1 cut(s) 356
BsaJI CCNNGG 2 cut(s) 94, 193
BsaWI WCCGGW 2 cut(s) 713, 752
BsaXI ACNNNNNCTCC 2 cut(s) 734, 764
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 316
Bse1I ACTGG 2 cut(s) 272, 431
Bse3DI GCAATG 1 cut(s) 891
BseBI CCWGG 2 cut(s) 978, 995
BseDI CCNNGG 2 cut(s) 94, 193
BseLI CCNNNNNNNGG 2 cut(s) 57, 316
BseMI GCAATG 1 cut(s) 891
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 2 cut(s) 272, 431
BseRI GAGGAG 1 cut(s) 244
BshFI GGCC 4 cut(s) 192, 204, 212, 868
BsiHKAI GWGCWC 2 cut(s) 571, 744
BsiSI CCGG 2 cut(s) 714, 753
BslI CCNNNNNNNGG 2 cut(s) 57, 316
BsmAI GTCTC 1 cut(s) 356
BsnI GGCC 4 cut(s) 192, 204, 212, 868
Bso31I GGTCTC 1 cut(s) 356
Bsp1286I GDGCHC 2 cut(s) 571, 744
Bsp143I GATC 5 cut(s) 181, 449, 511, 643, 694
BspACI CCGC 3 cut(s) 58, 198, 460
BspANI GGCC 4 cut(s) 192, 204, 212, 868
BspCNI CTCAG 1 cut(s) 269
BspLI GGNNCC 4 cut(s) 253, 431, 497, 846
BspPI GGATC 1 cut(s) 444
BspTNI GGTCTC 1 cut(s) 356
BsrDI GCAATG 1 cut(s) 891
BsrI ACTGG 2 cut(s) 272, 431
BssECI CCNNGG 2 cut(s) 94, 193
BssMI GATC 5 cut(s) 181, 449, 511, 643, 694
BssT1I CCWWGG 2 cut(s) 94, 193
Bst2UI CCWGG 2 cut(s) 978, 995
Bst4CI ACNGT 8 cut(s) 172, 227, 236, 245, 367, 444, 746, 829
Bst6I CTCTTC 1 cut(s) 354
BstC8I GCNNGC 3 cut(s) 477, 481, 971
BstDEI CTNAG 2 cut(s) 256, 958
BstKTI GATC 5 cut(s) 184, 452, 514, 646, 697
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 5 cut(s) 181, 449, 511, 643, 694
BstMWI GCNNNNNNNGC 7 cut(s) 587, 590, 593, 599, 608, 683, 686
BstNI CCWGG 2 cut(s) 978, 995
BstSCI CCNGG 2 cut(s) 976, 993
BstX2I RGATCY 1 cut(s) 449
BstYI RGATCY 1 cut(s) 449
BsuRI GGCC 4 cut(s) 192, 204, 212, 868
BtsIMutI CAGTG 1 cut(s) 571
Cac8I GCNNGC 3 cut(s) 477, 481, 971
CaiI CAGNNNCTG 1 cut(s) 509
Cfr13I GGNCC 2 cut(s) 773, 866
Csp6I GTAC 1 cut(s) 67
CviAII CATG 2 cut(s) 64, 877
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 2 cut(s) 256, 958
DpnI GATC 5 cut(s) 183, 451, 513, 645, 696
DpnII GATC 5 cut(s) 181, 449, 511, 643, 694
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
EciI GGCGGA 1 cut(s) 213
Eco130I CCWWGG 2 cut(s) 94, 193
Eco31I GGTCTC 1 cut(s) 356
Eco32I GATATC 1 cut(s) 736
Eco47I GGWCC 1 cut(s) 773
Eco57I CTGAAG 1 cut(s) 762
EcoO109I RGGNCCY 1 cut(s) 773
EcoRII CCWGG 2 cut(s) 976, 993
EcoRV GATATC 1 cut(s) 736
EcoT14I CCWWGG 2 cut(s) 94, 193
ErhI CCWWGG 2 cut(s) 94, 193
FaeI CATG 2 cut(s) 67, 880
FaiI YATR 8 cut(s) 37, 39, 65, 540, 599, 642, 683, 878
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FatI CATG 2 cut(s) 63, 876
FbaI TGATCA 2 cut(s) 511, 694
FspBI CTAG 4 cut(s) 95, 386, 549, 558
GsuI CTGGAG 2 cut(s) 338, 945
HaeIII GGCC 4 cut(s) 192, 204, 212, 868
HapII CCGG 2 cut(s) 714, 753
Hin1II CATG 2 cut(s) 67, 880
HinfI GANTC 4 cut(s) 289, 320, 656, 814
HpaII CCGG 2 cut(s) 714, 753
HphI GGTGA 1 cut(s) 992
Hpy166II GTNNAC 2 cut(s) 108, 269
Hpy188I TCNGA 5 cut(s) 259, 294, 354, 781, 819
Hpy188III TCNNGA 7 cut(s) 109, 317, 447, 731, 899, 924, 1002
Hpy8I GTNNAC 2 cut(s) 108, 269
Hpy99I CGWCG 2 cut(s) 444, 459
HpyAV CCTTC 5 cut(s) 97, 168, 172, 630, 786
HpyCH4III ACNGT 8 cut(s) 172, 227, 236, 245, 367, 444, 746, 829
HpyCH4IV ACGT 2 cut(s) 417, 761
HpyCH4V TGCA 5 cut(s) 413, 475, 530, 796, 973
HpyF10VI GCNNNNNNNGC 7 cut(s) 587, 590, 593, 599, 608, 683, 686
HpyF3I CTNAG 2 cut(s) 256, 958
HpySE526I ACGT 2 cut(s) 417, 761
Hsp92II CATG 2 cut(s) 67, 880
Ksp22I TGATCA 2 cut(s) 511, 694
Kzo9I GATC 5 cut(s) 181, 449, 511, 643, 694
LmnI GCTCC 3 cut(s) 257, 574, 608
LweI GCATC 2 cut(s) 400, 772
MaeI CTAG 4 cut(s) 95, 386, 549, 558
MaeII ACGT 2 cut(s) 417, 761
MaeIII GTNAC 1 cut(s) 757
MalI GATC 5 cut(s) 183, 451, 513, 645, 696
MboI GATC 5 cut(s) 181, 449, 511, 643, 694
MboII GAAGA 6 cut(s) 142, 191, 371, 651, 654, 660
MflI RGATCY 1 cut(s) 449
MhlI GDGCHC 2 cut(s) 571, 744
MluCI AATT 6 cut(s) 73, 312, 392, 531, 637, 1009
MlyI GAGTC 1 cut(s) 329
MmeI TCCRAC 2 cut(s) 385, 872
MroXI GAANNNNTTC 1 cut(s) 59
MseI TTAA 3 cut(s) 72, 837, 1012
MslI CAYNNNNRTG 1 cut(s) 173
MspA1I CMGCKG 1 cut(s) 509
MspI CCGG 2 cut(s) 714, 753
MspR9I CCNGG 2 cut(s) 978, 995
MvaI CCWGG 2 cut(s) 978, 995
MwoI GCNNNNNNNGC 7 cut(s) 587, 590, 593, 599, 608, 683, 686
NdeII GATC 5 cut(s) 181, 449, 511, 643, 694
NlaIII CATG 2 cut(s) 67, 880
NlaIV GGNNCC 4 cut(s) 253, 431, 497, 846
PdmI GAANNNNTTC 1 cut(s) 59
PfeI GAWTC 3 cut(s) 289, 656, 814
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
PpuMI RGGWCCY 1 cut(s) 773
PshBI ATTAAT 1 cut(s) 837
Psp5II RGGWCCY 1 cut(s) 773
Psp6I CCWGG 2 cut(s) 976, 993
PspGI CCWGG 2 cut(s) 976, 993
PspN4I GGNNCC 4 cut(s) 253, 431, 497, 846
PspPI GGNCC 2 cut(s) 773, 866
PspPPI RGGWCCY 1 cut(s) 773
PstNI CAGNNNCTG 1 cut(s) 509
PsuI RGATCY 1 cut(s) 449
PvuII CAGCTG 1 cut(s) 509
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 173
SaqAI TTAA 3 cut(s) 72, 837, 1012
Sau3AI GATC 5 cut(s) 181, 449, 511, 643, 694
Sau96I GGNCC 2 cut(s) 773, 866
SchI GAGTC 1 cut(s) 329
ScrFI CCNGG 2 cut(s) 978, 995
SduI GDGCHC 2 cut(s) 571, 744
SfaNI GCATC 2 cut(s) 400, 772
SinI GGWCC 1 cut(s) 773
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 3 cut(s) 485, 787, 897
SmoI CTYRAG 3 cut(s) 485, 787, 897
SpeI ACTAGT 1 cut(s) 557
Sse9I AATT 6 cut(s) 73, 312, 392, 531, 637, 1009
SsiI CCGC 3 cut(s) 58, 198, 460
SspMI CTAG 4 cut(s) 95, 386, 549, 558
StyD4I CCNGG 2 cut(s) 976, 993
StyI CCWWGG 2 cut(s) 94, 193
TaaI ACNGT 8 cut(s) 172, 227, 236, 245, 367, 444, 746, 829
TaiI ACGT 2 cut(s) 420, 764
TaqI TCGA 2 cut(s) 623, 738
TasI AATT 6 cut(s) 73, 312, 392, 531, 637, 1009
TatI WGTACW 1 cut(s) 66
TauI GCSGC 1 cut(s) 462
TfiI GAWTC 3 cut(s) 289, 656, 814
Tru1I TTAA 3 cut(s) 72, 837, 1012
Tru9I TTAA 3 cut(s) 72, 837, 1012
TscAI CASTG 1 cut(s) 571
TspDTI ATGAA 4 cut(s) 52, 654, 893, 905
TspRI CASTG 1 cut(s) 571
VpaK11BI GGWCC 1 cut(s) 773
VspI ATTAAT 1 cut(s) 837
XapI RAATTY 1 cut(s) 392
XmaJI CCTAGG 1 cut(s) 94
XmnI GAANNNNTTC 1 cut(s) 59
XspI CTAG 4 cut(s) 95, 386, 549, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.