Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0009573

Physical Location & Seq

Genomic Coordinates Forward (+)

1004120 .. 1006448

Gene Structure 2329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1010400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGAAGATCATCATCAACATCAAGGCCAAGACCCTGACGGTAGTAGTCCAAGCAACGGCTCGACCGAGAGAAGCCCTGAGCCGGTGAGGTCAAGATGGATACCGAAGCCAGAGCAAATCCTAATTCTGGAGTCAATTTTCAACAGTGGAATGGTGAATCCTCCCAAAGAAGAAACTGTGAGAATAAGGAAACTGCTTGAGAAGTTTGGCTCTGTTGGGGATGCCAACGTTTTCTACTGGTTCCAAAACCGCCGGTCGAGATCTCGCCGCCGACAACGGCAGTTGCAGGCAAGCCTTGAACAAGGGACCAATAATAATATAAACAATGATCCAATGGCTTCTCTTTCTCATCACCAATTGCGTGGTGAAATTCAGTACGGAATAAGCTGCAGTGTTCCTGCTACTGCTCCTCCCTTGGCTTTCGGAGCTTCTCCTAATAATTTCCTTATGGGTTCTTCATCTTCTTCGTCTTGTGGCCATCATCTGATAACAGATAATGATGTTCATCATAGTACTGCTTGCGTTGATGATCAGTTCTTTCCAGTTTCTGGTCAAATGGGGTTTCCGGAAATCGAGCAGAGCTCCGGTGTAACGTCTGCGTTAGGAGGAGGCCCTTCTGATACCTCCAATTTGCAGTTCCAGTCTGGTCTCATCACAGTGTTTATTAATGGGTTTCCAACAGAATTTCCCAAAGGGCCACTTGACATGAAAGCCGTGTTTGGCCAAGATGTGCTATTGGTTCACTCCTCTGGACTCCCACTTCCAATCAATGAATTTGGTTTCTTGGCACAAAGCTTGGAGTCTGGTGAAAGCTATTTCCTGGTTTCAAGACCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048364 GO:0048731 GO:0048830 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

280

Amino Acids

30.5

Weight (kDa)

5.65

Isoelectric Point (pI)

73.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 90	2.7e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03660 AT3G03660 AT3G03660 AT3G03660 AT5G17810 AT5G17810 AT5G17810
fragaria_vesca	FvH4_1g29830
malus_domestica	MD12G1012600.v1.1 MD14G1010400.v1.1
prunus_persica	Prupe.7G016600_v2.0.a1
pyrus_communis	pycom12g01010
rosa_chinensis	RchiOBHm_Chr3g0495921
rosa_laevigata	RLG00000022580
rosa_multiflora	Rmu_sc0010892.1_g000017
rosa_roxburghii	Rroxscaffold_6G00389910
rosa_rugosa	Rorug03G0277600
rosa_samantha	Rh3AG325000 Rh3BG361000 Rh3CG357300 Rh3DG360600
rosa_wichuraiana	Rw3G028380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	548
AccIII	TCCGGA	1 cut(s)	565
AciI	CCGC	2 cut(s)	250, 268
AclI	AACGTT	1 cut(s)	228
AclWI	GGATC	1 cut(s)	323
AcoI	YGGCCR	2 cut(s)	475, 721
AcsI	RAATTY	3 cut(s)	369, 683, 773
AfaI	GTAC	2 cut(s)	377, 514
AfiI	CCNNNNNNNGG	4 cut(s)	56, 82, 127, 548
AgsI	TTSAA	3 cut(s)	142, 299, 828
AjnI	CCWGG	1 cut(s)	819
AjuI	GAANNNNNNNTTGG	2 cut(s)	620, 652
AluBI	AGCT	5 cut(s)	387, 428, 582, 795, 813
AluI	AGCT	5 cut(s)	387, 428, 582, 795, 813
Alw21I	GWGCWC	1 cut(s)	584
Alw26I	GTCTC	1 cut(s)	653
AlwI	GGATC	1 cut(s)	323
AlwNI	CAGNNNCTG	1 cut(s)	548
Aor13HI	TCCGGA	1 cut(s)	565
AoxI	GGCC	5 cut(s)	25, 475, 610, 695, 721
ApeKI	GCWGC	1 cut(s)	387
ApoI	RAATTY	3 cut(s)	369, 683, 773
AseI	ATTAAT	1 cut(s)	666
AspS9I	GGNCC	3 cut(s)	306, 611, 695
AsuHPI	GGTGA	5 cut(s)	97, 166, 344, 377, 818
AvaII	GGWCC	1 cut(s)	306
BalI	TGGCCA	2 cut(s)	477, 723
BanII	GRGCYC	1 cut(s)	584
Bbv12I	GWGCWC	1 cut(s)	584
BbvI	GCAGC	1 cut(s)	374
BccI	CCATC	2 cut(s)	90, 486
BceAI	ACGGC	3 cut(s)	73, 293, 698
BciT130I	CCWGG	1 cut(s)	821
BciVI	GTATCC	1 cut(s)	93
BclI	TGATCA	1 cut(s)	529
BcoDI	GTCTC	1 cut(s)	653
BfmI	CTRYAG	1 cut(s)	388
BfuI	GTATCC	1 cut(s)	93
BglII	AGATCT	1 cut(s)	260
BisI	GCNGC	2 cut(s)	268, 388
BlsI	GCNGC	2 cut(s)	269, 389
BmcAI	AGTACT	1 cut(s)	514
Bme1390I	CCNGG	1 cut(s)	821
Bme18I	GGWCC	1 cut(s)	306
BmgT120I	GGNCC	3 cut(s)	306, 611, 695
BmiI	GGNNCC	2 cut(s)	242, 307
BmrFI	CCNGG	1 cut(s)	821
BmsI	GCATC	1 cut(s)	211
BplI	GAGNNNNNCTC	2 cut(s)	566, 598
BpmI	CTGGAG	1 cut(s)	149
Bpu10I	CCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	218
BsaBI	GATNNNNATC	2 cut(s)	12, 504
BsaI	GGTCTC	1 cut(s)	653
BsaJI	CCNNGG	1 cut(s)	414
BsaWI	WCCGGW	2 cut(s)	565, 584
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	4 cut(s)	56, 82, 127, 548
Bse118I	RCCGGY	2 cut(s)	82, 252
Bse1I	ACTGG	3 cut(s)	242, 542, 640
Bse8I	GATNNNNATC	2 cut(s)	12, 504
BseAI	TCCGGA	1 cut(s)	565
BseBI	CCWGG	1 cut(s)	821
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	1 cut(s)	226
BseJI	GATNNNNATC	2 cut(s)	12, 504
BseLI	CCNNNNNNNGG	4 cut(s)	56, 82, 127, 548
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	3 cut(s)	242, 542, 640
BseRI	GAGGAG	3 cut(s)	399, 621, 736
BseXI	GCAGC	1 cut(s)	374
Bsh1285I	CGRYCG	2 cut(s)	66, 257
BshFI	GGCC	5 cut(s)	27, 477, 612, 697, 723
BsiEI	CGRYCG	2 cut(s)	66, 257
BsiHKAI	GWGCWC	1 cut(s)	584
BsiSI	CCGG	4 cut(s)	83, 253, 566, 585
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	4 cut(s)	56, 82, 127, 548
BsmAI	GTCTC	1 cut(s)	653
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	5 cut(s)	27, 477, 612, 697, 723
Bso31I	GGTCTC	1 cut(s)	653
Bsp1286I	GDGCHC	1 cut(s)	584
Bsp13I	TCCGGA	1 cut(s)	565
Bsp143I	GATC	4 cut(s)	7, 260, 328, 529
BspACI	CCGC	2 cut(s)	250, 268
BspANI	GGCC	5 cut(s)	27, 477, 612, 697, 723
BspCNI	CTCAG	1 cut(s)	70
BspEI	TCCGGA	1 cut(s)	565
BspLI	GGNNCC	2 cut(s)	242, 307
BspMAI	CTGCAG	1 cut(s)	392
BspPI	GGATC	1 cut(s)	323
BspTNI	GGTCTC	1 cut(s)	653
BsrFI	RCCGGY	2 cut(s)	82, 252
BsrI	ACTGG	3 cut(s)	242, 542, 640
BssAI	RCCGGY	2 cut(s)	82, 252
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	4 cut(s)	7, 260, 328, 529
BssT1I	CCWWGG	1 cut(s)	414
Bst2UI	CCWGG	1 cut(s)	821
Bst4CI	ACNGT	4 cut(s)	41, 146, 178, 658
BstC8I	GCNNGC	3 cut(s)	288, 292, 520
BstDEI	CTNAG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	4 cut(s)	10, 263, 331, 532
BstMAI	GTCTC	1 cut(s)	653
BstMBI	GATC	4 cut(s)	7, 260, 328, 529
BstMCI	CGRYCG	2 cut(s)	66, 257
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstNI	CCWGG	1 cut(s)	821
BstSCI	CCNGG	1 cut(s)	819
BstSFI	CTRYAG	1 cut(s)	388
BstV1I	GCAGC	1 cut(s)	374
BstX2I	RGATCY	1 cut(s)	260
BstXI	CCANNNNNNTGG	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	260
BsuI	GTATCC	1 cut(s)	93
BsuRI	GGCC	5 cut(s)	27, 477, 612, 697, 723
BtsCI	GGATG	1 cut(s)	226
BtsI	GCAGTG	1 cut(s)	397
BtsIMutI	CAGTG	3 cut(s)	151, 397, 663
Cac8I	GCNNGC	3 cut(s)	288, 292, 520
CaiI	CAGNNNCTG	1 cut(s)	548
Cfr10I	RCCGGY	2 cut(s)	82, 252
Cfr13I	GGNCC	3 cut(s)	306, 611, 695
Csp6I	GTAC	2 cut(s)	376, 513
CviAII	CATG	1 cut(s)	706
CviQI	GTAC	2 cut(s)	376, 513
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	4 cut(s)	9, 262, 330, 531
DpnII	GATC	4 cut(s)	7, 260, 328, 529
EaeI	YGGCCR	2 cut(s)	475, 721
Ecl136II	GAGCTC	1 cut(s)	582
Eco130I	CCWWGG	1 cut(s)	414
Eco24I	GRGCYC	1 cut(s)	584
Eco31I	GGTCTC	1 cut(s)	653
Eco47I	GGWCC	1 cut(s)	306
Eco53kI	GAGCTC	1 cut(s)	582
EcoICRI	GAGCTC	1 cut(s)	582
EcoO109I	RGGNCCY	1 cut(s)	611
EcoRII	CCWGG	1 cut(s)	819
EcoT14I	CCWWGG	1 cut(s)	414
EcoT38I	GRGCYC	1 cut(s)	584
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	1 cut(s)	709
FaiI	YATR	4 cut(s)	320, 449, 510, 707
FalI	AAGNNNNNCTT	2 cut(s)	684, 716
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	1 cut(s)	705
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	2 cut(s)	268, 388
FokI	GGATG	1 cut(s)	233
FriOI	GRGCYC	1 cut(s)	584
Fsp4HI	GCNGC	2 cut(s)	268, 388
GluI	GCNGC	2 cut(s)	268, 388
GsuI	CTGGAG	1 cut(s)	149
HaeIII	GGCC	5 cut(s)	27, 477, 612, 697, 723
HapII	CCGG	4 cut(s)	83, 253, 566, 585
Hin1II	CATG	1 cut(s)	709
HindIII	AAGCTT	1 cut(s)	793
HinfI	GANTC	4 cut(s)	131, 157, 753, 800
HpaII	CCGG	4 cut(s)	83, 253, 566, 585
HphI	GGTGA	5 cut(s)	97, 166, 344, 377, 818
Hpy166II	GTNNAC	1 cut(s)	742
Hpy188I	TCNGA	3 cut(s)	425, 486, 619
Hpy188III	TCNNGA	6 cut(s)	93, 128, 258, 566, 750, 828
Hpy8I	GTNNAC	1 cut(s)	742
HpyAV	CCTTC	1 cut(s)	624
HpyCH4III	ACNGT	4 cut(s)	41, 146, 178, 658
HpyCH4IV	ACGT	2 cut(s)	228, 593
HpyCH4V	TGCA	3 cut(s)	286, 390, 634
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	1 cut(s)	78
HpySE526I	ACGT	2 cut(s)	228, 593
Hsp92II	CATG	1 cut(s)	709
Kpn2I	TCCGGA	1 cut(s)	565
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	4 cut(s)	7, 260, 328, 529
LmnI	GCTCC	3 cut(s)	412, 425, 587
Lsp1109I	GCAGC	1 cut(s)	374
LweI	GCATC	1 cut(s)	211
MaeII	ACGT	2 cut(s)	228, 593
MaeIII	GTNAC	1 cut(s)	589
MalI	GATC	4 cut(s)	9, 262, 330, 531
MboI	GATC	4 cut(s)	7, 260, 328, 529
MboII	GAAGA	5 cut(s)	17, 182, 447, 453, 456
MfeI	CAATTG	1 cut(s)	356
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	1 cut(s)	584
MlsI	TGGCCA	2 cut(s)	477, 723
MluCI	AATT	8 cut(s)	123, 135, 356, 369, 439, 628, 683, 773
MluNI	TGGCCA	2 cut(s)	477, 723
MlyI	GAGTC	3 cut(s)	140, 747, 809
MmeI	TCCRAC	1 cut(s)	701
MnlI	CCTC	7 cut(s)	81, 171, 420, 599, 602, 634, 757
Mox20I	TGGCCA	2 cut(s)	477, 723
MroI	TCCGGA	1 cut(s)	565
MscI	TGGCCA	2 cut(s)	477, 723
MseI	TTAA	2 cut(s)	666, 838
MslI	CAYNNNNRTG	1 cut(s)	656
Msp20I	TGGCCA	2 cut(s)	477, 723
MspI	CCGG	4 cut(s)	83, 253, 566, 585
MspR9I	CCNGG	1 cut(s)	821
MunI	CAATTG	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	821
MwoI	GCNNNNNNNGC	1 cut(s)	425
NdeII	GATC	4 cut(s)	7, 260, 328, 529
NlaIII	CATG	1 cut(s)	709
NlaIV	GGNNCC	2 cut(s)	242, 307
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	157
PflMI	CCANNNNNTGG	1 cut(s)	548
PkrI	GCNGC	2 cut(s)	269, 389
PleI	GAGTC	3 cut(s)	139, 747, 808
PpsI	GAGTC	3 cut(s)	139, 747, 808
PshBI	ATTAAT	1 cut(s)	666
Psp124BI	GAGCTC	1 cut(s)	584
Psp1406I	AACGTT	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	819
PspGI	CCWGG	1 cut(s)	819
PspN4I	GGNNCC	2 cut(s)	242, 307
PspPI	GGNCC	3 cut(s)	306, 611, 695
PstI	CTGCAG	1 cut(s)	392
PstNI	CAGNNNCTG	1 cut(s)	548
PsuI	RGATCY	1 cut(s)	260
RsaI	GTAC	2 cut(s)	377, 514
RsaNI	GTAC	2 cut(s)	376, 513
RseI	CAYNNNNRTG	1 cut(s)	656
SacI	GAGCTC	1 cut(s)	584
SaqAI	TTAA	2 cut(s)	666, 838
SatI	GCNGC	2 cut(s)	268, 388
Sau3AI	GATC	4 cut(s)	7, 260, 328, 529
Sau96I	GGNCC	3 cut(s)	306, 611, 695
ScaI	AGTACT	1 cut(s)	514
SchI	GAGTC	3 cut(s)	140, 747, 809
ScrFI	CCNGG	1 cut(s)	821
SduI	GDGCHC	1 cut(s)	584
SetI	ASST	9 cut(s)	92, 231, 389, 430, 584, 596, 626, 797, 815
SfaNI	GCATC	1 cut(s)	211
SfcI	CTRYAG	1 cut(s)	388
SinI	GGWCC	1 cut(s)	306
SmiMI	CAYNNNNRTG	1 cut(s)	656
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	8 cut(s)	123, 135, 356, 369, 439, 628, 683, 773
SsiI	CCGC	2 cut(s)	250, 268
SstI	GAGCTC	1 cut(s)	584
StyD4I	CCNGG	1 cut(s)	819
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	4 cut(s)	41, 146, 178, 658
TaiI	ACGT	2 cut(s)	231, 596
TaqI	TCGA	3 cut(s)	62, 257, 573
TaqII	GACCGA	1 cut(s)	80
TasI	AATT	8 cut(s)	123, 135, 356, 369, 439, 628, 683, 773
TatI	WGTACW	1 cut(s)	512
TauI	GCSGC	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	157
Tru1I	TTAA	2 cut(s)	666, 838
Tru9I	TTAA	2 cut(s)	666, 838
TscAI	CASTG	3 cut(s)	151, 397, 663
TseI	GCWGC	1 cut(s)	387
TspDTI	ATGAA	4 cut(s)	447, 494, 722, 786
TspGWI	ACGGA	1 cut(s)	393
TspRI	CASTG	3 cut(s)	151, 397, 663
Van91I	CCANNNNNTGG	1 cut(s)	548
VpaK11BI	GGWCC	1 cut(s)	306
VspI	ATTAAT	1 cut(s)	666
XapI	RAATTY	3 cut(s)	369, 683, 773
ZrmI	AGTACT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.