Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009573

Physical Location & Seq

Genomic Coordinates Forward (+)

2402515 .. 2405136

Gene Structure 2622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G016600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGAAGATAAAGGGCAAGACCCTAATAGTCCAGGAAATGGATCGGAAAGAAGCAGTGAGCCAGTAAGGTCGAGATGGATACCAAAGCCAGAGCAAATCCTAATCCTAGAGTCAATTTTCAACAGTGGAATGGTGAATCCTCCCAAAGAAGAAACTGTGAGAATAAGGAAACTTTTAGAGAAATTCGGCACCGTCGGGGATGCAAACGTCTTTTACTGGTTCCAAAACCGAAGGTCGAGATCTCGCCGCCGACAACGGCAGCTGCAGGCCAGCCTTGAACAAAGAAACAATAATACTAAAAGTAATCAAGTTGGTGATCATCAAATGGGTATAAGTAGTGGTGCAATTCAGTATGAAATAAGCTGCAGTCCTCCAGCTCCAGCTCCTGCCATGGCTTTTGGAGCTTCTCCTACTTCTTTTGGCTCTTGTAATTATCTTGTGGGTTCTTCTTCTTCTTCGTCTAGTGGTCATCATCTTATGGCAGATCATGATCAGCAAACGTCTTCTTCTGTTGACCCGTTCTTTTCAGTTTCTGGTCAAATGGGGTTTCCGGAAATCGAGCAAGGCTCTGGTGTAACGTCTGTCTTAGGAGGAGGCCCTTCAGATACCTCAACTTTGCACTTCCAATCTGGTCTCATCACAGTGTTTATTAATGGGGTTCCAGCAGAAGTTCCCAAAGGGCCACTTGACATGAAATCCATGTTTGGTCAAGATGTGCTGTTGGTCCATTCCTCTGGTCTCCCTCTGCCACTCAATGAATTCGGTTTCTTAGCTCACGGCTTGCAGCCTGGTGAAAGCTATTTCCTGGTTTCAAGGACAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048364 GO:0048731 GO:0048830 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

275

Amino Acids

29.63

Weight (kDa)

6.16

Isoelectric Point (pI)

68.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03660 AT3G03660 AT3G03660 AT3G03660 AT5G17810 AT5G17810 AT5G17810
fragaria_vesca	FvH4_1g29830
malus_domestica	MD12G1012600.v1.1 MD14G1010400.v1.1
prunus_persica	Prupe.7G016600_v2.0.a1
pyrus_communis	pycom12g01010
rosa_chinensis	RchiOBHm_Chr3g0495921
rosa_laevigata	RLG00000022580
rosa_multiflora	Rmu_sc0010892.1_g000017
rosa_roxburghii	Rroxscaffold_6G00389910
rosa_rugosa	Rorug03G0277600
rosa_samantha	Rh3AG325000 Rh3BG361000 Rh3CG357300 Rh3DG360600
rosa_wichuraiana	Rw3G028380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	188
AccB7I	CCANNNNNTGG	1 cut(s)	38
AccIII	TCCGGA	1 cut(s)	550
AciI	CCGC	1 cut(s)	247
AclWI	GGATC	1 cut(s)	49
AcsI	RAATTY	2 cut(s)	182, 758
AcuI	CTGAAG	1 cut(s)	585
AfiI	CCNNNNNNNGG	1 cut(s)	38
AgsI	TTSAA	3 cut(s)	121, 278, 813
AjnI	CCWGG	3 cut(s)	31, 787, 804
AluBI	AGCT	7 cut(s)	262, 363, 377, 383, 404, 773, 798
AluI	AGCT	7 cut(s)	262, 363, 377, 383, 404, 773, 798
Alw26I	GTCTC	2 cut(s)	638, 743
AlwI	GGATC	1 cut(s)	49
AlwNI	CAGNNNCTG	2 cut(s)	386, 533
Aor13HI	TCCGGA	1 cut(s)	550
AoxI	GGCC	3 cut(s)	267, 595, 680
ApeKI	GCWGC	4 cut(s)	259, 262, 363, 784
ApoI	RAATTY	2 cut(s)	182, 758
AseI	ATTAAT	1 cut(s)	651
AspS9I	GGNCC	3 cut(s)	596, 680, 724
AsuHPI	GGTGA	3 cut(s)	145, 326, 803
AvaII	GGWCC	1 cut(s)	724
BanI	GGYRCC	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	495
BbvI	GCAGC	4 cut(s)	249, 271, 350, 796
BccI	CCATC	1 cut(s)	69
BceAI	ACGGC	2 cut(s)	272, 793
BciT130I	CCWGG	3 cut(s)	33, 789, 806
BciVI	GTATCC	1 cut(s)	72
BclI	TGATCA	2 cut(s)	316, 490
BcoDI	GTCTC	2 cut(s)	638, 743
BfaI	CTAG	2 cut(s)	107, 462
BfmI	CTRYAG	2 cut(s)	263, 364
BfuI	GTATCC	1 cut(s)	72
BglII	AGATCT	1 cut(s)	239
BisI	GCNGC	5 cut(s)	247, 260, 263, 364, 785
BlsI	GCNGC	5 cut(s)	248, 261, 264, 365, 786
Bme1390I	CCNGG	3 cut(s)	33, 789, 806
Bme18I	GGWCC	1 cut(s)	724
BmgT120I	GGNCC	3 cut(s)	596, 680, 724
BmiI	GGNNCC	3 cut(s)	190, 221, 660
BmrFI	CCNGG	3 cut(s)	33, 789, 806
BmsI	GCATC	1 cut(s)	190
BpiI	GAAGAC	1 cut(s)	495
BplI	GAGNNNNNCTC	2 cut(s)	551, 583
BpmI	CTGGAG	2 cut(s)	357, 363
BsaBI	GATNNNNATC	1 cut(s)	489
BsaI	GGTCTC	2 cut(s)	638, 743
BsaJI	CCNNGG	1 cut(s)	390
BsaWI	WCCGGW	1 cut(s)	550
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse1I	ACTGG	2 cut(s)	62, 221
Bse8I	GATNNNNATC	1 cut(s)	489
BseAI	TCCGGA	1 cut(s)	550
BseBI	CCWGG	3 cut(s)	33, 789, 806
BseDI	CCNNGG	1 cut(s)	390
BseGI	GGATG	1 cut(s)	205
BseJI	GATNNNNATC	1 cut(s)	489
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseNI	ACTGG	2 cut(s)	62, 221
BseRI	GAGGAG	1 cut(s)	606
BseXI	GCAGC	4 cut(s)	249, 271, 350, 796
BshFI	GGCC	3 cut(s)	269, 597, 682
BshNI	GGYRCC	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	551
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	2 cut(s)	638, 743
BsnI	GGCC	3 cut(s)	269, 597, 682
Bso31I	GGTCTC	2 cut(s)	638, 743
Bsp13I	TCCGGA	1 cut(s)	550
Bsp143I	GATC	5 cut(s)	41, 239, 316, 484, 490
Bsp19I	CCATGG	1 cut(s)	390
BspACI	CCGC	1 cut(s)	247
BspANI	GGCC	3 cut(s)	269, 597, 682
BspEI	TCCGGA	1 cut(s)	550
BspHI	TCATGA	1 cut(s)	487
BspLI	GGNNCC	3 cut(s)	190, 221, 660
BspMAI	CTGCAG	2 cut(s)	267, 368
BspPI	GGATC	1 cut(s)	49
BspT107I	GGYRCC	1 cut(s)	188
BspTNI	GGTCTC	2 cut(s)	638, 743
BsrI	ACTGG	2 cut(s)	62, 221
BssECI	CCNNGG	1 cut(s)	390
BssMI	GATC	5 cut(s)	41, 239, 316, 484, 490
BssT1I	CCWWGG	1 cut(s)	390
Bst2UI	CCWGG	3 cut(s)	33, 789, 806
Bst4CI	ACNGT	4 cut(s)	125, 157, 193, 643
BstC8I	GCNNGC	3 cut(s)	267, 271, 782
BstDEI	CTNAG	2 cut(s)	586, 769
BstDSI	CCRYGG	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	5 cut(s)	44, 242, 319, 487, 493
BstMAI	GTCTC	2 cut(s)	638, 743
BstMBI	GATC	5 cut(s)	41, 239, 316, 484, 490
BstMWI	GCNNNNNNNGC	1 cut(s)	401
BstNI	CCWGG	3 cut(s)	33, 789, 806
BstSCI	CCNGG	3 cut(s)	31, 787, 804
BstSFI	CTRYAG	2 cut(s)	263, 364
BstV1I	GCAGC	4 cut(s)	249, 271, 350, 796
BstV2I	GAAGAC	1 cut(s)	495
BstX2I	RGATCY	1 cut(s)	239
BstXI	CCANNNNNNTGG	1 cut(s)	734
BstYI	RGATCY	1 cut(s)	239
BsuI	GTATCC	1 cut(s)	72
BsuRI	GGCC	3 cut(s)	269, 597, 682
BtgI	CCRYGG	1 cut(s)	390
BtsCI	GGATG	1 cut(s)	205
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	3 cut(s)	61, 130, 648
Cac8I	GCNNGC	3 cut(s)	267, 271, 782
CaiI	CAGNNNCTG	2 cut(s)	386, 533
CciI	TCATGA	1 cut(s)	487
Cfr13I	GGNCC	3 cut(s)	596, 680, 724
CviAII	CATG	4 cut(s)	391, 488, 691, 700
DdeI	CTNAG	2 cut(s)	586, 769
DpnI	GATC	5 cut(s)	43, 241, 318, 486, 492
DpnII	GATC	5 cut(s)	41, 239, 316, 484, 490
Eco130I	CCWWGG	1 cut(s)	390
Eco31I	GGTCTC	2 cut(s)	638, 743
Eco47I	GGWCC	1 cut(s)	724
Eco57I	CTGAAG	1 cut(s)	585
EcoO109I	RGGNCCY	1 cut(s)	596
EcoRI	GAATTC	1 cut(s)	758
EcoRII	CCWGG	3 cut(s)	31, 787, 804
EcoT14I	CCWWGG	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	4 cut(s)	394, 491, 694, 703
FaiI	YATR	7 cut(s)	332, 354, 392, 479, 489, 692, 701
FalI	AAGNNNNNCTT	3 cut(s)	669, 701, 805
FatI	CATG	4 cut(s)	390, 487, 690, 699
FbaI	TGATCA	2 cut(s)	316, 490
Fnu4HI	GCNGC	5 cut(s)	247, 260, 263, 364, 785
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	5 cut(s)	247, 260, 263, 364, 785
FspBI	CTAG	2 cut(s)	107, 462
GluI	GCNGC	5 cut(s)	247, 260, 263, 364, 785
GsuI	CTGGAG	2 cut(s)	357, 363
HaeIII	GGCC	3 cut(s)	269, 597, 682
HapII	CCGG	1 cut(s)	551
Hin1II	CATG	4 cut(s)	394, 491, 694, 703
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HinfI	GANTC	2 cut(s)	110, 136
HpaII	CCGG	1 cut(s)	551
HphI	GGTGA	3 cut(s)	145, 326, 803
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	2 cut(s)	46, 604
Hpy188III	TCNNGA	5 cut(s)	72, 237, 488, 551, 710
Hpy8I	GTNNAC	1 cut(s)	514
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	2 cut(s)	225, 609
HpyCH4III	ACNGT	4 cut(s)	125, 157, 193, 643
HpyCH4IV	ACGT	3 cut(s)	207, 500, 578
HpyCH4V	TGCA	6 cut(s)	203, 265, 344, 366, 619, 784
HpyF10VI	GCNNNNNNNGC	1 cut(s)	401
HpyF3I	CTNAG	2 cut(s)	586, 769
HpySE526I	ACGT	3 cut(s)	207, 500, 578
Hsp92II	CATG	4 cut(s)	394, 491, 694, 703
Kpn2I	TCCGGA	1 cut(s)	550
Ksp22I	TGATCA	2 cut(s)	316, 490
Kzo9I	GATC	5 cut(s)	41, 239, 316, 484, 490
LmnI	GCTCC	3 cut(s)	382, 388, 401
Lsp1109I	GCAGC	4 cut(s)	249, 271, 350, 796
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	2 cut(s)	107, 462
MaeII	ACGT	3 cut(s)	207, 500, 578
MaeIII	GTNAC	1 cut(s)	574
MalI	GATC	5 cut(s)	43, 241, 318, 486, 492
MboI	GATC	5 cut(s)	41, 239, 316, 484, 490
MboII	GAAGA	8 cut(s)	17, 161, 438, 441, 444, 447, 495, 498
MflI	RGATCY	1 cut(s)	239
MluCI	AATT	5 cut(s)	114, 182, 345, 430, 758
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	7 cut(s)	150, 381, 584, 587, 619, 742, 753
MroI	TCCGGA	1 cut(s)	550
MseI	TTAA	2 cut(s)	651, 823
MslI	CAYNNNNRTG	1 cut(s)	641
MspA1I	CMGCKG	1 cut(s)	262
MspI	CCGG	1 cut(s)	551
MspR9I	CCNGG	3 cut(s)	33, 789, 806
MvaI	CCWGG	3 cut(s)	33, 789, 806
MwoI	GCNNNNNNNGC	1 cut(s)	401
NcoI	CCATGG	1 cut(s)	390
NdeII	GATC	5 cut(s)	41, 239, 316, 484, 490
NlaIII	CATG	4 cut(s)	394, 491, 694, 703
NlaIV	GGNNCC	3 cut(s)	190, 221, 660
PagI	TCATGA	1 cut(s)	487
PfeI	GAWTC	1 cut(s)	136
PflMI	CCANNNNNTGG	1 cut(s)	38
PfoI	TCCNGGA	1 cut(s)	31
PkrI	GCNGC	5 cut(s)	248, 261, 264, 365, 786
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PshBI	ATTAAT	1 cut(s)	651
Psp6I	CCWGG	3 cut(s)	31, 787, 804
PspGI	CCWGG	3 cut(s)	31, 787, 804
PspN4I	GGNNCC	3 cut(s)	190, 221, 660
PspPI	GGNCC	3 cut(s)	596, 680, 724
PstI	CTGCAG	2 cut(s)	267, 368
PstNI	CAGNNNCTG	2 cut(s)	386, 533
PsuI	RGATCY	1 cut(s)	239
PvuII	CAGCTG	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	641
SaqAI	TTAA	2 cut(s)	651, 823
SatI	GCNGC	5 cut(s)	247, 260, 263, 364, 785
Sau3AI	GATC	5 cut(s)	41, 239, 316, 484, 490
Sau96I	GGNCC	3 cut(s)	596, 680, 724
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	3 cut(s)	33, 789, 806
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	2 cut(s)	263, 364
SinI	GGWCC	1 cut(s)	724
SmiMI	CAYNNNNRTG	1 cut(s)	641
Sse9I	AATT	5 cut(s)	114, 182, 345, 430, 758
SsiI	CCGC	1 cut(s)	247
SspMI	CTAG	2 cut(s)	107, 462
StyD4I	CCNGG	3 cut(s)	31, 787, 804
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	4 cut(s)	125, 157, 193, 643
TaiI	ACGT	3 cut(s)	210, 503, 581
TaqI	TCGA	3 cut(s)	71, 236, 558
TasI	AATT	5 cut(s)	114, 182, 345, 430, 758
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	2 cut(s)	651, 823
Tru9I	TTAA	2 cut(s)	651, 823
TscAI	CASTG	3 cut(s)	61, 130, 648
TseI	GCWGC	4 cut(s)	259, 262, 363, 784
TspDTI	ATGAA	3 cut(s)	369, 707, 771
TspRI	CASTG	3 cut(s)	61, 130, 648
Van91I	CCANNNNNTGG	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	724
VspI	ATTAAT	1 cut(s)	651
XapI	RAATTY	2 cut(s)	182, 758
XspI	CTAG	2 cut(s)	107, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.