Rh3DG360600

WUSCHEL-related homeobox

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0009573
Physical Location & Seq
Reverse (-)
44431920 .. 44434396
2477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG360600.1

Sequence Viewer

Length: 813 bp
ATGGAAGATCATCAAGGCCAGGAGGCCAAAGAGCCAAACAGTCCAAACAGTAATGGCTCCTCAGAGAGAAGTGAACCAGTAAGGTCAAGGTGGATTCCGAAACCAGAGCAAATCCTAATTCTGGAGTCTATTTTCAATAGTGGAATGGTAAATCCTCCGAAAGAAGAGACCGTGAGGATAAGAAAACTGCTAGAGAAATTCGGGTCGGTTGGAGATGCAAACGTCTTTTACTGGTTCCAAAACCGACGGTCAAGATCCCGTCGCCGCCAACGGCAGTTGCAAGCCAGCCTTGAGCAGAGGAACCAAGCAGCAGCTGATCAACAAGTTGGTGGTGCAATTCAGTATGGAAGCTCTAGTACTACTAGTTTCAGTGCTCCACCACCACCACCACCAGCTATGGCTTTTGGAGCTTCTACACCTTTGACTTTTGGCTCTAATTATGATCTTGTGGGCGATTCTTCTTCATCTTCTTGTGCTGCTATGGCAACAGATGATCACTTCTTTTCAGTTTCCGGTCAAATGGGTTTTCCAGATATTGAGCACAGTTCCTCTGGTGTAACGTCTGTGTTAGGTCCTTCAGATGCCTCAAGTTTGCACTTCCAATCCGGTGTGAATCTGATGATGACAGTATTTATTAATGGGGTTCCAACAGAAGTTCCAAGAGGGCCACTTGACATGAAAGCCATGTTTGGCACTCAAGATGTGTTGTTGGTTCATTCTTCTGGAGTTCCACTTCCAATCAATGAGTTTGGTTTCTTAGCCCACAGCTTGCAGCCTGGTGAAAGCTATTTCCTGGTTTCCAGACCAAATTAA

Protein Analysis

270

Amino Acids

29.3

Weight (kDa)

5.69

Isoelectric Point (pI)

66.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 28 - 88 2.5e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03660 AT3G03660 AT3G03660 AT3G03660 AT5G17810 AT5G17810 AT5G17810
fragaria_vesca FvH4_1g29830
malus_domestica MD12G1012600.v1.1 MD14G1010400.v1.1
prunus_persica Prupe.7G016600_v2.0.a1
pyrus_communis pycom12g01010
rosa_chinensis RchiOBHm_Chr3g0495921
rosa_laevigata RLG00000022580
rosa_multiflora Rmu_sc0010892.1_g000017
rosa_roxburghii Rroxscaffold_6G00389910
rosa_rugosa Rorug03G0277600
rosa_samantha Rh3AG325000 Rh3BG361000 Rh3CG357300 Rh3DG360600
rosa_wichuraiana Rw3G028380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 265
AclWI GGATC 1 cut(s) 249
AcsI RAATTY 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 561
AfaI GTAC 1 cut(s) 358
AfiI CCNNNNNNNGG 1 cut(s) 121
AgsI TTSAA 1 cut(s) 136
AhlI ACTAGT 1 cut(s) 362
AjnI CCWGG 3 cut(s) 18, 775, 792
AluBI AGCT 6 cut(s) 314, 351, 395, 410, 768, 786
AluI AGCT 6 cut(s) 314, 351, 395, 410, 768, 786
Alw21I GWGCWC 2 cut(s) 376, 543
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 1 cut(s) 249
AlwNI CAGNNNCTG 1 cut(s) 314
AoxI GGCC 3 cut(s) 16, 24, 665
ApeKI GCWGC 4 cut(s) 308, 311, 476, 772
ApoI RAATTY 1 cut(s) 197
AseI ATTAAT 1 cut(s) 636
AspS9I GGNCC 2 cut(s) 572, 665
AsuHPI GGTGA 1 cut(s) 791
AvaII GGWCC 1 cut(s) 572
BarI GAAGNNNNNNTAC 2 cut(s) 340, 372
Bbv12I GWGCWC 2 cut(s) 376, 543
BbvI GCAGC 4 cut(s) 320, 323, 463, 784
BceAI ACGGC 1 cut(s) 287
BciT130I CCWGG 3 cut(s) 20, 777, 794
BclI TGATCA 2 cut(s) 316, 493
BcoDI GTCTC 1 cut(s) 161
BcuI ACTAGT 1 cut(s) 362
BfaI CTAG 3 cut(s) 191, 354, 363
BisI GCNGC 5 cut(s) 265, 309, 312, 477, 773
BlsI GCNGC 5 cut(s) 266, 310, 313, 478, 774
BmcAI AGTACT 1 cut(s) 358
Bme1390I CCNGG 3 cut(s) 20, 777, 794
Bme18I GGWCC 1 cut(s) 572
BmgT120I GGNCC 2 cut(s) 572, 665
BmiI GGNNCC 4 cut(s) 58, 236, 302, 645
BmrFI CCNGG 3 cut(s) 20, 777, 794
BmsI GCATC 2 cut(s) 205, 571
BpmI CTGGAG 2 cut(s) 143, 744
BpuEI CTTGAG 3 cut(s) 311, 571, 681
BsaI GGTCTC 1 cut(s) 161
BsaWI WCCGGW 2 cut(s) 512, 605
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse1I ACTGG 2 cut(s) 77, 236
BseBI CCWGG 3 cut(s) 20, 777, 794
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 2 cut(s) 77, 236
BseRI GAGGAG 1 cut(s) 49
BseXI GCAGC 4 cut(s) 320, 323, 463, 784
BshFI GGCC 3 cut(s) 18, 26, 667
BsiHKAI GWGCWC 2 cut(s) 376, 543
BsiSI CCGG 2 cut(s) 513, 606
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 161
BsnI GGCC 3 cut(s) 18, 26, 667
Bso31I GGTCTC 1 cut(s) 161
Bsp1286I GDGCHC 2 cut(s) 376, 543
Bsp143I GATC 5 cut(s) 7, 254, 316, 442, 493
BspACI CCGC 1 cut(s) 265
BspANI GGCC 3 cut(s) 18, 26, 667
BspCNI CTCAG 1 cut(s) 74
BspLI GGNNCC 4 cut(s) 58, 236, 302, 645
BspPI GGATC 1 cut(s) 249
BspTNI GGTCTC 1 cut(s) 161
BsrI ACTGG 2 cut(s) 77, 236
BssMI GATC 5 cut(s) 7, 254, 316, 442, 493
Bst2UI CCWGG 3 cut(s) 20, 777, 794
Bst4CI ACNGT 6 cut(s) 41, 50, 172, 249, 545, 628
Bst6I CTCTTC 1 cut(s) 159
BstC8I GCNNGC 3 cut(s) 282, 286, 770
BstDEI CTNAG 2 cut(s) 61, 757
BstKTI GATC 5 cut(s) 10, 257, 319, 445, 496
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 5 cut(s) 7, 254, 316, 442, 493
BstMWI GCNNNNNNNGC 2 cut(s) 407, 482
BstNI CCWGG 3 cut(s) 20, 777, 794
BstSCI CCNGG 3 cut(s) 18, 775, 792
BstV1I GCAGC 4 cut(s) 320, 323, 463, 784
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BsuRI GGCC 3 cut(s) 18, 26, 667
BtsIMutI CAGTG 1 cut(s) 376
Cac8I GCNNGC 3 cut(s) 282, 286, 770
CaiI CAGNNNCTG 1 cut(s) 314
Cfr13I GGNCC 2 cut(s) 572, 665
Csp6I GTAC 1 cut(s) 357
CviAII CATG 2 cut(s) 676, 685
CviQI GTAC 1 cut(s) 357
DdeI CTNAG 2 cut(s) 61, 757
DpnI GATC 5 cut(s) 9, 256, 318, 444, 495
DpnII GATC 5 cut(s) 7, 254, 316, 442, 493
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 572
Eco57I CTGAAG 1 cut(s) 561
EcoO109I RGGNCCY 1 cut(s) 572
EcoRII CCWGG 3 cut(s) 18, 775, 792
FaeI CATG 2 cut(s) 679, 688
FaiI YATR 6 cut(s) 345, 398, 441, 482, 677, 686
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FatI CATG 2 cut(s) 675, 684
FbaI TGATCA 2 cut(s) 316, 493
Fnu4HI GCNGC 5 cut(s) 265, 309, 312, 477, 773
Fsp4HI GCNGC 5 cut(s) 265, 309, 312, 477, 773
FspBI CTAG 3 cut(s) 191, 354, 363
GluI GCNGC 5 cut(s) 265, 309, 312, 477, 773
GsuI CTGGAG 2 cut(s) 143, 744
HaeIII GGCC 3 cut(s) 18, 26, 667
HapII CCGG 2 cut(s) 513, 606
Hin1II CATG 2 cut(s) 679, 688
HinfI GANTC 4 cut(s) 94, 125, 455, 613
HpaII CCGG 2 cut(s) 513, 606
HphI GGTGA 1 cut(s) 791
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 5 cut(s) 64, 99, 159, 580, 618
Hpy188III TCNNGA 6 cut(s) 122, 252, 530, 698, 723, 801
Hpy8I GTNNAC 1 cut(s) 74
Hpy99I CGWCG 2 cut(s) 249, 264
HpyAV CCTTC 1 cut(s) 585
HpyCH4III ACNGT 6 cut(s) 41, 50, 172, 249, 545, 628
HpyCH4IV ACGT 2 cut(s) 222, 560
HpyCH4V TGCA 5 cut(s) 218, 280, 335, 595, 772
HpyF10VI GCNNNNNNNGC 2 cut(s) 407, 482
HpyF3I CTNAG 2 cut(s) 61, 757
HpySE526I ACGT 2 cut(s) 222, 560
Hsp92II CATG 2 cut(s) 679, 688
Ksp22I TGATCA 2 cut(s) 316, 493
Kzo9I GATC 5 cut(s) 7, 254, 316, 442, 493
LmnI GCTCC 3 cut(s) 62, 379, 407
Lsp1109I GCAGC 4 cut(s) 320, 323, 463, 784
LweI GCATC 2 cut(s) 205, 571
MaeI CTAG 3 cut(s) 191, 354, 363
MaeII ACGT 2 cut(s) 222, 560
MaeIII GTNAC 1 cut(s) 556
MalI GATC 5 cut(s) 9, 256, 318, 444, 495
MboI GATC 5 cut(s) 7, 254, 316, 442, 493
MboII GAAGA 6 cut(s) 17, 176, 450, 453, 459, 711
MflI RGATCY 1 cut(s) 254
MhlI GDGCHC 2 cut(s) 376, 543
MluCI AATT 5 cut(s) 117, 197, 336, 436, 808
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 2 cut(s) 190, 671
MnlI CCTC 8 cut(s) 16, 70, 165, 168, 291, 559, 595, 656
MseI TTAA 2 cut(s) 636, 811
MspA1I CMGCKG 1 cut(s) 314
MspI CCGG 2 cut(s) 513, 606
MspR9I CCNGG 3 cut(s) 20, 777, 794
MvaI CCWGG 3 cut(s) 20, 777, 794
MwoI GCNNNNNNNGC 2 cut(s) 407, 482
NdeII GATC 5 cut(s) 7, 254, 316, 442, 493
NlaIII CATG 2 cut(s) 679, 688
NlaIV GGNNCC 4 cut(s) 58, 236, 302, 645
PfeI GAWTC 3 cut(s) 94, 455, 613
PkrI GCNGC 5 cut(s) 266, 310, 313, 478, 774
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PpuMI RGGWCCY 1 cut(s) 572
PshBI ATTAAT 1 cut(s) 636
Psp5II RGGWCCY 1 cut(s) 572
Psp6I CCWGG 3 cut(s) 18, 775, 792
PspGI CCWGG 3 cut(s) 18, 775, 792
PspN4I GGNNCC 4 cut(s) 58, 236, 302, 645
PspPI GGNCC 2 cut(s) 572, 665
PspPPI RGGWCCY 1 cut(s) 572
PstNI CAGNNNCTG 1 cut(s) 314
PsuI RGATCY 1 cut(s) 254
PvuII CAGCTG 1 cut(s) 314
RsaI GTAC 1 cut(s) 358
RsaNI GTAC 1 cut(s) 357
SaqAI TTAA 2 cut(s) 636, 811
SatI GCNGC 5 cut(s) 265, 309, 312, 477, 773
Sau3AI GATC 5 cut(s) 7, 254, 316, 442, 493
Sau96I GGNCC 2 cut(s) 572, 665
ScaI AGTACT 1 cut(s) 358
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 3 cut(s) 20, 777, 794
SduI GDGCHC 2 cut(s) 376, 543
SfaNI GCATC 2 cut(s) 205, 571
SinI GGWCC 1 cut(s) 572
SmlI CTYRAG 3 cut(s) 290, 586, 696
SmoI CTYRAG 3 cut(s) 290, 586, 696
SpeI ACTAGT 1 cut(s) 362
Sse9I AATT 5 cut(s) 117, 197, 336, 436, 808
SsiI CCGC 1 cut(s) 265
SspMI CTAG 3 cut(s) 191, 354, 363
StyD4I CCNGG 3 cut(s) 18, 775, 792
TaaI ACNGT 6 cut(s) 41, 50, 172, 249, 545, 628
TaiI ACGT 2 cut(s) 225, 563
TasI AATT 5 cut(s) 117, 197, 336, 436, 808
TatI WGTACW 1 cut(s) 356
TauI GCSGC 1 cut(s) 267
TfiI GAWTC 3 cut(s) 94, 455, 613
Tru1I TTAA 2 cut(s) 636, 811
Tru9I TTAA 2 cut(s) 636, 811
TscAI CASTG 1 cut(s) 376
TseI GCWGC 4 cut(s) 308, 311, 476, 772
TspDTI ATGAA 3 cut(s) 453, 692, 704
TspRI CASTG 1 cut(s) 376
VpaK11BI GGWCC 1 cut(s) 572
VspI ATTAAT 1 cut(s) 636
XapI RAATTY 1 cut(s) 197
XspI CTAG 3 cut(s) 191, 354, 363
ZrmI AGTACT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.