FvH4_1g29830

WUSCHEL-related homeobox

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0009573
Physical Location & Seq
Forward (+)
23461440 .. 23464551
3112 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29830.t1

Sequence Viewer

Length: 840 bp
ATGGAAGATCATCAAGGCCAAGCAGGCGGAGGCCAAGAGGCCAAAGAGCCAAACAGTCATTCTTCCTCAGAGAAAAGTACTGAACCAGTAAGGTCAAGGTGGATACCGAAGCCAGAGCAAATCCTAATTCTCGAGTCTATTTTCAACAGTGGAATGGTGAATCCGCCGAAAGAAGAGACTGTGAGAATAAGAAAACTGCTAGAGAAATTCGGGTCGGTTGGGGATGCAAACGTCTTCTACTGGTTCCAAAACCGACGGTCAAGATCCCGTCGCCGACAACGGCAGTTGCAAGCCAGCCTTGAGCAGAGGAACCAATTAGCAGCCGCTGATCAACAAGTTGGTGGTGCAATTCAATATGGAAGCTGCTCTAGTGCTACTAGTTTTAGTGCTCCACCATCACCACCGCCCCCAGCAGCAGCTATGGCTTTTGGAGCTTCTACTCCTTCGACTTTTGTTTCTAATTATGATCTTGTGGGCGGTTCTTCTTCGTCTTCTTGTGCTCCTATGGCAGCCGATGACCATTTCTTTTCCGTTTCCGGTCAAATGGGTTTTCCAGAAATCGAGCAGCACAGTTCCTCTGGTGAAACGTCTGCGTTAGGTCCTTCAGATGCCTCAAGTTTGCACTTCCAATCTGGTGTGAATCTAATGATGACAGTGTTTATTAATGGGGTTGCATCAGAAGTTCCAAGAGGGCCGCTCGACATGAAAGCCATGTTTGGCACTCAAGATGTGTTGCTGGTTCATTCCTCTGGAGTTCCACTCCCAATCAATGAGTTTGGTTGCTTAGCCCACAGCTTGCAGCCTGGTGAAAGCTATTTCCTGGTCTCCAGACCAACTTAA

Protein Analysis

280

Amino Acids

29.91

Weight (kDa)

5.81

Isoelectric Point (pI)

68.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 31 - 91 2.7e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03660 AT3G03660 AT3G03660 AT3G03660 AT5G17810 AT5G17810 AT5G17810
fragaria_vesca FvH4_1g29830
malus_domestica MD12G1012600.v1.1 MD14G1010400.v1.1
prunus_persica Prupe.7G016600_v2.0.a1
pyrus_communis pycom12g01010
rosa_chinensis RchiOBHm_Chr3g0495921
rosa_laevigata RLG00000022580
rosa_multiflora Rmu_sc0010892.1_g000017
rosa_roxburghii Rroxscaffold_6G00389910
rosa_rugosa Rorug03G0277600
rosa_samantha Rh3AG325000 Rh3BG361000 Rh3CG357300 Rh3DG360600
rosa_wichuraiana Rw3G028380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 697
AciI CCGC 6 cut(s) 27, 164, 324, 404, 477, 695
AclWI GGATC 1 cut(s) 258
AcsI RAATTY 1 cut(s) 206
AcuI CTGAAG 1 cut(s) 588
AfaI GTAC 1 cut(s) 79
AgsI TTSAA 2 cut(s) 145, 353
AhlI ACTAGT 1 cut(s) 377
AjnI CCWGG 2 cut(s) 802, 819
AjuI GAANNNNNNNTTGG 2 cut(s) 43, 75
AluBI AGCT 5 cut(s) 363, 419, 434, 795, 813
AluI AGCT 5 cut(s) 363, 419, 434, 795, 813
Alw21I GWGCWC 2 cut(s) 391, 502
Alw26I GTCTC 2 cut(s) 170, 829
AlwI GGATC 1 cut(s) 258
AlwNI CAGNNNCTG 1 cut(s) 326
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 4 cut(s) 16, 31, 39, 692
ApeKI GCWGC 7 cut(s) 320, 363, 413, 416, 509, 565, 799
ApoI RAATTY 1 cut(s) 206
AseI ATTAAT 1 cut(s) 663
AspS9I GGNCC 2 cut(s) 599, 692
AsuHPI GGTGA 4 cut(s) 169, 390, 593, 818
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 1 cut(s) 599
BbsI GAAGAC 2 cut(s) 226, 483
Bbv12I GWGCWC 2 cut(s) 391, 502
BbvI GCAGC 7 cut(s) 332, 350, 425, 428, 521, 577, 811
BccI CCATC 1 cut(s) 403
BceAI ACGGC 1 cut(s) 296
BciT130I CCWGG 2 cut(s) 804, 821
BciVI GTATCC 1 cut(s) 96
BclI TGATCA 1 cut(s) 328
BcoDI GTCTC 2 cut(s) 170, 829
BcuI ACTAGT 1 cut(s) 377
BfaI CTAG 3 cut(s) 200, 369, 378
BfuI GTATCC 1 cut(s) 96
BglI GCCNNNNNGGC 1 cut(s) 24
BisI GCNGC 9 cut(s) 321, 324, 364, 414, 417, 510, 566, 695, 800
BlpI GCTNAGC 1 cut(s) 784
BlsI GCNGC 9 cut(s) 322, 325, 365, 415, 418, 511, 567, 696, 801
BmcAI AGTACT 1 cut(s) 79
Bme1390I CCNGG 2 cut(s) 804, 821
Bme18I GGWCC 1 cut(s) 599
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 2 cut(s) 599, 692
BmiI GGNNCC 2 cut(s) 245, 311
BmrFI CCNGG 2 cut(s) 804, 821
BmsI GCATC 3 cut(s) 214, 598, 683
BpiI GAAGAC 2 cut(s) 226, 483
BplI GAGNNNNNCTC 4 cut(s) 681, 713, 744, 776
BpmI CTGGAG 2 cut(s) 771, 811
Bpu1102I GCTNAGC 1 cut(s) 784
BpuEI CTTGAG 3 cut(s) 320, 598, 708
BsaI GGTCTC 1 cut(s) 829
BsaWI WCCGGW 1 cut(s) 536
Bse1I ACTGG 2 cut(s) 86, 245
BseBI CCWGG 2 cut(s) 804, 821
BseGI GGATG 1 cut(s) 229
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 2 cut(s) 86, 245
BseXI GCAGC 7 cut(s) 332, 350, 425, 428, 521, 577, 811
BseYI CCCAGC 1 cut(s) 409
BshFI GGCC 4 cut(s) 18, 33, 41, 694
BsiHKAI GWGCWC 2 cut(s) 391, 502
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 1 cut(s) 537
BsmAI GTCTC 2 cut(s) 170, 829
BsnI GGCC 4 cut(s) 18, 33, 41, 694
Bso31I GGTCTC 1 cut(s) 829
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 2 cut(s) 391, 502
Bsp143I GATC 4 cut(s) 7, 263, 328, 466
Bsp1720I GCTNAGC 1 cut(s) 784
BspACI CCGC 6 cut(s) 27, 164, 324, 404, 477, 695
BspANI GGCC 4 cut(s) 18, 33, 41, 694
BspCNI CTCAG 1 cut(s) 80
BspLI GGNNCC 2 cut(s) 245, 311
BspPI GGATC 1 cut(s) 258
BspTNI GGTCTC 1 cut(s) 829
BsrBI CCGCTC 1 cut(s) 697
BsrI ACTGG 2 cut(s) 86, 245
BssMI GATC 4 cut(s) 7, 263, 328, 466
Bst2UI CCWGG 2 cut(s) 804, 821
Bst4CI ACNGT 6 cut(s) 56, 149, 181, 258, 572, 655
Bst6I CTCTTC 1 cut(s) 168
BstC8I GCNNGC 4 cut(s) 25, 291, 295, 797
BstDEI CTNAG 2 cut(s) 67, 784
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 4 cut(s) 10, 266, 331, 469
BstMAI GTCTC 2 cut(s) 170, 829
BstMBI GATC 4 cut(s) 7, 263, 328, 466
BstMWI GCNNNNNNNGC 4 cut(s) 24, 422, 431, 506
BstNI CCWGG 2 cut(s) 804, 821
BstSCI CCNGG 2 cut(s) 802, 819
BstV1I GCAGC 7 cut(s) 332, 350, 425, 428, 521, 577, 811
BstV2I GAAGAC 2 cut(s) 226, 483
BstX2I RGATCY 1 cut(s) 263
BstYI RGATCY 1 cut(s) 263
BsuI GTATCC 1 cut(s) 96
BsuRI GGCC 4 cut(s) 18, 33, 41, 694
BtsCI GGATG 1 cut(s) 229
BtsIMutI CAGTG 2 cut(s) 154, 660
Cac8I GCNNGC 4 cut(s) 25, 291, 295, 797
CaiI CAGNNNCTG 1 cut(s) 326
Cfr13I GGNCC 2 cut(s) 599, 692
Csp6I GTAC 1 cut(s) 78
CviAII CATG 2 cut(s) 703, 712
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 2 cut(s) 67, 784
DpnI GATC 4 cut(s) 9, 265, 330, 468
DpnII GATC 4 cut(s) 7, 263, 328, 466
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
EciI GGCGGA 2 cut(s) 42, 153
Eco31I GGTCTC 1 cut(s) 829
Eco47I GGWCC 1 cut(s) 599
Eco57I CTGAAG 1 cut(s) 588
Eco88I CYCGRG 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 599
EcoRII CCWGG 2 cut(s) 802, 819
FaeI CATG 2 cut(s) 706, 715
FaiI YATR 6 cut(s) 357, 422, 465, 506, 704, 713
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FatI CATG 2 cut(s) 702, 711
FbaI TGATCA 1 cut(s) 328
Fnu4HI GCNGC 9 cut(s) 321, 324, 364, 414, 417, 510, 566, 695, 800
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 9 cut(s) 321, 324, 364, 414, 417, 510, 566, 695, 800
FspBI CTAG 3 cut(s) 200, 369, 378
GluI GCNGC 9 cut(s) 321, 324, 364, 414, 417, 510, 566, 695, 800
GsaI CCCAGC 1 cut(s) 413
GsuI CTGGAG 2 cut(s) 771, 811
HaeIII GGCC 4 cut(s) 18, 33, 41, 694
HapII CCGG 1 cut(s) 537
Hin1II CATG 2 cut(s) 706, 715
HinfI GANTC 3 cut(s) 134, 160, 640
HpaII CCGG 1 cut(s) 537
HphI GGTGA 4 cut(s) 169, 390, 593, 818
Hpy188I TCNGA 3 cut(s) 70, 607, 679
Hpy188III TCNNGA 6 cut(s) 131, 261, 554, 725, 750, 828
Hpy99I CGWCG 2 cut(s) 258, 273
HpyAV CCTTC 2 cut(s) 453, 612
HpyCH4III ACNGT 6 cut(s) 56, 149, 181, 258, 572, 655
HpyCH4IV ACGT 2 cut(s) 231, 587
HpyCH4V TGCA 6 cut(s) 227, 289, 347, 622, 674, 799
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 422, 431, 506
HpyF3I CTNAG 2 cut(s) 67, 784
HpySE526I ACGT 2 cut(s) 231, 587
Hsp92II CATG 2 cut(s) 706, 715
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 4 cut(s) 7, 263, 328, 466
LmnI GCTCC 3 cut(s) 394, 431, 505
Lsp1109I GCAGC 7 cut(s) 332, 350, 425, 428, 521, 577, 811
LweI GCATC 3 cut(s) 214, 598, 683
MaeI CTAG 3 cut(s) 200, 369, 378
MaeII ACGT 2 cut(s) 231, 587
MalI GATC 4 cut(s) 9, 265, 330, 468
MbiI CCGCTC 1 cut(s) 697
MboI GATC 4 cut(s) 7, 263, 328, 466
MboII GAAGA 7 cut(s) 17, 54, 185, 226, 474, 477, 483
MflI RGATCY 1 cut(s) 263
MhlI GDGCHC 2 cut(s) 391, 502
MluCI AATT 5 cut(s) 126, 206, 314, 348, 460
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 8 cut(s) 23, 31, 76, 300, 586, 622, 683, 757
MseI TTAA 2 cut(s) 663, 838
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 1 cut(s) 537
MspR9I CCNGG 2 cut(s) 804, 821
MvaI CCWGG 2 cut(s) 804, 821
MwoI GCNNNNNNNGC 4 cut(s) 24, 422, 431, 506
NdeII GATC 4 cut(s) 7, 263, 328, 466
NlaIII CATG 2 cut(s) 706, 715
NlaIV GGNNCC 2 cut(s) 245, 311
PaeR7I CTCGAG 1 cut(s) 131
PfeI GAWTC 2 cut(s) 160, 640
PkrI GCNGC 9 cut(s) 322, 325, 365, 415, 418, 511, 567, 696, 801
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PpuMI RGGWCCY 1 cut(s) 599
PshBI ATTAAT 1 cut(s) 663
Psp5II RGGWCCY 1 cut(s) 599
Psp6I CCWGG 2 cut(s) 802, 819
PspFI CCCAGC 1 cut(s) 409
PspGI CCWGG 2 cut(s) 802, 819
PspN4I GGNNCC 2 cut(s) 245, 311
PspPI GGNCC 2 cut(s) 599, 692
PspPPI RGGWCCY 1 cut(s) 599
PstNI CAGNNNCTG 1 cut(s) 326
PsuI RGATCY 1 cut(s) 263
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
SaqAI TTAA 2 cut(s) 663, 838
SatI GCNGC 9 cut(s) 321, 324, 364, 414, 417, 510, 566, 695, 800
Sau3AI GATC 4 cut(s) 7, 263, 328, 466
Sau96I GGNCC 2 cut(s) 599, 692
ScaI AGTACT 1 cut(s) 79
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 2 cut(s) 804, 821
SduI GDGCHC 2 cut(s) 391, 502
SfaNI GCATC 3 cut(s) 214, 598, 683
Sfr274I CTCGAG 1 cut(s) 131
SinI GGWCC 1 cut(s) 599
SlaI CTCGAG 1 cut(s) 131
SmlI CTYRAG 4 cut(s) 131, 299, 613, 723
SmoI CTYRAG 4 cut(s) 131, 299, 613, 723
SpeI ACTAGT 1 cut(s) 377
Sse9I AATT 5 cut(s) 126, 206, 314, 348, 460
SsiI CCGC 6 cut(s) 27, 164, 324, 404, 477, 695
SspMI CTAG 3 cut(s) 200, 369, 378
StyD4I CCNGG 2 cut(s) 802, 819
TaaI ACNGT 6 cut(s) 56, 149, 181, 258, 572, 655
TaiI ACGT 2 cut(s) 234, 590
TaqI TCGA 4 cut(s) 132, 446, 561, 699
TasI AATT 5 cut(s) 126, 206, 314, 348, 460
TatI WGTACW 1 cut(s) 77
TauI GCSGC 2 cut(s) 326, 697
TfiI GAWTC 2 cut(s) 160, 640
Tru1I TTAA 2 cut(s) 663, 838
Tru9I TTAA 2 cut(s) 663, 838
TscAI CASTG 2 cut(s) 154, 660
TseI GCWGC 7 cut(s) 320, 363, 413, 416, 509, 565, 799
TspDTI ATGAA 2 cut(s) 719, 731
TspGWI ACGGA 1 cut(s) 520
TspRI CASTG 2 cut(s) 154, 660
VpaK11BI GGWCC 1 cut(s) 599
VspI ATTAAT 1 cut(s) 663
XapI RAATTY 1 cut(s) 206
XhoI CTCGAG 1 cut(s) 131
XspI CTAG 3 cut(s) 200, 369, 378
ZrmI AGTACT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.