Rroxscaffold_6G00389910

WUSCHEL-related homeobox

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0009573
Physical Location & Seq
Forward (+)
4032608 .. 4065164
32557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00389910.1

Sequence Viewer

Length: 1113 bp
ATGGAAGATCATCAAGGCCAAGGCGGAGGCCAAGAGGCCAAAGAGCCAAACAGTCCAAACAGTAATGGCTCCTCAGAGAGAAGTGAACCAGTAAGGTCAAGGTGGATTCCGAAACCAGAGCAAATCCTAATTCTGGAGTCTATTTTCAATAGTGGAATGGTAAATCCTCCAAAAGAAGAGACCGTGAGGATAAGAAAACTGCTAGAGAAATTCGGGTCGGTTGGAGATGCAAACGTCTTTTACTGGTTCCAAAACCGACGGTCAAGATCCCGTCGCCGCCAACGGCAGTTGCAAGCCAGCCTTGAGCAGAGGAACCAAGCAGCAGCTGATCAACAAGTTGGTGGTGCAATTCAGTATGGAAGCTCTAGTACTACTAGTTTCAGTGCTCCACCACCACCACCACCAGCTATGGCTTTTGGAGCTTCTACACCTTCGACTTTTGGCTCTAATTATGATCTTGTGGGCGATTCTTCTTCATCTTCTTGTGCTGCTATGGCAACAGATGATCACTTCTTTTCAGTTTCCGGTCAAATGGGTTTTCCAGATATTGAGCACAGTTCCTCCGGTGTAACGTCTGTGTTAGGTCCTTCAGATGCCTCAAGTTTGCACTTCCAATCCGGTGTGAATCTGATGATGACAGTATTTATTAATGGGGTTCCAACAGAAGTTCCAAGAGGGCCACTTGACATGAAAGCCATGTTTGGCACTCAAGATGTGTTGTTGGTTCATTCTTCTGGAGTTCCACTTCCAATCAATGAGTTTGGTTTCTTAGCCCACAGCTTGCAGCCTGGTGAAAGCTATTTCCTGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCGCACATGAGTCAGAATTGAAGTACATCGTAATCAAGCCACAAAAAGATGTGACCTCTAAGGATCTTCACCAAGTGAATCAAGAGATGAAGAAGATGAAAGGAAAGGAAGAAGATATGCAAGTTAAGAGAAATAGGATGGTGATCGGGCTGCTTAGGGCAGTGGTACTCGAGTCACGGCGATTAGACCCGAACCAGCCGAGGAGGGAGGAAGCAACCAAGCGCACCGGAGAGACAAATGGGTACAAAGAGTTGGCCTCATTTGGACGGTAA

Protein Analysis

370

Amino Acids

40.6

Weight (kDa)

7.11

Isoelectric Point (pI)

59.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 32 - 92 4.3e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03660 AT3G03660 AT3G03660 AT3G03660 AT5G17810 AT5G17810 AT5G17810
fragaria_vesca FvH4_1g29830
malus_domestica MD12G1012600.v1.1 MD14G1010400.v1.1
prunus_persica Prupe.7G016600_v2.0.a1
pyrus_communis pycom12g01010
rosa_chinensis RchiOBHm_Chr3g0495921
rosa_laevigata RLG00000022580
rosa_multiflora Rmu_sc0010892.1_g000017
rosa_roxburghii Rroxscaffold_6G00389910
rosa_rugosa Rorug03G0277600
rosa_samantha Rh3AG325000 Rh3BG361000 Rh3CG357300 Rh3DG360600
rosa_wichuraiana Rw3G028380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 844
AciI CCGC 2 cut(s) 24, 277
AclWI GGATC 2 cut(s) 261, 912
AcsI RAATTY 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 573
AdeI CACNNNGTG 1 cut(s) 916
AfaI GTAC 4 cut(s) 370, 866, 1008, 1085
AfiI CCNNNNNNNGG 1 cut(s) 133
AgsI TTSAA 2 cut(s) 148, 862
AhlI ACTAGT 1 cut(s) 374
AjnI CCWGG 2 cut(s) 787, 804
AluBI AGCT 6 cut(s) 326, 363, 407, 422, 780, 798
AluI AGCT 6 cut(s) 326, 363, 407, 422, 780, 798
Alw21I GWGCWC 2 cut(s) 388, 555
Alw26I GTCTC 3 cut(s) 173, 814, 1067
AlwI GGATC 2 cut(s) 261, 912
AlwNI CAGNNNCTG 1 cut(s) 326
Ama87I CYCGRG 1 cut(s) 1010
AoxI GGCC 5 cut(s) 16, 28, 36, 677, 1095
ApeKI GCWGC 5 cut(s) 320, 323, 488, 784, 991
ApoI RAATTY 1 cut(s) 209
AseI ATTAAT 1 cut(s) 648
AspLEI GCGC 2 cut(s) 845, 1065
AspS9I GGNCC 2 cut(s) 584, 677
AsuHPI GGTGA 3 cut(s) 803, 902, 994
AvaI CYCGRG 1 cut(s) 1010
AvaII GGWCC 1 cut(s) 584
BaeI ACNNNNGTAYC 2 cut(s) 998, 1031
BarI GAAGNNNNNNTAC 2 cut(s) 352, 384
Bbv12I GWGCWC 2 cut(s) 388, 555
BbvI GCAGC 5 cut(s) 332, 335, 475, 796, 978
BccI CCATC 1 cut(s) 973
BceAI ACGGC 2 cut(s) 299, 1034
BciT130I CCWGG 2 cut(s) 789, 806
BclI TGATCA 2 cut(s) 328, 505
BcoDI GTCTC 3 cut(s) 173, 814, 1067
BcuI ACTAGT 1 cut(s) 374
BfaI CTAG 3 cut(s) 203, 366, 375
BisI GCNGC 6 cut(s) 277, 321, 324, 489, 785, 992
BlsI GCNGC 6 cut(s) 278, 322, 325, 490, 786, 993
BmcAI AGTACT 1 cut(s) 370
Bme1390I CCNGG 2 cut(s) 789, 806
Bme18I GGWCC 1 cut(s) 584
BmeT110I CYCGRG 1 cut(s) 1010
BmgT120I GGNCC 2 cut(s) 584, 677
BmiI GGNNCC 4 cut(s) 70, 248, 314, 657
BmrFI CCNGG 2 cut(s) 789, 806
BmsI GCATC 2 cut(s) 217, 583
BplI GAGNNNNNCTC 1 cut(s) 1082
BpmI CTGGAG 2 cut(s) 155, 756
Bpu10I CCTNAGC 1 cut(s) 995
BpuEI CTTGAG 3 cut(s) 323, 583, 693
BsaBI GATNNNNATC 1 cut(s) 983
BsaI GGTCTC 2 cut(s) 173, 814
BsaJI CCNNGG 2 cut(s) 19, 1040
BsaWI WCCGGW 4 cut(s) 524, 563, 617, 1067
BsaXI ACNNNNNCTCC 2 cut(s) 545, 575
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse1I ACTGG 2 cut(s) 89, 248
Bse8I GATNNNNATC 1 cut(s) 983
BseBI CCWGG 2 cut(s) 789, 806
BseDI CCNNGG 2 cut(s) 19, 1040
BseGI GGATG 1 cut(s) 984
BseJI GATNNNNATC 1 cut(s) 983
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 2 cut(s) 89, 248
BseRI GAGGAG 2 cut(s) 61, 1057
BseXI GCAGC 5 cut(s) 332, 335, 475, 796, 978
BshFI GGCC 5 cut(s) 18, 30, 38, 679, 1097
BsiHKAI GWGCWC 2 cut(s) 388, 555
BsiHKCI CYCGRG 1 cut(s) 1010
BsiSI CCGG 4 cut(s) 525, 564, 618, 1068
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 3 cut(s) 173, 814, 1067
BsnI GGCC 5 cut(s) 18, 30, 38, 679, 1097
Bso31I GGTCTC 2 cut(s) 173, 814
BsoBI CYCGRG 1 cut(s) 1010
Bsp1286I GDGCHC 2 cut(s) 388, 555
Bsp143I GATC 7 cut(s) 7, 266, 328, 454, 505, 904, 984
BspACI CCGC 2 cut(s) 24, 277
BspANI GGCC 5 cut(s) 18, 30, 38, 679, 1097
BspCNI CTCAG 1 cut(s) 86
BspLI GGNNCC 4 cut(s) 70, 248, 314, 657
BspPI GGATC 2 cut(s) 261, 912
BspTNI GGTCTC 2 cut(s) 173, 814
BsrI ACTGG 2 cut(s) 89, 248
BssECI CCNNGG 2 cut(s) 19, 1040
BssMI GATC 7 cut(s) 7, 266, 328, 454, 505, 904, 984
BssT1I CCWWGG 1 cut(s) 19
Bst2UI CCWGG 2 cut(s) 789, 806
Bst4CI ACNGT 7 cut(s) 53, 62, 184, 261, 557, 640, 1110
Bst6I CTCTTC 1 cut(s) 171
BstC8I GCNNGC 3 cut(s) 294, 298, 782
BstDEI CTNAG 4 cut(s) 73, 769, 900, 995
BstF5I GGATG 1 cut(s) 984
BstHHI GCGC 2 cut(s) 845, 1065
BstKTI GATC 7 cut(s) 10, 269, 331, 457, 508, 907, 987
BstMAI GTCTC 3 cut(s) 173, 814, 1067
BstMBI GATC 7 cut(s) 7, 266, 328, 454, 505, 904, 984
BstMWI GCNNNNNNNGC 2 cut(s) 419, 494
BstNI CCWGG 2 cut(s) 789, 806
BstSCI CCNGG 2 cut(s) 787, 804
BstV1I GCAGC 5 cut(s) 332, 335, 475, 796, 978
BstX2I RGATCY 2 cut(s) 266, 904
BstYI RGATCY 2 cut(s) 266, 904
BsuRI GGCC 5 cut(s) 18, 30, 38, 679, 1097
BtsCI GGATG 1 cut(s) 984
BtsI GCAGTG 1 cut(s) 1008
BtsIMutI CAGTG 2 cut(s) 388, 1008
Cac8I GCNNGC 3 cut(s) 294, 298, 782
CaiI CAGNNNCTG 1 cut(s) 326
CfoI GCGC 2 cut(s) 845, 1065
Cfr13I GGNCC 2 cut(s) 584, 677
Csp6I GTAC 4 cut(s) 369, 865, 1007, 1084
CviAII CATG 3 cut(s) 688, 697, 848
CviQI GTAC 4 cut(s) 369, 865, 1007, 1084
DdeI CTNAG 4 cut(s) 73, 769, 900, 995
DpnI GATC 7 cut(s) 9, 268, 330, 456, 507, 906, 986
DpnII GATC 7 cut(s) 7, 266, 328, 454, 505, 904, 984
DraIII CACNNNGTG 1 cut(s) 916
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
EciI GGCGGA 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 19
Eco31I GGTCTC 2 cut(s) 173, 814
Eco47I GGWCC 1 cut(s) 584
Eco57I CTGAAG 1 cut(s) 573
Eco88I CYCGRG 1 cut(s) 1010
EcoO109I RGGNCCY 1 cut(s) 584
EcoRII CCWGG 2 cut(s) 787, 804
EcoT14I CCWWGG 1 cut(s) 19
ErhI CCWWGG 1 cut(s) 19
FaeI CATG 3 cut(s) 691, 700, 851
FaiI YATR 8 cut(s) 357, 410, 453, 494, 689, 698, 849, 959
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FatI CATG 3 cut(s) 687, 696, 847
FbaI TGATCA 2 cut(s) 328, 505
Fnu4HI GCNGC 6 cut(s) 277, 321, 324, 489, 785, 992
FokI GGATG 1 cut(s) 991
Fsp4HI GCNGC 6 cut(s) 277, 321, 324, 489, 785, 992
FspBI CTAG 3 cut(s) 203, 366, 375
FspI TGCGCA 1 cut(s) 844
GlaI GCGC 2 cut(s) 844, 1064
GluI GCNGC 6 cut(s) 277, 321, 324, 489, 785, 992
GsuI CTGGAG 2 cut(s) 155, 756
HaeIII GGCC 5 cut(s) 18, 30, 38, 679, 1097
HapII CCGG 4 cut(s) 525, 564, 618, 1068
HhaI GCGC 2 cut(s) 845, 1065
Hin1II CATG 3 cut(s) 691, 700, 851
Hin6I GCGC 2 cut(s) 843, 1063
HinP1I GCGC 2 cut(s) 843, 1063
HinfI GANTC 7 cut(s) 106, 137, 467, 625, 851, 919, 1013
HpaII CCGG 4 cut(s) 525, 564, 618, 1068
HphI GGTGA 3 cut(s) 803, 902, 994
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 5 cut(s) 76, 111, 592, 630, 856
Hpy188III TCNNGA 6 cut(s) 134, 264, 542, 710, 735, 923
Hpy8I GTNNAC 1 cut(s) 86
Hpy99I CGWCG 2 cut(s) 261, 276
HpyAV CCTTC 2 cut(s) 441, 597
HpyCH4III ACNGT 7 cut(s) 53, 62, 184, 261, 557, 640, 1110
HpyCH4IV ACGT 2 cut(s) 234, 572
HpyCH4V TGCA 6 cut(s) 230, 292, 347, 607, 784, 961
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 494
HpyF3I CTNAG 4 cut(s) 73, 769, 900, 995
HpySE526I ACGT 2 cut(s) 234, 572
Hsp92II CATG 3 cut(s) 691, 700, 851
HspAI GCGC 2 cut(s) 843, 1063
Ksp22I TGATCA 2 cut(s) 328, 505
Kzo9I GATC 7 cut(s) 7, 266, 328, 454, 505, 904, 984
LmnI GCTCC 3 cut(s) 74, 391, 419
Lsp1109I GCAGC 5 cut(s) 332, 335, 475, 796, 978
LweI GCATC 2 cut(s) 217, 583
MaeI CTAG 3 cut(s) 203, 366, 375
MaeII ACGT 2 cut(s) 234, 572
MaeIII GTNAC 3 cut(s) 568, 892, 1014
MalI GATC 7 cut(s) 9, 268, 330, 456, 507, 906, 986
MboI GATC 7 cut(s) 7, 266, 328, 454, 505, 904, 984
MflI RGATCY 2 cut(s) 266, 904
MhlI GDGCHC 2 cut(s) 388, 555
MluCI AATT 5 cut(s) 129, 209, 348, 448, 857
MlyI GAGTC 3 cut(s) 146, 860, 1022
MmeI TCCRAC 2 cut(s) 202, 683
MseI TTAA 2 cut(s) 648, 966
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 4 cut(s) 525, 564, 618, 1068
MspR9I CCNGG 2 cut(s) 789, 806
MvaI CCWGG 2 cut(s) 789, 806
MwoI GCNNNNNNNGC 2 cut(s) 419, 494
NdeII GATC 7 cut(s) 7, 266, 328, 454, 505, 904, 984
NlaIII CATG 3 cut(s) 691, 700, 851
NlaIV GGNNCC 4 cut(s) 70, 248, 314, 657
NmeAIII GCCGAG 1 cut(s) 1065
NmuCI GTSAC 2 cut(s) 892, 1014
NsbI TGCGCA 1 cut(s) 844
PaeR7I CTCGAG 1 cut(s) 1010
PfeI GAWTC 4 cut(s) 106, 467, 625, 919
PkrI GCNGC 6 cut(s) 278, 322, 325, 490, 786, 993
PleI GAGTC 3 cut(s) 145, 859, 1021
PpsI GAGTC 3 cut(s) 145, 859, 1021
PpuMI RGGWCCY 1 cut(s) 584
PshBI ATTAAT 1 cut(s) 648
Psp5II RGGWCCY 1 cut(s) 584
Psp6I CCWGG 2 cut(s) 787, 804
PspGI CCWGG 2 cut(s) 787, 804
PspN4I GGNNCC 4 cut(s) 70, 248, 314, 657
PspPI GGNCC 2 cut(s) 584, 677
PspPPI RGGWCCY 1 cut(s) 584
PspXI VCTCGAGB 1 cut(s) 1010
PstNI CAGNNNCTG 1 cut(s) 326
PsuI RGATCY 2 cut(s) 266, 904
PvuII CAGCTG 1 cut(s) 326
RsaI GTAC 4 cut(s) 370, 866, 1008, 1085
RsaNI GTAC 4 cut(s) 369, 865, 1007, 1084
SaqAI TTAA 2 cut(s) 648, 966
SatI GCNGC 6 cut(s) 277, 321, 324, 489, 785, 992
Sau3AI GATC 7 cut(s) 7, 266, 328, 454, 505, 904, 984
Sau96I GGNCC 2 cut(s) 584, 677
ScaI AGTACT 1 cut(s) 370
SchI GAGTC 3 cut(s) 146, 860, 1022
ScrFI CCNGG 2 cut(s) 789, 806
SduI GDGCHC 2 cut(s) 388, 555
SfaNI GCATC 2 cut(s) 217, 583
Sfr274I CTCGAG 1 cut(s) 1010
SinI GGWCC 1 cut(s) 584
SlaI CTCGAG 1 cut(s) 1010
SmlI CTYRAG 4 cut(s) 302, 598, 708, 1010
SmoI CTYRAG 4 cut(s) 302, 598, 708, 1010
SpeI ACTAGT 1 cut(s) 374
Sse9I AATT 5 cut(s) 129, 209, 348, 448, 857
SsiI CCGC 2 cut(s) 24, 277
SspMI CTAG 3 cut(s) 203, 366, 375
StyD4I CCNGG 2 cut(s) 787, 804
StyI CCWWGG 1 cut(s) 19
TaaI ACNGT 7 cut(s) 53, 62, 184, 261, 557, 640, 1110
TaiI ACGT 2 cut(s) 237, 575
TaqI TCGA 2 cut(s) 434, 1011
TasI AATT 5 cut(s) 129, 209, 348, 448, 857
TatI WGTACW 2 cut(s) 368, 864
TauI GCSGC 1 cut(s) 279
TfiI GAWTC 4 cut(s) 106, 467, 625, 919
Tru1I TTAA 2 cut(s) 648, 966
Tru9I TTAA 2 cut(s) 648, 966
TscAI CASTG 2 cut(s) 388, 1008
TseFI GTSAC 2 cut(s) 892, 1014
TseI GCWGC 5 cut(s) 320, 323, 488, 784, 991
Tsp45I GTSAC 2 cut(s) 892, 1014
TspDTI ATGAA 5 cut(s) 465, 704, 716, 944, 953
TspRI CASTG 2 cut(s) 388, 1008
VpaK11BI GGWCC 1 cut(s) 584
VspI ATTAAT 1 cut(s) 648
XapI RAATTY 1 cut(s) 209
XhoI CTCGAG 1 cut(s) 1010
XspI CTAG 3 cut(s) 203, 366, 375
ZrmI AGTACT 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.