AT3G03710

polyribonucleotide nucleotidyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009860
Physical Location & Seq
Forward (+)
919362 .. 925372
6011 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G03710.1

Sequence Viewer

Length: 2769 bp
ATGTTGACGAGTCCCAGTAACGCACTTCACAGTAGTACTCCACAATTCTGGCCACTTCGCCGGAGCAAGCTTTGCCGTTCCCGGAATTTCCCTCGTTTTCACTCCGGCGAACGCAGCAGCGGCGGAGGAGGAAAATTGTGCTCGCTCTCTCTTCTCTCCGGAAGTGGCGCCGGTAAATTCAGTGTCAGAGCTCTAGTTAGGCCTGATGATACCGACGACGCTGACTCCGTCGGCGATGGGTCTCTGGCTTTTCCTAACCACGTTTCTGTCAAAATTCCATTCGGAAATAGAGAGATTTTAGTTGAGACTGGTCTCATGGGGAGACAAGCAAGTTCTGCAGTCACGGTCACAGATGGAGAAACTATTGTCTACACATCCGTTTGTCTAGCTGATGTTCCGAGTGAGCCATCAGATTTTCTTCCCCTTTATGTTCACTATCAGGAGCGATTCTCAGCTGTAGGTCGAACTAGTGGTGGATTTTTTAAGCGAGAAGGGAGAACCAAAGATCACGAGGTTCTGATTTGTAGGTTGATCGATAGACCTCTACGCCCCACTATGCCCAAAGGTTTCTACAATGAAACTCAGATTTTATCCTGGGTTTTGAGCTACGATGGATTACACGCACCTGATGCTTTAGCTGTTACATCTGCTGGAATTGCTGTAGCTCTTTCAGAAGTACCAAATGCGAAAGCGATTGCAGGAGTTCGGGTTGGTCTTATTGGGGGTGAATTCATTGTCAATCCAACCGTGAAGGAGATGGAAGAATCACAGCTAGATTTGTTTCTAGCTGGAACAGATACTGCAATTCTAACGATAGAGGGATACAGTAATTTTCTTCCTGAGGAAATGCTTCTCCAAGCTGTTAAAGTTGGACAGGATGCTGTACAGGCTACATGCATTGCTATTGAAGTTTTAGCAAAGAAATATGGAAAGCCTAAAATGCTTGACGCTATCAGATTACCACCTCCAGAGCTATACAAGCATGTGAAAGAACTTGCTGGTGAGGAATTGACAAAAGCGTTACAAATTAAGAGTAAAATATCGAGAAGGAAAGCCATATCGTCCCTGGAAGAAAAGGTCTTGACAATACTGACAGAGAAGGGATATGTTATTGATGAGGTAGCTTTTGGAACCATAGAAGCACAACCGGATCTGTTGGAGGATGAAGACGAGGATGAGGAAGTTGTTCCTGAAGGTGAGGTGGACCAAGGCGATGTTCACATTAGACCCATCCCTCGGAAACCTATTCCTTTACTATTTTCTGAAGTAGATGTCAAGCTAGTCTTCAAAGAAGTATCGTCGAAGCTTCTACGTAGGCGAATTGTTGAGGGAGGTAAAAGAAGTGATGGTCGGACTCTGGATGAGATTCGTCCAATTAATTCAAGATGTGGACTGCTTCCCAGGGCACATGGAAGTACTCTGTTCACACGTGGGGAAACACAGGCACTGGCAGTTGTTACGCTTGGTGATAAACAAATGGCGCAGAGAATTGACAACCTTGAGGGTTCTGATGAATACAAGAGGTTCTATCTTCAGTACACTTTTCCTCCATCGTCTGTTGGTGAAGTTGGACGAATTGGTGCACCCAGTAGAAGAGAAATAGGTCATGGGACACTAGCAGAGCGAGCATTGGAGACCATTCTACCTAGTGATGATGACTTTCCTTACACAATACGTGTTGAAAGTACAGTAATTGAAAGCAATGGTTCTTCAAGTATGGCATCTGTTTGTGGCGGTTGCTTGGCTTTGCAAGATGCTGGAGTTCCAGTCAAATGTTCTGTTGCTGGGATAGCAATGGGAATGGTTTGGGATACTGAAGAATTTGGAGGTGATGGATCTCCCCTTATCCTTTCTGACATCACTGGAGCTGAAGATGCATCTGGTGATATGGACTTTAAGGTTGCTGGGAATGAAGATGGCGTTACCGCCTTTCAGATGGACATCAAGGTAGGAGGAATTACTTTAGAGATAATGGAAAAGGCTCTAATACAGGCAAAAGCTGGGCGTCGCCATATTCTTGCTGAAATGGCAAAGTGCTCACCGCCTCCCACGCTAAGCCTCTCAAAATATGCTCCATTGATACTTATTATGAAGGTTCATCCAAGCAAAGTATACTCTCTTATTGGTTCTGGAGGTAAGAAAGTAAAGAGCATCATTGAAGAATCTGGAGTTGAGGCCATTGACATGCAAGATGATGGAACTGTCAAAATTATGGCAATTGATGTAGCGAGTCTAGAAAGGGCGAAAGCGATTATTAGTGGATTGACAATGGTTCCCTCTGTTGGTGATATCTACAGGAATTGTGAAATCAAGTCAATGGCTCCTTATGGTGCATTTGTAGAGATAGCGCCTGGGCGGGAAGGTCTTTGCCATATCAGTGAGCTGAGTGCTGAATGGCTTGCAAAACCAGAGGATGCCTATAAAGTAGGAGACCGCATTGACGTCAAATTAATAGAGGTAAATGAAAAGGGTCAGCTTCGACTTAGTGTACGGGCTTTACTTCCCGAATCAGAGACAGACAAAGACAGTCAGAAACAACAGCCGGCAGGTGATTCTACCAAAGACAAGAGTTCGCAAAGGAAATATGTAAATACTTCGTCAAAGGACCGTGCAGCTGCAGGAGCATCAAAGGTTTCATCTGGGGATGAACTTGTCCTGAAGAAGAAAGATGTAAGGAGAGCAACTGGTGGTAGTAGTGACAAGACAATGAATAGCAATAGCAGTACCAACGAAGAAAGTTTAGTCAACGGTGAAGCTACAATCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0004654 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006139 GO:0006396 GO:0006401 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008299 GO:0008408 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010322 GO:0010323 GO:0010467 GO:0010563 GO:0010565 GO:0010675 GO:0010677 GO:0015994 GO:0015995 GO:0016036 GO:0016070 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016119 GO:0016120 GO:0016122 GO:0016123 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0018130 GO:0019216 GO:0019220 GO:0019222 GO:0019438 GO:0019439 GO:0019747 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031425 GO:0031667 GO:0031668 GO:0031669 GO:0033013 GO:0033014 GO:0033554 GO:0034641 GO:0034655 GO:0042214 GO:0042440 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045827 GO:0045833 GO:0045912 GO:0045936 GO:0046148 GO:0046246 GO:0046483 GO:0046700 GO:0046890 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051174 GO:0051186 GO:0051188 GO:0051716 GO:0062012 GO:0062014 GO:0065007 GO:0071071 GO:0071072 GO:0071496 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1903725 GO:1903726
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko03018 map00230 map00240 map03018
Pfam Domains
Protein Families
KH_1 PNPase RNase_PH RNase_PH_C S1

Protein Analysis

922

Amino Acids

99.57

Weight (kDa)

5.4

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 97 - 227 9.1e-22 3' exoribonuclease family, domain 1
RNase_PH_C PF03725 232 - 293 9.2e-12 3' exoribonuclease family, domain 2
RNase_PH PF01138 455 - 589 8.1e-29 3' exoribonuclease family, domain 1
KH_1 PF00013 696 - 752 5.4e-07 KH domain
S1 PF00575 769 - 831 1.2e-12 S1 RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2537
AatII GACGTC 1 cut(s) 2445
Acc36I ACCTGC 1 cut(s) 2537
AccB1I GGYRCC 1 cut(s) 167
AccI GTMKAC 2 cut(s) 369, 2112
AccIII TCCGGA 1 cut(s) 158
AciI CCGC 7 cut(s) 120, 123, 1734, 1926, 2042, 2356, 2434
AclWI GGATC 2 cut(s) 1158, 1843
AcoI YGGCCR 1 cut(s) 50
AcsI RAATTY 5 cut(s) 85, 176, 273, 728, 1820
AcuI CTGAAG 6 cut(s) 1212, 1284, 1517, 1836, 1890, 2678
AcvI CACGTG 1 cut(s) 1430
AcyI GRCGYC 3 cut(s) 168, 2005, 2442
AfaI GTAC 8 cut(s) 37, 678, 885, 1417, 1538, 1687, 2490, 2725
AfiI CCNNNNNNNGG 2 cut(s) 1236, 2282
AflIII ACRYGT 2 cut(s) 1427, 1675
AgsI TTSAA 7 cut(s) 908, 1288, 1383, 1682, 1697, 1713, 2159
AhlI ACTAGT 1 cut(s) 467
AjnI CCWGG 4 cut(s) 593, 1065, 1400, 2350
AjuI GAANNNNNNNTTGG 2 cut(s) 1200, 1232
Alw21I GWGCWC 4 cut(s) 143, 193, 1585, 2039
Alw26I GTCTC 7 cut(s) 246, 299, 316, 317, 1628, 2424, 2507
Alw44I GTGCAC 1 cut(s) 1581
AlwI GGATC 2 cut(s) 1158, 1843
AlwNI CAGNNNCTG 2 cut(s) 800, 1447
Aor13HI TCCGGA 1 cut(s) 158
AoxI GGCC 3 cut(s) 50, 200, 2175
ApaLI GTGCAC 1 cut(s) 1581
ApeKI GCWGC 4 cut(s) 114, 117, 2612, 2615
ApoI RAATTY 5 cut(s) 85, 176, 273, 728, 1820
AseI ATTAAT 2 cut(s) 1377, 2450
Asp700I GAANNNNTTC 2 cut(s) 849, 1185
AspLEI GCGC 3 cut(s) 170, 1483, 2350
AspS9I GGNCC 2 cut(s) 1204, 2605
AsuC2I CCSGG 1 cut(s) 82
AvaII GGWCC 2 cut(s) 1204, 2605
AxyI CCTNAGG 1 cut(s) 840
BaeGI GKGCMC 2 cut(s) 1408, 1585
BalI TGGCCA 1 cut(s) 52
BanI GGYRCC 1 cut(s) 167
BanII GRGCYC 1 cut(s) 193
BauI CACGAG 1 cut(s) 509
BbrPI CACGTG 1 cut(s) 1430
BbsI GAAGAC 2 cut(s) 1173, 1276
Bbv12I GWGCWC 4 cut(s) 143, 193, 1585, 2039
BbvI GCAGC 4 cut(s) 126, 129, 2602, 2624
BceAI ACGGC 1 cut(s) 60
BciT130I CCWGG 4 cut(s) 595, 1067, 1402, 2352
BciVI GTATCC 2 cut(s) 815, 1804
BcnI CCSGG 1 cut(s) 82
BcoDI GTCTC 7 cut(s) 246, 299, 316, 317, 1628, 2424, 2507
BcuI ACTAGT 1 cut(s) 467
BfmI CTRYAG 5 cut(s) 336, 456, 660, 2293, 2616
BfoI RGCGCY 2 cut(s) 171, 2351
BfuAI ACCTGC 1 cut(s) 2537
BfuI GTATCC 2 cut(s) 815, 1804
BisI GCNGC 5 cut(s) 115, 118, 121, 2613, 2616
BlpI GCTNAGC 1 cut(s) 2054
BlsI GCNGC 5 cut(s) 116, 119, 122, 2614, 2617
BmcAI AGTACT 2 cut(s) 37, 1417
Bme1390I CCNGG 5 cut(s) 82, 595, 1067, 1402, 2352
Bme18I GGWCC 2 cut(s) 1204, 2605
BmgT120I GGNCC 2 cut(s) 1204, 2605
BmiI GGNNCC 4 cut(s) 169, 1132, 2274, 2322
BmrFI CCNGG 5 cut(s) 82, 595, 1067, 1402, 2352
BmrI ACTGGG 2 cut(s) 9, 1581
BmsI GCATC 9 cut(s) 619, 868, 1730, 1744, 1864, 1886, 2160, 2404, 2633
BmuI ACTGGG 2 cut(s) 9, 1581
BpiI GAAGAC 2 cut(s) 1173, 1276
BplI GAGNNNNNCTC 2 cut(s) 434, 466
BpmI CTGGAG 5 cut(s) 951, 1779, 1884, 2151, 2187
Bpu1102I GCTNAGC 1 cut(s) 2054
BpuEI CTTGAG 1 cut(s) 1520
BpuMI CCSGG 1 cut(s) 82
Bsa29I ATCGAT 1 cut(s) 534
BsaAI YACGTR 3 cut(s) 1313, 1430, 1676
BsaBI GATNNNNATC 1 cut(s) 1940
BsaHI GRCGYC 3 cut(s) 168, 2005, 2442
BsaI GGTCTC 4 cut(s) 246, 317, 1628, 2424
BsaJI CCNNGG 7 cut(s) 594, 1065, 1207, 1235, 1400, 1401, 2351
BsaWI WCCGGW 2 cut(s) 158, 1147
BsaXI ACNNNNNCTCC 8 cut(s) 209, 239, 693, 723, 1531, 1561, 1752, 1782
Bsc4I CCNNNNNNNGG 2 cut(s) 1236, 2282
Bse118I RCCGGY 2 cut(s) 170, 2542
Bse1I ACTGG 7 cut(s) 15, 313, 1452, 1587, 1766, 1867, 2689
Bse21I CCTNAGG 1 cut(s) 840
Bse3DI GCAATG 3 cut(s) 897, 1708, 1800
Bse8I GATNNNNATC 1 cut(s) 1940
BseAI TCCGGA 1 cut(s) 158
BseBI CCWGG 4 cut(s) 595, 1067, 1402, 2352
BseCI ATCGAT 1 cut(s) 534
BseDI CCNNGG 7 cut(s) 594, 1065, 1207, 1235, 1400, 1401, 2351
BseGI GGATG 9 cut(s) 374, 883, 1168, 1180, 1230, 1366, 2098, 2419, 2650
BseJI GATNNNNATC 1 cut(s) 1940
BseLI CCNNNNNNNGG 2 cut(s) 1236, 2282
BseMI GCAATG 3 cut(s) 897, 1708, 1800
BseMII CTCAG 4 cut(s) 465, 596, 831, 2375
BseNI ACTGG 7 cut(s) 15, 313, 1452, 1587, 1766, 1867, 2689
BseRI GAGGAG 1 cut(s) 141
BseSI GKGCMC 2 cut(s) 1408, 1585
BseXI GCAGC 4 cut(s) 126, 129, 2602, 2624
BseYI CCCAGC 3 cut(s) 1784, 1904, 2000
BsgI GTGCAG 1 cut(s) 2631
BshFI GGCC 3 cut(s) 52, 202, 2177
BshNI GGYRCC 1 cut(s) 167
BshVI ATCGAT 1 cut(s) 534
BsiHKAI GWGCWC 4 cut(s) 143, 193, 1585, 2039
BsiSI CCGG 7 cut(s) 61, 82, 105, 159, 171, 1148, 2543
BslFI GGGAC 2 cut(s) 1048, 1624
BslI CCNNNNNNNGG 2 cut(s) 1236, 2282
BsmAI GTCTC 7 cut(s) 246, 299, 316, 317, 1628, 2424, 2507
BsmFI GGGAC 2 cut(s) 1048, 1624
BsnI GGCC 3 cut(s) 52, 202, 2177
Bso31I GGTCTC 4 cut(s) 246, 317, 1628, 2424
Bsp1286I GDGCHC 5 cut(s) 143, 193, 1408, 1585, 2039
Bsp13I TCCGGA 1 cut(s) 158
Bsp1407I TGTACA 1 cut(s) 883
Bsp143I GATC 4 cut(s) 505, 531, 1150, 1835
Bsp1720I GCTNAGC 1 cut(s) 2054
BspACI CCGC 7 cut(s) 120, 123, 1734, 1926, 2042, 2356, 2434
BspANI GGCC 3 cut(s) 52, 202, 2177
BspCNI CTCAG 4 cut(s) 464, 595, 832, 2376
BspDI ATCGAT 1 cut(s) 534
BspEI TCCGGA 1 cut(s) 158
BspLI GGNNCC 4 cut(s) 169, 1132, 2274, 2322
BspMAI CTGCAG 2 cut(s) 340, 2620
BspMI ACCTGC 1 cut(s) 2537
BspPI GGATC 2 cut(s) 1158, 1843
BspT107I GGYRCC 1 cut(s) 167
BspTNI GGTCTC 4 cut(s) 246, 317, 1628, 2424
BsrDI GCAATG 3 cut(s) 897, 1708, 1800
BsrFI RCCGGY 2 cut(s) 170, 2542
BsrGI TGTACA 1 cut(s) 883
BsrI ACTGG 7 cut(s) 15, 313, 1452, 1587, 1766, 1867, 2689
BssAI RCCGGY 2 cut(s) 170, 2542
BssECI CCNNGG 7 cut(s) 594, 1065, 1207, 1235, 1400, 1401, 2351
BssMI GATC 4 cut(s) 505, 531, 1150, 1835
BssNAI GTATAC 1 cut(s) 2113
BssNI GRCGYC 3 cut(s) 168, 2005, 2442
BssSI CACGAG 1 cut(s) 509
BssT1I CCWWGG 1 cut(s) 1207
Bst1107I GTATAC 1 cut(s) 2113
Bst2BI CACGAG 1 cut(s) 509
Bst2UI CCWGG 4 cut(s) 595, 1067, 1402, 2352
Bst4CI ACNGT 9 cut(s) 32, 346, 748, 827, 1690, 2203, 2528, 2609, 2750
Bst6I CTCTTC 2 cut(s) 156, 1588
BstACI GRCGYC 3 cut(s) 168, 2005, 2442
BstAPI GCANNNNNTGC 3 cut(s) 72, 335, 629
BstAUI TGTACA 1 cut(s) 883
BstBAI YACGTR 3 cut(s) 1313, 1430, 1676
BstC8I GCNNGC 5 cut(s) 68, 143, 1626, 2400, 2544
BstDEI CTNAG 6 cut(s) 451, 582, 840, 2054, 2384, 2483
BstF5I GGATG 9 cut(s) 374, 883, 1168, 1180, 1230, 1366, 2098, 2419, 2650
BstH2I RGCGCY 2 cut(s) 171, 2351
BstHHI GCGC 3 cut(s) 170, 1483, 2350
BstKTI GATC 4 cut(s) 508, 534, 1153, 1838
BstMAI GTCTC 7 cut(s) 246, 299, 316, 317, 1628, 2424, 2507
BstMBI GATC 4 cut(s) 505, 531, 1150, 1835
BstNI CCWGG 4 cut(s) 595, 1067, 1402, 2352
BstNSI RCATGY 3 cut(s) 897, 986, 2188
BstSCI CCNGG 5 cut(s) 80, 593, 1065, 1400, 2350
BstSFI CTRYAG 5 cut(s) 336, 456, 660, 2293, 2616
BstSLI GKGCMC 2 cut(s) 1408, 1585
BstSNI TACGTA 1 cut(s) 1313
BstV1I GCAGC 4 cut(s) 126, 129, 2602, 2624
BstV2I GAAGAC 2 cut(s) 1173, 1276
BstX2I RGATCY 2 cut(s) 1150, 1835
BstXI CCANNNNNNTGG 1 cut(s) 48
BstYI RGATCY 2 cut(s) 1150, 1835
BstZ17I GTATAC 1 cut(s) 2113
Bsu15I ATCGAT 1 cut(s) 534
Bsu36I CCTNAGG 1 cut(s) 840
BsuI GTATCC 2 cut(s) 815, 1804
BsuRI GGCC 3 cut(s) 52, 202, 2177
BsuTUI ATCGAT 1 cut(s) 534
BtgZI GCGATG 2 cut(s) 249, 1227
BtsCI GGATG 9 cut(s) 374, 883, 1168, 1180, 1230, 1366, 2098, 2419, 2650
BtsIMutI CAGTG 4 cut(s) 187, 1445, 1860, 2383
BveI ACCTGC 1 cut(s) 2537
Cac8I GCNNGC 5 cut(s) 68, 143, 1626, 2400, 2544
CaiI CAGNNNCTG 2 cut(s) 800, 1447
CfoI GCGC 3 cut(s) 170, 1483, 2350
Cfr10I RCCGGY 2 cut(s) 170, 2542
Cfr13I GGNCC 2 cut(s) 1204, 2605
ClaI ATCGAT 1 cut(s) 534
CseI GACGC 3 cut(s) 227, 956, 1994
Csp6I GTAC 8 cut(s) 36, 677, 884, 1416, 1537, 1686, 2489, 2724
CviAII CATG 6 cut(s) 316, 894, 983, 1409, 1607, 2185
CviQI GTAC 8 cut(s) 36, 677, 884, 1416, 1537, 1686, 2489, 2724
DdeI CTNAG 6 cut(s) 451, 582, 840, 2054, 2384, 2483
DinI GGCGCC 1 cut(s) 169
DpnI GATC 4 cut(s) 507, 533, 1152, 1837
DpnII GATC 4 cut(s) 505, 531, 1150, 1835
EaeI YGGCCR 1 cut(s) 50
Eam1104I CTCTTC 2 cut(s) 156, 1588
EarI CTCTTC 2 cut(s) 156, 1588
EciI GGCGGA 1 cut(s) 138
Ecl136II GAGCTC 1 cut(s) 191
Eco105I TACGTA 1 cut(s) 1313
Eco130I CCWWGG 1 cut(s) 1207
Eco147I AGGCCT 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 193
Eco31I GGTCTC 4 cut(s) 246, 317, 1628, 2424
Eco32I GATATC 1 cut(s) 2290
Eco47I GGWCC 2 cut(s) 1204, 2605
Eco53kI GAGCTC 1 cut(s) 191
Eco57I CTGAAG 6 cut(s) 1212, 1284, 1517, 1836, 1890, 2678
Eco72I CACGTG 1 cut(s) 1430
Eco81I CCTNAGG 1 cut(s) 840
EcoICRI GAGCTC 1 cut(s) 191
EcoRI GAATTC 1 cut(s) 728
EcoRII CCWGG 4 cut(s) 593, 1065, 1400, 2350
EcoRV GATATC 1 cut(s) 2290
EcoT14I CCWWGG 1 cut(s) 1207
EcoT22I ATGCAT 2 cut(s) 899, 1879
EcoT38I GRGCYC 1 cut(s) 193
EgeI GGCGCC 1 cut(s) 169
EheI GGCGCC 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 1207
FaeI CATG 6 cut(s) 319, 897, 986, 1412, 1610, 2188
FalI AAGNNNNNCTT 2 cut(s) 1268, 1300
FaqI GGGAC 2 cut(s) 1048, 1624
FatI CATG 6 cut(s) 315, 893, 982, 1408, 1606, 2184
FauI CCCGC 1 cut(s) 2349
FblI GTMKAC 2 cut(s) 369, 2112
Fnu4HI GCNGC 5 cut(s) 115, 118, 121, 2613, 2616
FokI GGATG 9 cut(s) 361, 890, 1175, 1187, 1217, 1373, 2085, 2426, 2657
FriOI GRGCYC 1 cut(s) 193
Fsp4HI GCNGC 5 cut(s) 115, 118, 121, 2613, 2616
GlaI GCGC 3 cut(s) 169, 1482, 2349
GluI GCNGC 5 cut(s) 115, 118, 121, 2613, 2616
GsaI CCCAGC 3 cut(s) 1788, 1908, 2004
GsuI CTGGAG 5 cut(s) 951, 1779, 1884, 2151, 2187
HaeII RGCGCY 2 cut(s) 171, 2351
HaeIII GGCC 3 cut(s) 52, 202, 2177
HapII CCGG 7 cut(s) 61, 82, 105, 159, 171, 1148, 2543
HgaI GACGC 3 cut(s) 227, 956, 1994
HhaI GCGC 3 cut(s) 170, 1483, 2350
Hin1I GRCGYC 3 cut(s) 168, 2005, 2442
Hin1II CATG 6 cut(s) 319, 897, 986, 1412, 1610, 2188
Hin6I GCGC 3 cut(s) 168, 1481, 2348
HinP1I GCGC 3 cut(s) 168, 1481, 2348
HincII GTYRAC 2 cut(s) 6, 2746
HindII GTYRAC 2 cut(s) 6, 2746
HindIII AAGCTT 2 cut(s) 68, 1304
HpaII CCGG 7 cut(s) 61, 82, 105, 159, 171, 1148, 2543
Hpy99I CGWCG 5 cut(s) 218, 221, 233, 1303, 2010
HpyAV CCTTC 7 cut(s) 485, 745, 1041, 1093, 1187, 2086, 2354
HpyCH4III ACNGT 9 cut(s) 32, 346, 748, 827, 1690, 2203, 2528, 2609, 2750
HpyCH4IV ACGT 5 cut(s) 261, 1312, 1429, 1675, 2442
HpyF3I CTNAG 6 cut(s) 451, 582, 840, 2054, 2384, 2483
HpySE526I ACGT 5 cut(s) 261, 1312, 1429, 1675, 2442
Hsp92I GRCGYC 3 cut(s) 168, 2005, 2442
Hsp92II CATG 6 cut(s) 319, 897, 986, 1412, 1610, 2188
HspAI GCGC 3 cut(s) 168, 1481, 2348
KasI GGCGCC 1 cut(s) 167
Kpn2I TCCGGA 1 cut(s) 158
KroI GCCGGC 1 cut(s) 2542
KroNI GCCGGC 1 cut(s) 2544
Kzo9I GATC 4 cut(s) 505, 531, 1150, 1835
LmnI GCTCC 6 cut(s) 63, 442, 1865, 2077, 2326, 2621
Lsp1109I GCAGC 4 cut(s) 126, 129, 2602, 2624
LweI GCATC 9 cut(s) 619, 868, 1730, 1744, 1864, 1886, 2160, 2404, 2633
MaeII ACGT 5 cut(s) 261, 1312, 1429, 1675, 2442
MaeIII GTNAC 8 cut(s) 17, 340, 346, 640, 1020, 1456, 1921, 2696
MalI GATC 4 cut(s) 507, 533, 1152, 1837
MboI GATC 4 cut(s) 505, 531, 1150, 1835
MfeI CAATTG 1 cut(s) 2217
MflI RGATCY 2 cut(s) 1150, 1835
MhlI GDGCHC 5 cut(s) 143, 193, 1408, 1585, 2039
MlsI TGGCCA 1 cut(s) 52
MluNI TGGCCA 1 cut(s) 52
Mly113I GGCGCC 1 cut(s) 168
MlyI GAGTC 4 cut(s) 19, 218, 1348, 2239
MmeI TCCRAC 5 cut(s) 767, 850, 1137, 1331, 1549
Mox20I TGGCCA 1 cut(s) 52
Mph1103I ATGCAT 2 cut(s) 899, 1879
MroI TCCGGA 1 cut(s) 158
MroNI GCCGGC 1 cut(s) 2542
MroXI GAANNNNTTC 2 cut(s) 849, 1185
MscI TGGCCA 1 cut(s) 52
MseI TTAA 6 cut(s) 483, 864, 1029, 1377, 1896, 2450
MslI CAYNNNNRTG 2 cut(s) 2183, 2376
Msp20I TGGCCA 1 cut(s) 52
MspA1I CMGCKG 3 cut(s) 120, 455, 2615
MspI CCGG 7 cut(s) 61, 82, 105, 159, 171, 1148, 2543
MspR9I CCNGG 5 cut(s) 82, 595, 1067, 1402, 2352
MunI CAATTG 1 cut(s) 2217
MvaI CCWGG 4 cut(s) 595, 1067, 1402, 2352
NaeI GCCGGC 1 cut(s) 2544
NarI GGCGCC 1 cut(s) 168
NciI CCSGG 1 cut(s) 82
NdeII GATC 4 cut(s) 505, 531, 1150, 1835
NgoMIV GCCGGC 1 cut(s) 2542
NlaIII CATG 6 cut(s) 319, 897, 986, 1412, 1610, 2188
NlaIV GGNNCC 4 cut(s) 169, 1132, 2274, 2322
NmuCI GTSAC 3 cut(s) 340, 346, 2696
NsiI ATGCAT 2 cut(s) 899, 1879
NspI RCATGY 3 cut(s) 897, 986, 2188
PaqCI CACCTGC 1 cut(s) 2537
PasI CCCWGGG 1 cut(s) 1401
PceI AGGCCT 1 cut(s) 202
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PdiI GCCGGC 1 cut(s) 2544
PdmI GAANNNNTTC 2 cut(s) 849, 1185
PfeI GAWTC 6 cut(s) 447, 764, 1366, 2162, 2507, 2552
PflFI GACNNNGTC 1 cut(s) 227
PfoI TCCNGGA 1 cut(s) 80
PkrI GCNGC 5 cut(s) 116, 119, 122, 2614, 2617
PleI GAGTC 4 cut(s) 18, 218, 1348, 2238
PluTI GGCGCC 1 cut(s) 171
PmaCI CACGTG 1 cut(s) 1430
PmlI CACGTG 1 cut(s) 1430
PpsI GAGTC 4 cut(s) 18, 218, 1348, 2238
Ppu21I YACGTR 3 cut(s) 1313, 1430, 1676
PshBI ATTAAT 2 cut(s) 1377, 2450
Psp124BI GAGCTC 1 cut(s) 193
Psp6I CCWGG 4 cut(s) 593, 1065, 1400, 2350
PspCI CACGTG 1 cut(s) 1430
PspFI CCCAGC 3 cut(s) 1784, 1904, 2000
PspGI CCWGG 4 cut(s) 593, 1065, 1400, 2350
PspN4I GGNNCC 4 cut(s) 169, 1132, 2274, 2322
PspPI GGNCC 2 cut(s) 1204, 2605
PstI CTGCAG 2 cut(s) 340, 2620
PstNI CAGNNNCTG 2 cut(s) 800, 1447
PsuI RGATCY 2 cut(s) 1150, 1835
PsyI GACNNNGTC 1 cut(s) 227
PvuII CAGCTG 2 cut(s) 455, 2615
RsaI GTAC 8 cut(s) 37, 678, 885, 1417, 1538, 1687, 2490, 2725
RsaNI GTAC 8 cut(s) 36, 677, 884, 1416, 1537, 1686, 2489, 2724
RseI CAYNNNNRTG 2 cut(s) 2183, 2376
SacI GAGCTC 1 cut(s) 193
SaqAI TTAA 6 cut(s) 483, 864, 1029, 1377, 1896, 2450
SatI GCNGC 5 cut(s) 115, 118, 121, 2613, 2616
Sau3AI GATC 4 cut(s) 505, 531, 1150, 1835
Sau96I GGNCC 2 cut(s) 1204, 2605
ScaI AGTACT 2 cut(s) 37, 1417
SchI GAGTC 4 cut(s) 19, 218, 1348, 2239
ScrFI CCNGG 5 cut(s) 82, 595, 1067, 1402, 2352
SduI GDGCHC 5 cut(s) 143, 193, 1408, 1585, 2039
SfaNI GCATC 9 cut(s) 619, 868, 1730, 1744, 1864, 1886, 2160, 2404, 2633
SfcI CTRYAG 5 cut(s) 336, 456, 660, 2293, 2616
SfoI GGCGCC 1 cut(s) 169
SinI GGWCC 2 cut(s) 1204, 2605
SmiMI CAYNNNNRTG 2 cut(s) 2183, 2376
SmlI CTYRAG 1 cut(s) 1499
SmoI CTYRAG 1 cut(s) 1499
SnaBI TACGTA 1 cut(s) 1313
SpeI ACTAGT 1 cut(s) 467
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 7 cut(s) 120, 123, 1734, 1926, 2042, 2356, 2434
SspDI GGCGCC 1 cut(s) 167
SstI GAGCTC 1 cut(s) 193
StuI AGGCCT 1 cut(s) 202
StyD4I CCNGG 5 cut(s) 80, 593, 1065, 1400, 2350
StyI CCWWGG 1 cut(s) 1207
TaaI ACNGT 9 cut(s) 32, 346, 748, 827, 1690, 2203, 2528, 2609, 2750
TaiI ACGT 5 cut(s) 264, 1315, 1432, 1678, 2445
TaqI TCGA 5 cut(s) 463, 534, 1043, 1301, 2479
TatI WGTACW 5 cut(s) 35, 883, 1415, 1536, 1685
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 6 cut(s) 447, 764, 1366, 2162, 2507, 2552
Tru1I TTAA 6 cut(s) 483, 864, 1029, 1377, 1896, 2450
Tru9I TTAA 6 cut(s) 483, 864, 1029, 1377, 1896, 2450
TscAI CASTG 4 cut(s) 187, 1452, 1867, 2383
TseFI GTSAC 3 cut(s) 340, 346, 2696
TseI GCWGC 4 cut(s) 114, 117, 2612, 2615
Tsp45I GTSAC 3 cut(s) 340, 346, 2696
TspGWI ACGGA 2 cut(s) 217, 367
TspRI CASTG 4 cut(s) 187, 1452, 1867, 2383
Tth111I GACNNNGTC 1 cut(s) 227
VneI GTGCAC 1 cut(s) 1581
VpaK11BI GGWCC 2 cut(s) 1204, 2605
VspI ATTAAT 2 cut(s) 1377, 2450
XapI RAATTY 5 cut(s) 85, 176, 273, 728, 1820
XbaI TCTAGA 1 cut(s) 2233
XceI RCATGY 3 cut(s) 897, 986, 2188
XcmI CCANNNNNNNNNTGG 1 cut(s) 1063
XmiI GTMKAC 2 cut(s) 369, 2112
XmnI GAANNNNTTC 2 cut(s) 849, 1185
ZraI GACGTC 1 cut(s) 2443
ZrmI AGTACT 2 cut(s) 37, 1417
Zsp2I ATGCAT 2 cut(s) 899, 1879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.