Rmu_sc0009681.1_g000007

polyribonucleotide nucleotidyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009681.1
OG0009860
Physical Location & Seq
Forward (+)
24092 .. 25045
954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009681.1_g000007.1.cds

Sequence Viewer

Length: 438 bp
atgttggcaaaccctagcagtggcaggctacactgcgctaaaccctttcatttccacccaaacccaaaatcaaacgagcccaaatgttttgtgttccgaaactggcccccgcgcagcaagtccaagtccaagttctgcagtttgtccctcctcgtacccagaaagaatcgcaaggcctttggcatcagggctttgaccgacgccgccggagctgcggcggttgatgtcactcagccctattccgtcaaaatccccgttggtgatagacacattttgattgagacaggtcatattgggagacaagccagtgcttctgttacagtcacagatggagaaactattgtttacacatctgtgtgtttggctgatactccaagtgaaccgtcagactttttccctctttccgttcattatcaggagcgtttttcggcagcaggt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0004654 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006139 GO:0006396 GO:0006401 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008299 GO:0008408 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010322 GO:0010323 GO:0010467 GO:0010563 GO:0010565 GO:0010675 GO:0010677 GO:0015994 GO:0015995 GO:0016036 GO:0016070 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016119 GO:0016120 GO:0016122 GO:0016123 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0018130 GO:0019216 GO:0019220 GO:0019222 GO:0019438 GO:0019439 GO:0019747 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031425 GO:0031667 GO:0031668 GO:0031669 GO:0033013 GO:0033014 GO:0033554 GO:0034641 GO:0034655 GO:0042214 GO:0042440 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045827 GO:0045833 GO:0045912 GO:0045936 GO:0046148 GO:0046246 GO:0046483 GO:0046700 GO:0046890 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051174 GO:0051186 GO:0051188 GO:0051716 GO:0062012 GO:0062014 GO:0065007 GO:0071071 GO:0071072 GO:0071496 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1903725 GO:1903726
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko03018 map00230 map00240 map03018
Pfam Domains
Protein Families
KH_1 PNPase RNase_PH RNase_PH_C S1

Protein Analysis

146

Amino Acids

15.94

Weight (kDa)

9.51

Isoelectric Point (pI)

34.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 425
AccII CGCG 1 cut(s) 112
AciI CCGC 4 cut(s) 110, 204, 215, 218
AcyI GRCGYC 1 cut(s) 201
AfaI GTAC 1 cut(s) 156
AfiI CCNNNNNNNGG 1 cut(s) 20
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AleI CACNNNNGTG 1 cut(s) 353
AluBI AGCT 1 cut(s) 212
AluI AGCT 1 cut(s) 212
Alw26I GTCTC 2 cut(s) 275, 292
AoxI GGCC 2 cut(s) 104, 174
ApeKI GCWGC 3 cut(s) 114, 212, 431
AspLEI GCGC 2 cut(s) 38, 114
AspS9I GGNCC 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 272
BanII GRGCYC 1 cut(s) 81
BbvI GCAGC 2 cut(s) 126, 199
BccI CCATC 1 cut(s) 323
BcoDI GTCTC 2 cut(s) 275, 292
BfaI CTAG 1 cut(s) 15
BfmI CTRYAG 1 cut(s) 136
BfuAI ACCTGC 1 cut(s) 425
BisI GCNGC 5 cut(s) 115, 204, 213, 216, 432
BlsI GCNGC 5 cut(s) 116, 205, 214, 217, 433
BmgT120I GGNCC 1 cut(s) 105
BmiI GGNNCC 1 cut(s) 107
BmsI GCATC 1 cut(s) 192
BsaHI GRCGYC 1 cut(s) 201
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse1I ACTGG 2 cut(s) 107, 306
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMII CTCAG 1 cut(s) 245
BseNI ACTGG 2 cut(s) 107, 306
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 2 cut(s) 126, 199
Bsh1236I CGCG 1 cut(s) 112
BshFI GGCC 2 cut(s) 106, 176
BsiSI CCGG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 130
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 2 cut(s) 275, 292
BsmFI GGGAC 1 cut(s) 130
BsnI GGCC 2 cut(s) 106, 176
Bsp1286I GDGCHC 1 cut(s) 81
BspACI CCGC 4 cut(s) 110, 204, 215, 218
BspANI GGCC 2 cut(s) 106, 176
BspCNI CTCAG 1 cut(s) 244
BspFNI CGCG 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 107
BspMAI CTGCAG 1 cut(s) 140
BspMI ACCTGC 1 cut(s) 425
BsrI ACTGG 2 cut(s) 107, 306
BssNI GRCGYC 1 cut(s) 201
Bst4CI ACNGT 2 cut(s) 322, 384
BstACI GRCGYC 1 cut(s) 201
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 231
BstFNI CGCG 1 cut(s) 112
BstHHI GCGC 2 cut(s) 38, 114
BstMAI GTCTC 2 cut(s) 275, 292
BstMWI GCNNNNNNNGC 2 cut(s) 209, 212
BstSFI CTRYAG 1 cut(s) 136
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 2 cut(s) 126, 199
BsuRI GGCC 2 cut(s) 106, 176
BtsI GCAGTG 2 cut(s) 25, 31
BtsIMutI CAGTG 3 cut(s) 25, 31, 313
BveI ACCTGC 1 cut(s) 425
Cac8I GCNNGC 1 cut(s) 26
CfoI GCGC 2 cut(s) 38, 114
Cfr13I GGNCC 1 cut(s) 105
CseI GACGC 1 cut(s) 209
Csp6I GTAC 1 cut(s) 155
CviJI RGCY 9 cut(s) 28, 79, 106, 176, 191, 212, 235, 305, 365
CviKI_1 RGCY 9 cut(s) 28, 79, 106, 176, 191, 212, 235, 305, 365
CviQI GTAC 1 cut(s) 155
DdeI CTNAG 1 cut(s) 231
Eco147I AGGCCT 1 cut(s) 176
Eco24I GRGCYC 1 cut(s) 81
EcoT38I GRGCYC 1 cut(s) 81
FaiI YATR 1 cut(s) 291
FaqI GGGAC 1 cut(s) 130
FauI CCCGC 1 cut(s) 117
Fnu4HI GCNGC 5 cut(s) 115, 204, 213, 216, 432
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 5 cut(s) 115, 204, 213, 216, 432
FspBI CTAG 1 cut(s) 15
GlaI GCGC 2 cut(s) 37, 113
GluI GCNGC 5 cut(s) 115, 204, 213, 216, 432
HaeIII GGCC 2 cut(s) 106, 176
HapII CCGG 1 cut(s) 207
HgaI GACGC 1 cut(s) 209
HhaI GCGC 2 cut(s) 38, 114
Hin1I GRCGYC 1 cut(s) 201
Hin6I GCGC 2 cut(s) 36, 112
HinP1I GCGC 2 cut(s) 36, 112
HinfI GANTC 1 cut(s) 166
HpaII CCGG 1 cut(s) 207
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 2 cut(s) 346, 380
Hpy188I TCNGA 2 cut(s) 98, 388
Hpy188III TCNNGA 1 cut(s) 416
Hpy8I GTNNAC 2 cut(s) 346, 380
Hpy99I CGWCG 1 cut(s) 203
HpyCH4III ACNGT 2 cut(s) 322, 384
HpyCH4V TGCA 1 cut(s) 138
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 212
HpyF3I CTNAG 1 cut(s) 231
Hsp92I GRCGYC 1 cut(s) 201
HspAI GCGC 2 cut(s) 36, 112
LmnI GCTCC 2 cut(s) 209, 418
LpnPI CCDG 9 cut(s) 10, 88, 172, 172, 220, 270, 319, 401, 420
Lsp1109I GCAGC 2 cut(s) 126, 199
LweI GCATC 1 cut(s) 192
MaeI CTAG 1 cut(s) 15
MaeIII GTNAC 3 cut(s) 226, 316, 322
MhlI GDGCHC 1 cut(s) 81
MnlI CCTC 3 cut(s) 158, 161, 408
MslI CAYNNNNRTG 2 cut(s) 353, 355
MspI CCGG 1 cut(s) 207
MvnI CGCG 1 cut(s) 112
MwoI GCNNNNNNNGC 2 cut(s) 209, 212
NlaIV GGNNCC 1 cut(s) 107
NmuCI GTSAC 2 cut(s) 226, 322
OliI CACNNNNGTG 1 cut(s) 353
PceI AGGCCT 1 cut(s) 176
PfeI GAWTC 1 cut(s) 166
PkrI GCNGC 5 cut(s) 116, 205, 214, 217, 433
PspN4I GGNNCC 1 cut(s) 107
PspPI GGNCC 1 cut(s) 105
PstI CTGCAG 1 cut(s) 140
RsaI GTAC 1 cut(s) 156
RsaNI GTAC 1 cut(s) 155
RseI CAYNNNNRTG 2 cut(s) 353, 355
SatI GCNGC 5 cut(s) 115, 204, 213, 216, 432
Sau96I GGNCC 1 cut(s) 105
SduI GDGCHC 1 cut(s) 81
SetI ASST 2 cut(s) 214, 289
SfaNI GCATC 1 cut(s) 192
SfcI CTRYAG 1 cut(s) 136
SmiMI CAYNNNNRTG 2 cut(s) 353, 355
SseBI AGGCCT 1 cut(s) 176
SsiI CCGC 4 cut(s) 110, 204, 215, 218
SspMI CTAG 1 cut(s) 15
StuI AGGCCT 1 cut(s) 176
TaaI ACNGT 2 cut(s) 322, 384
TaqII GACCGA 1 cut(s) 212
TauI GCSGC 2 cut(s) 206, 218
TfiI GAWTC 1 cut(s) 166
TscAI CASTG 3 cut(s) 25, 38, 313
TseFI GTSAC 2 cut(s) 226, 322
TseI GCWGC 3 cut(s) 114, 212, 431
Tsp45I GTSAC 2 cut(s) 226, 322
TspDTI ATGAA 2 cut(s) 38, 398
TspGWI ACGGA 2 cut(s) 232, 394
TspRI CASTG 3 cut(s) 25, 38, 313
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.