Rh3DG362800

polyribonucleotide nucleotidyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0009860
Physical Location & Seq
Reverse (-)
45030175 .. 45057409
27235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG362800.1

Sequence Viewer

Length: 2769 bp
ATGTTGGCAAGCCCTAGCAGTGGCAGGCTGCACTGCGCTAAACCTTTTCATTTCCACCCAAACCCAAAATCAAATGAGCCCAAATGTTTTGTGTTCCGAAACTGGCCCCCGCGCAGCAAGTCCAAGTCCAAGTTCTGCAGTTTGTCCCTCCTCGTACCCAGAAAGAATCGCAAGGCCTTTGGCATCAGGGCTTTGACCGACGCCGCCGGAGCTGCGGCGGTTGATGTTACTCAGCCCTATTCCGTCAAAATCCCCGTTGGTGATAGACACATTTTGATTGAGACAGGTCATATTGGGAGACAAGCCAGTGCTTCTGTTACAGTCACAGATGGAGAAACTATTGTTTACACATCTGTGTGTTTGGCTGATACTCCAAGTGAACCGTCAGACTTTTTCCCTCTTTCTGTTCATTATCAGGAGCGTTTTTCGGCAGCAGGTCGGACTAGTGGAGGCTTTTTCAAACGAGAAGGAAGGGCAAAAGATCACGAGGTTCTCATTTGCAGATTGATTGATAGGCCTTTGCGTCCAACTATGTTGAATGGCTTCTACCATGAAACTCAGATACTTTCTTGGGTGCTGAGTTATGACGGTTTGCACTCTCCTGATTCTTTGGCAGTCACAGCAGCTGGAATAGCTGTTGCTCTTTCAGAGGTTCCAAACACAAAAACTATAGCAGGAGTTAGAATTGGTCTTGTTGGTGGCAAATTTATTGTGAATCCAACAACTAAGGAGATGGAAGACTCTGAGTTGGACTTGCTGCTAGCTGGCACAGATAGTGCAATATTGATGATAGAGGGTTATTGTGATTTTCTGCCCGAGGAAAAGTTGCTGCAAGCAATAGAAGTTGGGCAGGATGCTGTACGAGCAATTTGCAATGAGGTGGAGGCTTTGGTTAAGAAGTGTGGGAAGCCAAAAATGTTTGATGCAATTAAATTACCTCCCCCTGAGCTATATAATCATGTTGAGGAAATTGCTGGTGATGAGTTGGTAAGAGCTCTGCAGATTACGCACAAGATTCCTAGAAGAAAAGCCCTGTTGTCATTGGAGGGAGAAGTTTTAACTATACTTACTGAAAAGGGATATGTTAGTAAGGATACAGCTCTTGCAGGCAGTGAAACAGTACCAGATATATTTGAAGATGAAGATGAGGATGAGGAAGTGATTGTGGATGGTGAAGTAGATGAAGGTGATGTTCACATAAAGCCTACCTCACGGAAATCGACTCCCTTGTTTTTTTCTGAGGTAGACGTGAAGCTGGTATTCAAAGAAGTAACATCCAAATTTTTGCGCAGGCGCATTGTGGAGGGTGGAAGAAGAAGTGATGGGCGGACCCCAGAAGGGATACGTCCAATTAACTCAAGATGTGGACTACTTCCAAGGGCACATGGAAGTGCTCTTTTCACACGAGGGGAAACACAGTCATTGGCTGTGGTTACACTCGGTGATAAGCAGATGGCTCAGAGGATAGACAATCTAGTGGGTGTCGATGAATGGAAAAGATTCTATCTCCAGTACACATTTCCCCCTTCATGTGTTGGGGAAGTTGGACGGAATGGAGCACCTAGTAGAAGAGAAATTGGTCATGGAATGCTGGCTGAGAGAGCTCTTGAACCAATATTGCCTTGTGATGATGATTTTCCTTACACTATACGTGTTGAGAGCACAATTACTGAAAGCAATGGCTCTTCAAGTATGGCATCTGTGTGTGGGGGATGCTTAGCACTACAGGATGCTGGAGTTCCAATCAAGTGCTCTATAGTTGGAATAGCAATGGGTCTGGTTCTAGATACCGAGGAATTTGGGGGGGATGGTTCTCCGCTTATTCTCTCTGACATAACTGGATCTGAAGATGCATCAGGGGATATGGATTTCAAGGTTGCTGGAAATGAACATGGTGTAACAGCTTTTCAGATGGATATAAAGGTGAGCGGGATTACTTTATCAGTTATGAGAAAGGCACTCCTACAAGCAAAAGATGGCCGGAAGCATATTATTGCGGAACTGTTGAAATGCTCCCCTCCACCTTCAGGAAGGCTTTCCAAGTATGCACCACTGATTCACATAATGAAGGTCAAACCTGAGAAGGTAAACTTAATCATTGGTTCTGGTGGGAAGAAGGTCAAAAGTATTATAGAAGAGACCGGAGTAGATGCAATTGACACACAAGAGGATGGGATAGTGAAAATTACTGCCAGGGATTTATCGAGTTTAGAAAAGTCTAAAGCTATTATTGCTAATTTGACAATGGTTCCAACTGTTGGTGATATCTACAGGAATTGCGAAATTAAAACAATAGCTCCATATGGAGTTTTTGTGGAAATAGCACCTGGCCGAGAGGGACTTTGCCATATTAGTGAGTTAAGTTCAGATTGGCTGGCAAAGGCAGAAGATGCTTTTAAGGTGGGAGATCATGTTGATGTTAAACTTATTGAGGTAAATGAGAAGGGACAACTTCGCCTTAGCCGCCGAGCATTACTTCCAGATGCAGATCCTGAGAATGCCGGTGTAAGGCAGCCTACAGGTGACTCCAAAGATGTACCTTCTCAAACATCGGACAAAAACAAAGTCAAAGATACAAGCTCACCTAAAAATAATTCATCAGAAAGTACTCTGCTCTCACAAAAAAAGTTCATCCGGAGATCAGTCAGCCCTGCCAAAAATAGACAAAATAGTAATAATGATGCGACAAAGAAGAGCAGCAGTAGAGTAGTGGGTAGTTCCAGCAAGGATGAAAATACCTTAGTAAATGGAGGTGCCAACATTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0004654 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006139 GO:0006396 GO:0006401 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008299 GO:0008408 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010322 GO:0010323 GO:0010467 GO:0010563 GO:0010565 GO:0010675 GO:0010677 GO:0015994 GO:0015995 GO:0016036 GO:0016070 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016119 GO:0016120 GO:0016122 GO:0016123 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0018130 GO:0019216 GO:0019220 GO:0019222 GO:0019438 GO:0019439 GO:0019747 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031425 GO:0031667 GO:0031668 GO:0031669 GO:0033013 GO:0033014 GO:0033554 GO:0034641 GO:0034655 GO:0042214 GO:0042440 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045827 GO:0045833 GO:0045912 GO:0045936 GO:0046148 GO:0046246 GO:0046483 GO:0046700 GO:0046890 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051174 GO:0051186 GO:0051188 GO:0051716 GO:0062012 GO:0062014 GO:0065007 GO:0071071 GO:0071072 GO:0071496 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1903725 GO:1903726
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko03018 map00230 map00240 map03018
Pfam Domains
Protein Families
KH_1 PNPase RNase_PH RNase_PH_C S1

Protein Analysis

922

Amino Acids

100.04

Weight (kDa)

6.24

Isoelectric Point (pI)

44.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 89 - 219 3.5e-24 3' exoribonuclease family, domain 1
RNase_PH_C PF03725 224 - 285 5.2e-14 3' exoribonuclease family, domain 2
RNase_PH PF01138 448 - 581 1.4e-28 3' exoribonuclease family, domain 1
KH_1 PF00013 688 - 744 6.2e-06 KH domain
S1 PF00575 761 - 823 2e-11 S1 RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1289
Acc36I ACCTGC 1 cut(s) 425
AccB1I GGYRCC 1 cut(s) 2753
AccB7I CCANNNNNTGG 1 cut(s) 2258
AccBSI CCGCTC 1 cut(s) 1929
AccI GTMKAC 1 cut(s) 1245
AccII CGCG 1 cut(s) 112
AccIII TCCGGA 1 cut(s) 2634
AciI CCGC 9 cut(s) 110, 204, 215, 218, 1327, 1817, 1929, 1997, 2464
AclWI GGATC 2 cut(s) 1849, 2483
AcoI YGGCCR 2 cut(s) 1978, 2329
AcsI RAATTY 3 cut(s) 704, 1280, 1796
AcuI CTGAAG 2 cut(s) 1866, 2010
AcyI GRCGYC 1 cut(s) 201
AdeI CACNNNGTG 1 cut(s) 1442
AfaI GTAC 6 cut(s) 156, 861, 1122, 1514, 2538, 2608
AfiI CCNNNNNNNGG 5 cut(s) 20, 1338, 2027, 2258, 2508
AflIII ACRYGT 1 cut(s) 1651
AgsI TTSAA 8 cut(s) 460, 538, 1136, 1264, 1610, 1689, 1873, 2008
AhlI ACTAGT 1 cut(s) 443
AjiI CACGTC 1 cut(s) 1249
AjnI CCWGG 2 cut(s) 2192, 2326
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AleI CACNNNNGTG 1 cut(s) 353
Alw21I GWGCWC 6 cut(s) 997, 1396, 1561, 1606, 1664, 1754
Alw26I GTCTC 3 cut(s) 275, 292, 2132
AlwI GGATC 2 cut(s) 1849, 2483
AlwNI CAGNNNCTG 2 cut(s) 626, 2492
Ama87I CYCGRG 1 cut(s) 815
Aor13HI TCCGGA 1 cut(s) 2634
AoxI GGCC 5 cut(s) 104, 174, 515, 1978, 2329
ApeKI GCWGC 9 cut(s) 28, 114, 212, 431, 623, 757, 829, 2512, 2697
ApoI RAATTY 3 cut(s) 704, 1280, 1796
ArsI GACNNNNNNTTYG 2 cut(s) 2550, 2582
Asp700I GAANNNNTTC 3 cut(s) 542, 1499, 2035
AspLEI GCGC 4 cut(s) 38, 114, 1290, 1296
AspS9I GGNCC 2 cut(s) 105, 1329
AsuHPI GGTGA 9 cut(s) 272, 989, 1184, 1199, 1454, 1936, 2273, 2534, 2574
AsuNHI GCTAGC 1 cut(s) 760
AvaI CYCGRG 1 cut(s) 815
AvaII GGWCC 1 cut(s) 1329
BaeGI GKGCMC 1 cut(s) 1384
BanI GGYRCC 1 cut(s) 2753
BanII GRGCYC 3 cut(s) 81, 997, 1606
BauI CACGAG 2 cut(s) 485, 1404
BbsI GAAGAC 1 cut(s) 744
Bbv12I GWGCWC 6 cut(s) 997, 1396, 1561, 1606, 1664, 1754
BbvI GCAGC 9 cut(s) 15, 126, 199, 443, 635, 744, 816, 2524, 2709
BccI CCATC 9 cut(s) 323, 727, 1163, 1316, 1447, 1802, 1906, 1970, 2165
BcgI CGANNNNNNTGC 2 cut(s) 852, 886
BciT130I CCWGG 2 cut(s) 2194, 2328
BciVI GTATCC 2 cut(s) 1087, 1335
BcoDI GTCTC 3 cut(s) 275, 292, 2132
BcuI ACTAGT 1 cut(s) 443
BfaI CTAG 7 cut(s) 15, 444, 761, 1020, 1475, 1563, 1784
BfmI CTRYAG 7 cut(s) 136, 669, 998, 1724, 1755, 2269, 2517
BfuAI ACCTGC 1 cut(s) 425
BfuI GTATCC 2 cut(s) 1087, 1335
BlpI GCTNAGC 1 cut(s) 1717
BmcAI AGTACT 1 cut(s) 2608
Bme1390I CCNGG 2 cut(s) 2194, 2328
Bme18I GGWCC 1 cut(s) 1329
BmeT110I CYCGRG 1 cut(s) 815
BmgBI CACGTC 1 cut(s) 1249
BmgT120I GGNCC 2 cut(s) 105, 1329
BmiI GGNNCC 5 cut(s) 107, 654, 1331, 2250, 2755
BmrFI CCNGG 2 cut(s) 2194, 2328
BmtI GCTAGC 1 cut(s) 764
BpiI GAAGAC 1 cut(s) 744
BpmI CTGGAG 2 cut(s) 1493, 1755
Bpu10I CCTNAGC 2 cut(s) 945, 2459
Bpu1102I GCTNAGC 1 cut(s) 1717
BpuEI CTTGAG 1 cut(s) 1342
BsaAI YACGTR 1 cut(s) 1652
BsaBI GATNNNNATC 1 cut(s) 2487
BsaHI GRCGYC 1 cut(s) 201
BsaI GGTCTC 1 cut(s) 2132
BsaJI CCNNGG 4 cut(s) 816, 1376, 1791, 2193
BsaWI WCCGGW 2 cut(s) 2141, 2634
BsaXI ACNNNNNCTCC 6 cut(s) 2281, 2298, 2311, 2328, 2397, 2427
Bsc4I CCNNNNNNNGG 5 cut(s) 20, 1338, 2027, 2258, 2508
Bse118I RCCGGY 1 cut(s) 2501
Bse1I ACTGG 4 cut(s) 107, 306, 1510, 1843
Bse3DI GCAATG 3 cut(s) 880, 1684, 1776
Bse8I GATNNNNATC 1 cut(s) 2487
BseAI TCCGGA 1 cut(s) 2634
BseBI CCWGG 2 cut(s) 2194, 2328
BseDI CCNNGG 4 cut(s) 816, 1376, 1791, 2193
BseJI GATNNNNATC 1 cut(s) 2487
BseLI CCNNNNNNNGG 5 cut(s) 20, 1338, 2027, 2258, 2508
BseMI GCAATG 3 cut(s) 880, 1684, 1776
BseNI ACTGG 4 cut(s) 107, 306, 1510, 1843
BseRI GAGGAG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 1384
BseXI GCAGC 9 cut(s) 15, 126, 199, 443, 635, 744, 816, 2524, 2709
BsgI GTGCAG 1 cut(s) 14
Bsh1236I CGCG 1 cut(s) 112
BshFI GGCC 5 cut(s) 106, 176, 517, 1980, 2331
BshNI GGYRCC 1 cut(s) 2753
BsiHKAI GWGCWC 6 cut(s) 997, 1396, 1561, 1606, 1664, 1754
BsiHKCI CYCGRG 1 cut(s) 815
BsiSI CCGG 5 cut(s) 207, 1981, 2142, 2502, 2635
BslFI GGGAC 3 cut(s) 130, 2352, 2460
BslI CCNNNNNNNGG 5 cut(s) 20, 1338, 2027, 2258, 2508
BsmAI GTCTC 3 cut(s) 275, 292, 2132
BsmFI GGGAC 3 cut(s) 130, 2352, 2460
BsmI GAATGC 2 cut(s) 1593, 2503
BsnI GGCC 5 cut(s) 106, 176, 517, 1980, 2331
Bso31I GGTCTC 1 cut(s) 2132
BsoBI CYCGRG 1 cut(s) 815
Bsp1286I GDGCHC 8 cut(s) 81, 997, 1384, 1396, 1561, 1606, 1664, 1754
Bsp13I TCCGGA 1 cut(s) 2634
Bsp143I GATC 5 cut(s) 481, 1841, 2407, 2488, 2639
Bsp1720I GCTNAGC 1 cut(s) 1717
BspACI CCGC 9 cut(s) 110, 204, 215, 218, 1327, 1817, 1929, 1997, 2464
BspANI GGCC 5 cut(s) 106, 176, 517, 1980, 2331
BspEI TCCGGA 1 cut(s) 2634
BspFNI CGCG 1 cut(s) 112
BspLI GGNNCC 5 cut(s) 107, 654, 1331, 2250, 2755
BspMAI CTGCAG 2 cut(s) 140, 1002
BspMI ACCTGC 1 cut(s) 425
BspOI GCTAGC 1 cut(s) 764
BspPI GGATC 2 cut(s) 1849, 2483
BspQI GCTCTTC 2 cut(s) 1690, 2687
BspT107I GGYRCC 1 cut(s) 2753
BspTNI GGTCTC 1 cut(s) 2132
BsrBI CCGCTC 1 cut(s) 1929
BsrDI GCAATG 3 cut(s) 880, 1684, 1776
BsrFI RCCGGY 1 cut(s) 2501
BsrI ACTGG 4 cut(s) 107, 306, 1510, 1843
BssAI RCCGGY 1 cut(s) 2501
BssECI CCNNGG 4 cut(s) 816, 1376, 1791, 2193
BssMI GATC 5 cut(s) 481, 1841, 2407, 2488, 2639
BssNI GRCGYC 1 cut(s) 201
BssSI CACGAG 2 cut(s) 485, 1404
BssT1I CCWWGG 1 cut(s) 1376
Bst2BI CACGAG 2 cut(s) 485, 1404
Bst2UI CCWGG 2 cut(s) 2194, 2328
Bst4CI ACNGT 7 cut(s) 322, 384, 590, 1120, 1419, 2004, 2257
Bst6I CTCTTC 4 cut(s) 1564, 1690, 2130, 2687
BstACI GRCGYC 1 cut(s) 201
BstAPI GCANNNNNTGC 1 cut(s) 2390
BstBAI YACGTR 1 cut(s) 1652
BstC8I GCNNGC 9 cut(s) 10, 26, 762, 766, 834, 1108, 1292, 1593, 2376
BstFNI CGCG 1 cut(s) 112
BstHHI GCGC 4 cut(s) 38, 114, 1290, 1296
BstKTI GATC 5 cut(s) 484, 1844, 2410, 2491, 2642
BstMAI GTCTC 3 cut(s) 275, 292, 2132
BstMBI GATC 5 cut(s) 481, 1841, 2407, 2488, 2639
BstNI CCWGG 2 cut(s) 2194, 2328
BstSCI CCNGG 2 cut(s) 2192, 2326
BstSFI CTRYAG 7 cut(s) 136, 669, 998, 1724, 1755, 2269, 2517
BstSLI GKGCMC 1 cut(s) 1384
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 9 cut(s) 15, 126, 199, 443, 635, 744, 816, 2524, 2709
BstV2I GAAGAC 1 cut(s) 744
BstX2I RGATCY 2 cut(s) 1841, 2488
BstYI RGATCY 2 cut(s) 1841, 2488
BsuI GTATCC 2 cut(s) 1087, 1335
BsuRI GGCC 5 cut(s) 106, 176, 517, 1980, 2331
BtrI CACGTC 1 cut(s) 1249
BtsI GCAGTG 3 cut(s) 25, 31, 1117
BtsIMutI CAGTG 5 cut(s) 25, 31, 313, 1117, 2051
BveI ACCTGC 1 cut(s) 425
Cac8I GCNNGC 9 cut(s) 10, 26, 762, 766, 834, 1108, 1292, 1593, 2376
CaiI CAGNNNCTG 2 cut(s) 626, 2492
CfoI GCGC 4 cut(s) 38, 114, 1290, 1296
Cfr10I RCCGGY 1 cut(s) 2501
Cfr13I GGNCC 2 cut(s) 105, 1329
CseI GACGC 2 cut(s) 209, 512
Csp6I GTAC 6 cut(s) 155, 860, 1121, 1513, 2537, 2607
CviAII CATG 7 cut(s) 551, 959, 1385, 1530, 1583, 1892, 2411
CviQI GTAC 6 cut(s) 155, 860, 1121, 1513, 2537, 2607
DpnI GATC 5 cut(s) 483, 1843, 2409, 2490, 2641
DpnII GATC 5 cut(s) 481, 1841, 2407, 2488, 2639
DraIII CACNNNGTG 1 cut(s) 1442
EaeI YGGCCR 2 cut(s) 1978, 2329
Eam1104I CTCTTC 4 cut(s) 1564, 1690, 2130, 2687
EarI CTCTTC 4 cut(s) 1564, 1690, 2130, 2687
EciI GGCGGA 1 cut(s) 1342
Ecl136II GAGCTC 2 cut(s) 995, 1604
Eco130I CCWWGG 1 cut(s) 1376
Eco147I AGGCCT 2 cut(s) 176, 517
Eco24I GRGCYC 3 cut(s) 81, 997, 1606
Eco31I GGTCTC 1 cut(s) 2132
Eco32I GATATC 1 cut(s) 2266
Eco47I GGWCC 1 cut(s) 1329
Eco53kI GAGCTC 2 cut(s) 995, 1604
Eco57I CTGAAG 2 cut(s) 1866, 2010
Eco88I CYCGRG 1 cut(s) 815
EcoICRI GAGCTC 2 cut(s) 995, 1604
EcoRII CCWGG 2 cut(s) 2192, 2326
EcoRV GATATC 1 cut(s) 2266
EcoT14I CCWWGG 1 cut(s) 1376
EcoT22I ATGCAT 1 cut(s) 1855
EcoT38I GRGCYC 3 cut(s) 81, 997, 1606
ErhI CCWWGG 1 cut(s) 1376
FaeI CATG 7 cut(s) 554, 962, 1388, 1533, 1586, 1895, 2414
FalI AAGNNNNNCTT 2 cut(s) 2075, 2107
FaqI GGGAC 3 cut(s) 130, 2352, 2460
FatI CATG 7 cut(s) 550, 958, 1384, 1529, 1582, 1891, 2410
FauI CCCGC 2 cut(s) 117, 1922
FauNDI CATATG 1 cut(s) 2302
FblI GTMKAC 1 cut(s) 1245
FriOI GRGCYC 3 cut(s) 81, 997, 1606
FspBI CTAG 7 cut(s) 15, 444, 761, 1020, 1475, 1563, 1784
FspI TGCGCA 1 cut(s) 1289
GlaI GCGC 4 cut(s) 37, 113, 1289, 1295
GsuI CTGGAG 2 cut(s) 1493, 1755
HaeIII GGCC 5 cut(s) 106, 176, 517, 1980, 2331
HapII CCGG 5 cut(s) 207, 1981, 2142, 2502, 2635
HgaI GACGC 2 cut(s) 209, 512
HhaI GCGC 4 cut(s) 38, 114, 1290, 1296
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 7 cut(s) 554, 962, 1388, 1533, 1586, 1895, 2414
Hin6I GCGC 4 cut(s) 36, 112, 1288, 1294
HinP1I GCGC 4 cut(s) 36, 112, 1288, 1294
HinfI GANTC 9 cut(s) 166, 605, 715, 740, 1015, 1222, 1500, 2056, 2525
HpaII CCGG 5 cut(s) 207, 1981, 2142, 2502, 2635
HphI GGTGA 9 cut(s) 272, 989, 1184, 1199, 1454, 1936, 2273, 2534, 2574
Hpy166II GTNNAC 7 cut(s) 346, 380, 1195, 1246, 1367, 1515, 2089
Hpy8I GTNNAC 7 cut(s) 346, 380, 1195, 1246, 1367, 1515, 2089
Hpy99I CGWCG 1 cut(s) 203
HpyCH4III ACNGT 7 cut(s) 322, 384, 590, 1120, 1419, 2004, 2257
HpyCH4IV ACGT 3 cut(s) 1248, 1345, 1651
HpySE526I ACGT 3 cut(s) 1248, 1345, 1651
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 7 cut(s) 554, 962, 1388, 1533, 1586, 1895, 2414
HspAI GCGC 4 cut(s) 36, 112, 1288, 1294
Kpn2I TCCGGA 1 cut(s) 2634
Kzo9I GATC 5 cut(s) 481, 1841, 2407, 2488, 2639
LguI GCTCTTC 2 cut(s) 1690, 2687
LmnI GCTCC 5 cut(s) 209, 418, 1556, 2018, 2302
Lsp1109I GCAGC 9 cut(s) 15, 126, 199, 443, 635, 744, 816, 2524, 2709
MaeI CTAG 7 cut(s) 15, 444, 761, 1020, 1475, 1563, 1784
MaeII ACGT 3 cut(s) 1248, 1345, 1651
MaeIII GTNAC 8 cut(s) 226, 316, 322, 616, 1270, 1432, 1897, 2522
MalI GATC 5 cut(s) 483, 1843, 2409, 2490, 2641
MbiI CCGCTC 1 cut(s) 1929
MboI GATC 5 cut(s) 481, 1841, 2407, 2488, 2639
MfeI CAATTG 1 cut(s) 2154
MflI RGATCY 2 cut(s) 1841, 2488
MhlI GDGCHC 8 cut(s) 81, 997, 1384, 1396, 1561, 1606, 1664, 1754
MlyI GAGTC 3 cut(s) 734, 1216, 2519
MmeI TCCRAC 7 cut(s) 419, 551, 729, 743, 1525, 1741, 2276
Mph1103I ATGCAT 1 cut(s) 1855
MroI TCCGGA 1 cut(s) 2634
MroXI GAANNNNTTC 3 cut(s) 542, 1499, 2035
MseI TTAA 9 cut(s) 894, 930, 1058, 1353, 2093, 2286, 2360, 2397, 2421
MslI CAYNNNNRTG 6 cut(s) 353, 355, 1389, 1702, 2352, 2415
MspA1I CMGCKG 1 cut(s) 626
MspI CCGG 5 cut(s) 207, 1981, 2142, 2502, 2635
MspR9I CCNGG 2 cut(s) 2194, 2328
MunI CAATTG 1 cut(s) 2154
Mva1269I GAATGC 2 cut(s) 1593, 2503
MvaI CCWGG 2 cut(s) 2194, 2328
MvnI CGCG 1 cut(s) 112
NdeI CATATG 1 cut(s) 2302
NdeII GATC 5 cut(s) 481, 1841, 2407, 2488, 2639
NheI GCTAGC 1 cut(s) 760
NlaIII CATG 7 cut(s) 554, 962, 1388, 1533, 1586, 1895, 2414
NlaIV GGNNCC 5 cut(s) 107, 654, 1331, 2250, 2755
NmeAIII GCCGAG 2 cut(s) 2357, 2492
NmuCI GTSAC 3 cut(s) 322, 616, 2522
NsbI TGCGCA 1 cut(s) 1289
NsiI ATGCAT 1 cut(s) 1855
OliI CACNNNNGTG 1 cut(s) 353
PceI AGGCCT 2 cut(s) 176, 517
PciSI GCTCTTC 2 cut(s) 1690, 2687
PctI GAATGC 2 cut(s) 1593, 2503
PdmI GAANNNNTTC 3 cut(s) 542, 1499, 2035
PfeI GAWTC 6 cut(s) 166, 605, 715, 1015, 1500, 2056
PflMI CCANNNNNTGG 1 cut(s) 2258
PleI GAGTC 3 cut(s) 734, 1216, 2519
PpsI GAGTC 3 cut(s) 734, 1216, 2519
Ppu21I YACGTR 1 cut(s) 1652
Psp124BI GAGCTC 2 cut(s) 997, 1606
Psp6I CCWGG 2 cut(s) 2192, 2326
PspGI CCWGG 2 cut(s) 2192, 2326
PspN4I GGNNCC 5 cut(s) 107, 654, 1331, 2250, 2755
PspPI GGNCC 2 cut(s) 105, 1329
PstI CTGCAG 2 cut(s) 140, 1002
PstNI CAGNNNCTG 2 cut(s) 626, 2492
PsuI RGATCY 2 cut(s) 1841, 2488
PvuII CAGCTG 1 cut(s) 626
RsaI GTAC 6 cut(s) 156, 861, 1122, 1514, 2538, 2608
RsaNI GTAC 6 cut(s) 155, 860, 1121, 1513, 2537, 2607
RseI CAYNNNNRTG 6 cut(s) 353, 355, 1389, 1702, 2352, 2415
SacI GAGCTC 2 cut(s) 997, 1606
SapI GCTCTTC 2 cut(s) 1690, 2687
SaqAI TTAA 9 cut(s) 894, 930, 1058, 1353, 2093, 2286, 2360, 2397, 2421
Sau3AI GATC 5 cut(s) 481, 1841, 2407, 2488, 2639
Sau96I GGNCC 2 cut(s) 105, 1329
ScaI AGTACT 1 cut(s) 2608
SchI GAGTC 3 cut(s) 734, 1216, 2519
ScrFI CCNGG 2 cut(s) 2194, 2328
SduI GDGCHC 8 cut(s) 81, 997, 1384, 1396, 1561, 1606, 1664, 1754
SfcI CTRYAG 7 cut(s) 136, 669, 998, 1724, 1755, 2269, 2517
SinI GGWCC 1 cut(s) 1329
SmiMI CAYNNNNRTG 6 cut(s) 353, 355, 1389, 1702, 2352, 2415
SmlI CTYRAG 1 cut(s) 1357
SmoI CTYRAG 1 cut(s) 1357
SpeI ACTAGT 1 cut(s) 443
SseBI AGGCCT 2 cut(s) 176, 517
SsiI CCGC 9 cut(s) 110, 204, 215, 218, 1327, 1817, 1929, 1997, 2464
SspI AATATT 2 cut(s) 783, 1617
SspMI CTAG 7 cut(s) 15, 444, 761, 1020, 1475, 1563, 1784
SstI GAGCTC 2 cut(s) 997, 1606
StuI AGGCCT 2 cut(s) 176, 517
StyD4I CCNGG 2 cut(s) 2192, 2326
StyI CCWWGG 1 cut(s) 1376
TaaI ACNGT 7 cut(s) 322, 384, 590, 1120, 1419, 2004, 2257
TaiI ACGT 3 cut(s) 1251, 1348, 1654
TaqI TCGA 3 cut(s) 1220, 1485, 2204
TaqII GACCGA 1 cut(s) 212
TatI WGTACW 2 cut(s) 1512, 2606
TauI GCSGC 3 cut(s) 206, 218, 2466
TfiI GAWTC 6 cut(s) 166, 605, 715, 1015, 1500, 2056
Tru1I TTAA 9 cut(s) 894, 930, 1058, 1353, 2093, 2286, 2360, 2397, 2421
Tru9I TTAA 9 cut(s) 894, 930, 1058, 1353, 2093, 2286, 2360, 2397, 2421
TscAI CASTG 5 cut(s) 25, 38, 313, 1117, 2058
TseFI GTSAC 3 cut(s) 322, 616, 2522
TseI GCWGC 9 cut(s) 28, 114, 212, 431, 623, 757, 829, 2512, 2697
Tsp45I GTSAC 3 cut(s) 322, 616, 2522
TspGWI ACGGA 3 cut(s) 232, 1228, 1564
TspRI CASTG 5 cut(s) 25, 38, 313, 1117, 2058
Van91I CCANNNNNTGG 1 cut(s) 2258
VpaK11BI GGWCC 1 cut(s) 1329
XapI RAATTY 3 cut(s) 704, 1280, 1796
XbaI TCTAGA 1 cut(s) 1783
XmiI GTMKAC 1 cut(s) 1245
XmnI GAANNNNTTC 3 cut(s) 542, 1499, 2035
XspI CTAG 7 cut(s) 15, 444, 761, 1020, 1475, 1563, 1784
ZrmI AGTACT 1 cut(s) 2608
Zsp2I ATGCAT 1 cut(s) 1855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.