RchiOBHm_Chr3g0496111

polyribonucleotide nucleotidyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0009860
Physical Location & Seq
Reverse (-)
46670867 .. 46697399
26533 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45845

Sequence Viewer

Length: 2763 bp
ATGTTGGCAAACCCTAGCAGTGGCAGACTGCACTGCGCCAAACCCTTTCATTTCCACCCAAAATCAAACGAGCCCAAATGTTTTGTGTTCCGAAACTGGCCCCCGCGCAGCAAGTCCAAGTCCAAGTTCTGCAGTTTGTCCCTCCTCGTTCCCAGAAAGAATCGCAAGGCCTTTGGCATCAGGGCTTTGACCGACGCCACCGGAGCTGCGGCGGTTGATGTTACTCAGCCCTATTCCGTCAAAATCCCCGTTGGCGATAGACACATTTTGATTGAGACAGGTCATATTGGGAGACAAGCCAGTGCTTCTGTTACAGTCACAGATGGAGAAACTATTGTTTACACATCTGTTTGTTTGGCTGATACTCCAAGTGAACCGTCAGACTTTTTCCCTCTTTCCGTTCATTATCAGGAGCGTTTTTCGGCTGCAGGTCGGACTAGTGGAGGATTTTTTAAACGAGAAGGAAGGGCAAAAGATCACGAGGTTCTCATTTGCAGATTGATTGATAGGCCTTTGCGTCCAACTATGTTGAATGGCTTCTACCATGAAACTCAGATACTTTCTTGGGTGCTGAGTTATGATGGTTTGCACTCTCCTGATTCTTTGGCAGTCACAGCTGCTGGAATAGCTGTTGCTCTTTCAGAGGTTCCAAACACAAAAACTATAGCAGGAGTTAGAATTGGTCTTGTTGGTGACAGATTTATTGTGAATCCAACAACTAAGGAGATGGAAGACTCTGAGTTGGACTTGCTGCTAGCTGGCACAGATAGTGCAATATTGATGATAGAGGGTTATTGTGATTTTCTGCCCGAGGAAAAGTTGCTGCAAGCAATAGAAGTTGGGCAGGATGCTGTACGAGCAATTTGCAATGAGGTGGAGGCTTTGGTTAAGAAGTGTGGGAAGCCAAAAATGTTTGATGCAATTAAATTACCTCCCCCTGAGCTATATAATCATGTTGAGGAAATTGCTGGTGATGAGTTGGTAAGAGCTCTGCAGATTACACACAAGATTCCTAGAAGAAAAGCCCTGTTGTCATTGGAAGGAGAAGTTTTAACTATACTTACTGAAAAGGGATATGTTAGTAAGGATACAGCTCTTGCAGGCAGTGAAACAGTACCAGATATATTTGAAGATGAAGATGAGGATGAGGAAGTGATTGTGGATGGTGAAGTAGATGAAGGTGATGTTCATATAAAACCTACCTCACGGAAATCGACTCCCTTGTTTTTTTCTGAGGTAGACGTGAAGCTGGTATTCAAAGAAGTAACATCCAAATTTTTGCGCAGGCGCATTGTGGAGGGTGGAAGAAGAAGTGATGGGCGGACCCCAGAAGGGATACGTCCAATTAACTCAAGATGTGGACTACTTCCAAGGGCACATGGAAGTGCTCTTTTCACACGAGGGGAAACACAGTCATTGGCTGTGGTTACACTTGGTGATAAGCAGATGGCTCAGAGGATAGACAACCTAGTGGGTGTAGATGAATGGAAAAGATTCTATCTCCAGTACACATTTCCCCCTTCATGTGTTGGGGAGGTTGGACGGAATGGAGCACCTAGTAGAAGAGAAATTGGTCATGGAATGCTGGCTGAGAGAGCTCTTGAACCAATATTGCCTTGTGATGATGATTTTCCTTACACTGTACGTGTTGAGAGCACAATTACTGAAAGCAATGGCTCTTCAAGTATGGCGTCTGTGTGTGGGGGATGCTTAGCACTACAGGATGCTGGAGTTCCAATCAAGTGCTCTATAGTTGGAATAGCAATGGGTCTGGTTCTAGATACCCAGGAATTTGGGGGGGATGGTTCTCCGCTTATTCTCTCTGACATAACTGGATCTGAAGATGCATCAGGGGATATGGATTTCAAGGTTGCTGGAAATGAACATGGTGTAACAGCATTTCAGATGGATATAAAGGTGAGCGGGATTACATTATCAGTTATGAGAAAGGCACTCCTACAAGCAAAAGATGGCCGGAAGCATATTATTGCGGAACTGTTGAAATGCTCCCCTCCACCTTCAGGAAGGCTTTCCAAGTATGCACCACTGATTCACATAATGAAGGTCAAACCTGAGAAAGTAAACTTAATCATTGGTTCTGGTGGGAAGAAGGTCAAAAGTATTATAGAAGAGACCGGAGTAGATGCAATTGACACACAAGAGGATGGGATAGTGAAAATTACTGCCAGGGATTTATCGAGTTTAGAAAAGTCTAAAGCTATTATTGCTAATTTGACAATGGTTCCAACTGTTGGTGATATCTACAGGAATTGCGAAATTAAAACAATAGCTCCATATGGAGTATTTGTGGAAATAGCACCTGGCCGAGAGGGACTTTGCCATATTAGTGAGTTAAGTTCAGATTGGCTGGCAAAGGCAGAAGATGCTTTTAAGGTGGGAGATCATGTTGATGTTAAACTTATTGAGGTAAATGAGAAGGGGCAACTTCGCCTTAGCCGCCGAGCATTACTTCCAGATGCAGATCCTGAGAATGCTGGTGTAAGGCAGCCTACAGGTGACTCCAAAGATGTACCTTCTCAAACTTCGGACAAAAACAAAGTCAAAGGTACAAGCTCACCTAAAAATAATTCATCAGAAAGTACTCTGCTCCCACAAAAAAAGTTCATCCGGAGATCAGTCAGCCCCGCCAAAGATAGACAAAATATTAATAATGATGCGACAAAGAAGAGCAGCAGTAGAGTAGTGAGCAGTTCCAGCAAGGATGAAAATACTCTAGTAAATGGAGGTGCTAACATTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0004654 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006139 GO:0006396 GO:0006401 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008299 GO:0008408 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010322 GO:0010323 GO:0010467 GO:0010563 GO:0010565 GO:0010675 GO:0010677 GO:0015994 GO:0015995 GO:0016036 GO:0016070 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016119 GO:0016120 GO:0016122 GO:0016123 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0018130 GO:0019216 GO:0019220 GO:0019222 GO:0019438 GO:0019439 GO:0019747 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031425 GO:0031667 GO:0031668 GO:0031669 GO:0033013 GO:0033014 GO:0033554 GO:0034641 GO:0034655 GO:0042214 GO:0042440 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045827 GO:0045833 GO:0045912 GO:0045936 GO:0046148 GO:0046246 GO:0046483 GO:0046700 GO:0046890 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051174 GO:0051186 GO:0051188 GO:0051716 GO:0062012 GO:0062014 GO:0065007 GO:0071071 GO:0071072 GO:0071496 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1903725 GO:1903726
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko03018 map00230 map00240 map03018
Pfam Domains
Protein Families
KH_1 PNPase RNase_PH RNase_PH_C S1

Protein Analysis

920

Amino Acids

99.97

Weight (kDa)

6.24

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 87 - 217 3.5e-24 3' exoribonuclease family, domain 1
RNase_PH_C PF03725 222 - 283 8.2e-14 3' exoribonuclease family, domain 2
RNase_PH PF01138 446 - 579 2.6e-28 3' exoribonuclease family, domain 1
KH_1 PF00013 686 - 742 6.2e-06 KH domain
S1 PF00575 759 - 821 2e-11 S1 RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1283
Acc36I ACCTGC 1 cut(s) 419
AccB7I CCANNNNNTGG 1 cut(s) 2252
AccBSI CCGCTC 1 cut(s) 1923
AccI GTMKAC 1 cut(s) 1239
AccII CGCG 1 cut(s) 106
AccIII TCCGGA 1 cut(s) 2628
AciI CCGC 9 cut(s) 104, 209, 212, 1321, 1811, 1923, 1991, 2458, 2646
AclWI GGATC 2 cut(s) 1843, 2477
AcoI YGGCCR 2 cut(s) 1972, 2323
AcsI RAATTY 2 cut(s) 1274, 1790
AcuI CTGAAG 2 cut(s) 1860, 2004
AcyI GRCGYC 2 cut(s) 195, 1691
AdeI CACNNNGTG 1 cut(s) 1436
AfaI GTAC 7 cut(s) 855, 1116, 1508, 1644, 2532, 2569, 2602
AfiI CCNNNNNNNGG 4 cut(s) 20, 1332, 2021, 2252
AflIII ACRYGT 1 cut(s) 1645
AgsI TTSAA 7 cut(s) 532, 1130, 1258, 1604, 1683, 1867, 2002
AhlI ACTAGT 1 cut(s) 437
AjiI CACGTC 1 cut(s) 1243
AjnI CCWGG 3 cut(s) 1785, 2186, 2320
AjuI GAANNNNNNNTTGG 2 cut(s) 110, 142
Alw21I GWGCWC 6 cut(s) 991, 1390, 1555, 1600, 1658, 1748
Alw26I GTCTC 3 cut(s) 269, 286, 2126
AlwI GGATC 2 cut(s) 1843, 2477
AlwNI CAGNNNCTG 2 cut(s) 620, 2486
Ama87I CYCGRG 1 cut(s) 809
Aor13HI TCCGGA 1 cut(s) 2628
AoxI GGCC 5 cut(s) 98, 168, 509, 1972, 2323
ApeKI GCWGC 8 cut(s) 108, 206, 425, 617, 751, 823, 2506, 2691
ApoI RAATTY 2 cut(s) 1274, 1790
ArsI GACNNNNNNTTYG 2 cut(s) 2544, 2576
AseI ATTAAT 1 cut(s) 2667
Asp700I GAANNNNTTC 3 cut(s) 536, 1493, 2029
AspLEI GCGC 4 cut(s) 38, 108, 1284, 1290
AspS9I GGNCC 2 cut(s) 99, 1323
AsuHPI GGTGA 9 cut(s) 704, 983, 1178, 1193, 1448, 1930, 2267, 2528, 2568
AsuNHI GCTAGC 1 cut(s) 754
AvaI CYCGRG 1 cut(s) 809
AvaII GGWCC 1 cut(s) 1323
BaeGI GKGCMC 1 cut(s) 1378
BanII GRGCYC 3 cut(s) 75, 991, 1600
BauI CACGAG 2 cut(s) 479, 1398
BbsI GAAGAC 1 cut(s) 738
Bbv12I GWGCWC 6 cut(s) 991, 1390, 1555, 1600, 1658, 1748
BbvI GCAGC 8 cut(s) 120, 193, 412, 604, 738, 810, 2518, 2703
BcgI CGANNNNNNTGC 2 cut(s) 846, 880
BciT130I CCWGG 3 cut(s) 1787, 2188, 2322
BciVI GTATCC 2 cut(s) 1081, 1329
BcoDI GTCTC 3 cut(s) 269, 286, 2126
BcuI ACTAGT 1 cut(s) 437
BfaI CTAG 8 cut(s) 15, 438, 755, 1014, 1469, 1557, 1778, 2735
BfmI CTRYAG 8 cut(s) 130, 426, 663, 992, 1718, 1749, 2263, 2511
BfuAI ACCTGC 1 cut(s) 419
BfuI GTATCC 2 cut(s) 1081, 1329
BlpI GCTNAGC 1 cut(s) 1711
BmcAI AGTACT 1 cut(s) 2602
Bme1390I CCNGG 3 cut(s) 1787, 2188, 2322
Bme18I GGWCC 1 cut(s) 1323
BmeT110I CYCGRG 1 cut(s) 809
BmgBI CACGTC 1 cut(s) 1243
BmgT120I GGNCC 2 cut(s) 99, 1323
BmiI GGNNCC 4 cut(s) 101, 648, 1325, 2244
BmrFI CCNGG 3 cut(s) 1787, 2188, 2322
BmtI GCTAGC 1 cut(s) 758
BpiI GAAGAC 1 cut(s) 738
BpmI CTGGAG 2 cut(s) 1487, 1749
Bpu10I CCTNAGC 2 cut(s) 939, 2453
Bpu1102I GCTNAGC 1 cut(s) 1711
BpuEI CTTGAG 1 cut(s) 1336
BsaAI YACGTR 1 cut(s) 1646
BsaBI GATNNNNATC 1 cut(s) 2481
BsaHI GRCGYC 2 cut(s) 195, 1691
BsaI GGTCTC 1 cut(s) 2126
BsaJI CCNNGG 4 cut(s) 810, 1370, 1785, 2187
BsaWI WCCGGW 3 cut(s) 200, 2135, 2628
BsaXI ACNNNNNCTCC 6 cut(s) 2275, 2292, 2305, 2322, 2391, 2421
Bsc4I CCNNNNNNNGG 4 cut(s) 20, 1332, 2021, 2252
Bse1I ACTGG 4 cut(s) 101, 300, 1504, 1837
Bse3DI GCAATG 3 cut(s) 874, 1678, 1770
Bse8I GATNNNNATC 1 cut(s) 2481
BseAI TCCGGA 1 cut(s) 2628
BseBI CCWGG 3 cut(s) 1787, 2188, 2322
BseDI CCNNGG 4 cut(s) 810, 1370, 1785, 2187
BseJI GATNNNNATC 1 cut(s) 2481
BseLI CCNNNNNNNGG 4 cut(s) 20, 1332, 2021, 2252
BseMI GCAATG 3 cut(s) 874, 1678, 1770
BseNI ACTGG 4 cut(s) 101, 300, 1504, 1837
BseRI GAGGAG 1 cut(s) 134
BseSI GKGCMC 1 cut(s) 1378
BseXI GCAGC 8 cut(s) 120, 193, 412, 604, 738, 810, 2518, 2703
BsgI GTGCAG 1 cut(s) 14
Bsh1236I CGCG 1 cut(s) 106
BshFI GGCC 5 cut(s) 100, 170, 511, 1974, 2325
BsiHKAI GWGCWC 6 cut(s) 991, 1390, 1555, 1600, 1658, 1748
BsiHKCI CYCGRG 1 cut(s) 809
BsiSI CCGG 4 cut(s) 201, 1975, 2136, 2629
BslFI GGGAC 2 cut(s) 124, 2346
BslI CCNNNNNNNGG 4 cut(s) 20, 1332, 2021, 2252
BsmAI GTCTC 3 cut(s) 269, 286, 2126
BsmFI GGGAC 2 cut(s) 124, 2346
BsmI GAATGC 2 cut(s) 1587, 2497
BsnI GGCC 5 cut(s) 100, 170, 511, 1974, 2325
Bso31I GGTCTC 1 cut(s) 2126
BsoBI CYCGRG 1 cut(s) 809
Bsp1286I GDGCHC 8 cut(s) 75, 991, 1378, 1390, 1555, 1600, 1658, 1748
Bsp13I TCCGGA 1 cut(s) 2628
Bsp143I GATC 5 cut(s) 475, 1835, 2401, 2482, 2633
Bsp1720I GCTNAGC 1 cut(s) 1711
BspACI CCGC 9 cut(s) 104, 209, 212, 1321, 1811, 1923, 1991, 2458, 2646
BspANI GGCC 5 cut(s) 100, 170, 511, 1974, 2325
BspEI TCCGGA 1 cut(s) 2628
BspFNI CGCG 1 cut(s) 106
BspLI GGNNCC 4 cut(s) 101, 648, 1325, 2244
BspMAI CTGCAG 3 cut(s) 134, 430, 996
BspMI ACCTGC 1 cut(s) 419
BspOI GCTAGC 1 cut(s) 758
BspPI GGATC 2 cut(s) 1843, 2477
BspQI GCTCTTC 2 cut(s) 1684, 2681
BspTNI GGTCTC 1 cut(s) 2126
BsrBI CCGCTC 1 cut(s) 1923
BsrDI GCAATG 3 cut(s) 874, 1678, 1770
BsrI ACTGG 4 cut(s) 101, 300, 1504, 1837
BssECI CCNNGG 4 cut(s) 810, 1370, 1785, 2187
BssMI GATC 5 cut(s) 475, 1835, 2401, 2482, 2633
BssNI GRCGYC 2 cut(s) 195, 1691
BssSI CACGAG 2 cut(s) 479, 1398
BssT1I CCWWGG 1 cut(s) 1370
Bst2BI CACGAG 2 cut(s) 479, 1398
Bst2UI CCWGG 3 cut(s) 1787, 2188, 2322
Bst4CI ACNGT 7 cut(s) 316, 378, 1114, 1413, 1642, 1998, 2251
Bst6I CTCTTC 4 cut(s) 1558, 1684, 2124, 2681
BstACI GRCGYC 2 cut(s) 195, 1691
BstAPI GCANNNNNTGC 1 cut(s) 2384
BstBAI YACGTR 1 cut(s) 1646
BstC8I GCNNGC 7 cut(s) 756, 760, 828, 1102, 1286, 1587, 2370
BstFNI CGCG 1 cut(s) 106
BstHHI GCGC 4 cut(s) 38, 108, 1284, 1290
BstKTI GATC 5 cut(s) 478, 1838, 2404, 2485, 2636
BstMAI GTCTC 3 cut(s) 269, 286, 2126
BstMBI GATC 5 cut(s) 475, 1835, 2401, 2482, 2633
BstMWI GCNNNNNNNGC 9 cut(s) 203, 614, 626, 857, 1595, 2225, 2384, 2457, 2715
BstNI CCWGG 3 cut(s) 1787, 2188, 2322
BstSCI CCNGG 3 cut(s) 1785, 2186, 2320
BstSFI CTRYAG 8 cut(s) 130, 426, 663, 992, 1718, 1749, 2263, 2511
BstSLI GKGCMC 1 cut(s) 1378
BstUI CGCG 1 cut(s) 106
BstV1I GCAGC 8 cut(s) 120, 193, 412, 604, 738, 810, 2518, 2703
BstV2I GAAGAC 1 cut(s) 738
BstX2I RGATCY 2 cut(s) 1835, 2482
BstXI CCANNNNNNTGG 1 cut(s) 1793
BstYI RGATCY 2 cut(s) 1835, 2482
BsuI GTATCC 2 cut(s) 1081, 1329
BsuRI GGCC 5 cut(s) 100, 170, 511, 1974, 2325
BtrI CACGTC 1 cut(s) 1243
BtsI GCAGTG 3 cut(s) 25, 31, 1111
BtsIMutI CAGTG 6 cut(s) 25, 31, 307, 1111, 1638, 2045
BveI ACCTGC 1 cut(s) 419
Cac8I GCNNGC 7 cut(s) 756, 760, 828, 1102, 1286, 1587, 2370
CaiI CAGNNNCTG 2 cut(s) 620, 2486
CfoI GCGC 4 cut(s) 38, 108, 1284, 1290
Cfr13I GGNCC 2 cut(s) 99, 1323
CseI GACGC 3 cut(s) 203, 506, 1680
Csp6I GTAC 7 cut(s) 854, 1115, 1507, 1643, 2531, 2568, 2601
CviAII CATG 7 cut(s) 545, 953, 1379, 1524, 1577, 1886, 2405
CviQI GTAC 7 cut(s) 854, 1115, 1507, 1643, 2531, 2568, 2601
DpnI GATC 5 cut(s) 477, 1837, 2403, 2484, 2635
DpnII GATC 5 cut(s) 475, 1835, 2401, 2482, 2633
DraI TTTAAA 1 cut(s) 454
DraIII CACNNNGTG 1 cut(s) 1436
EaeI YGGCCR 2 cut(s) 1972, 2323
Eam1104I CTCTTC 4 cut(s) 1558, 1684, 2124, 2681
EarI CTCTTC 4 cut(s) 1558, 1684, 2124, 2681
EciI GGCGGA 1 cut(s) 1336
Ecl136II GAGCTC 2 cut(s) 989, 1598
Eco130I CCWWGG 1 cut(s) 1370
Eco147I AGGCCT 2 cut(s) 170, 511
Eco24I GRGCYC 3 cut(s) 75, 991, 1600
Eco31I GGTCTC 1 cut(s) 2126
Eco32I GATATC 1 cut(s) 2260
Eco47I GGWCC 1 cut(s) 1323
Eco53kI GAGCTC 2 cut(s) 989, 1598
Eco57I CTGAAG 2 cut(s) 1860, 2004
Eco88I CYCGRG 1 cut(s) 809
EcoICRI GAGCTC 2 cut(s) 989, 1598
EcoRII CCWGG 3 cut(s) 1785, 2186, 2320
EcoRV GATATC 1 cut(s) 2260
EcoT14I CCWWGG 1 cut(s) 1370
EcoT22I ATGCAT 1 cut(s) 1849
EcoT38I GRGCYC 3 cut(s) 75, 991, 1600
ErhI CCWWGG 1 cut(s) 1370
FaeI CATG 7 cut(s) 548, 956, 1382, 1527, 1580, 1889, 2408
FaqI GGGAC 2 cut(s) 124, 2346
FatI CATG 7 cut(s) 544, 952, 1378, 1523, 1576, 1885, 2404
FauI CCCGC 3 cut(s) 111, 1916, 2653
FauNDI CATATG 1 cut(s) 2296
FblI GTMKAC 1 cut(s) 1239
FriOI GRGCYC 3 cut(s) 75, 991, 1600
FspBI CTAG 8 cut(s) 15, 438, 755, 1014, 1469, 1557, 1778, 2735
FspI TGCGCA 1 cut(s) 1283
GlaI GCGC 4 cut(s) 37, 107, 1283, 1289
GsuI CTGGAG 2 cut(s) 1487, 1749
HaeIII GGCC 5 cut(s) 100, 170, 511, 1974, 2325
HapII CCGG 4 cut(s) 201, 1975, 2136, 2629
HgaI GACGC 3 cut(s) 203, 506, 1680
HhaI GCGC 4 cut(s) 38, 108, 1284, 1290
Hin1I GRCGYC 2 cut(s) 195, 1691
Hin1II CATG 7 cut(s) 548, 956, 1382, 1527, 1580, 1889, 2408
Hin6I GCGC 4 cut(s) 36, 106, 1282, 1288
HinP1I GCGC 4 cut(s) 36, 106, 1282, 1288
HinfI GANTC 9 cut(s) 160, 599, 709, 734, 1009, 1216, 1494, 2050, 2519
HpaII CCGG 4 cut(s) 201, 1975, 2136, 2629
HphI GGTGA 9 cut(s) 704, 983, 1178, 1193, 1448, 1930, 2267, 2528, 2568
Hpy166II GTNNAC 6 cut(s) 340, 374, 1240, 1361, 1509, 2083
Hpy8I GTNNAC 6 cut(s) 340, 374, 1240, 1361, 1509, 2083
Hpy99I CGWCG 1 cut(s) 197
HpyCH4III ACNGT 7 cut(s) 316, 378, 1114, 1413, 1642, 1998, 2251
HpyCH4IV ACGT 3 cut(s) 1242, 1339, 1645
HpyF10VI GCNNNNNNNGC 9 cut(s) 203, 614, 626, 857, 1595, 2225, 2384, 2457, 2715
HpySE526I ACGT 3 cut(s) 1242, 1339, 1645
Hsp92I GRCGYC 2 cut(s) 195, 1691
Hsp92II CATG 7 cut(s) 548, 956, 1382, 1527, 1580, 1889, 2408
HspAI GCGC 4 cut(s) 36, 106, 1282, 1288
Kpn2I TCCGGA 1 cut(s) 2628
Kzo9I GATC 5 cut(s) 475, 1835, 2401, 2482, 2633
LguI GCTCTTC 2 cut(s) 1684, 2681
LmnI GCTCC 6 cut(s) 203, 412, 1550, 2012, 2296, 2613
Lsp1109I GCAGC 8 cut(s) 120, 193, 412, 604, 738, 810, 2518, 2703
MaeI CTAG 8 cut(s) 15, 438, 755, 1014, 1469, 1557, 1778, 2735
MaeII ACGT 3 cut(s) 1242, 1339, 1645
MaeIII GTNAC 9 cut(s) 220, 310, 316, 610, 692, 1264, 1426, 1891, 2516
MalI GATC 5 cut(s) 477, 1837, 2403, 2484, 2635
MbiI CCGCTC 1 cut(s) 1923
MboI GATC 5 cut(s) 475, 1835, 2401, 2482, 2633
MfeI CAATTG 1 cut(s) 2148
MflI RGATCY 2 cut(s) 1835, 2482
MhlI GDGCHC 8 cut(s) 75, 991, 1378, 1390, 1555, 1600, 1658, 1748
MlyI GAGTC 3 cut(s) 728, 1210, 2513
MmeI TCCRAC 7 cut(s) 413, 545, 723, 737, 1519, 1735, 2270
Mph1103I ATGCAT 1 cut(s) 1849
MroI TCCGGA 1 cut(s) 2628
MroXI GAANNNNTTC 3 cut(s) 536, 1493, 2029
MslI CAYNNNNRTG 3 cut(s) 1383, 2346, 2409
MspA1I CMGCKG 1 cut(s) 617
MspI CCGG 4 cut(s) 201, 1975, 2136, 2629
MspR9I CCNGG 3 cut(s) 1787, 2188, 2322
MunI CAATTG 1 cut(s) 2148
Mva1269I GAATGC 2 cut(s) 1587, 2497
MvaI CCWGG 3 cut(s) 1787, 2188, 2322
MvnI CGCG 1 cut(s) 106
MwoI GCNNNNNNNGC 9 cut(s) 203, 614, 626, 857, 1595, 2225, 2384, 2457, 2715
NdeI CATATG 1 cut(s) 2296
NdeII GATC 5 cut(s) 475, 1835, 2401, 2482, 2633
NheI GCTAGC 1 cut(s) 754
NlaIII CATG 7 cut(s) 548, 956, 1382, 1527, 1580, 1889, 2408
NlaIV GGNNCC 4 cut(s) 101, 648, 1325, 2244
NmeAIII GCCGAG 2 cut(s) 2351, 2486
NmuCI GTSAC 4 cut(s) 316, 610, 692, 2516
NsbI TGCGCA 1 cut(s) 1283
NsiI ATGCAT 1 cut(s) 1849
PceI AGGCCT 2 cut(s) 170, 511
PciSI GCTCTTC 2 cut(s) 1684, 2681
PctI GAATGC 2 cut(s) 1587, 2497
PdmI GAANNNNTTC 3 cut(s) 536, 1493, 2029
PfeI GAWTC 6 cut(s) 160, 599, 709, 1009, 1494, 2050
PflMI CCANNNNNTGG 1 cut(s) 2252
PleI GAGTC 3 cut(s) 728, 1210, 2513
PpsI GAGTC 3 cut(s) 728, 1210, 2513
Ppu21I YACGTR 1 cut(s) 1646
PshBI ATTAAT 1 cut(s) 2667
Psp124BI GAGCTC 2 cut(s) 991, 1600
Psp6I CCWGG 3 cut(s) 1785, 2186, 2320
PspGI CCWGG 3 cut(s) 1785, 2186, 2320
PspN4I GGNNCC 4 cut(s) 101, 648, 1325, 2244
PspPI GGNCC 2 cut(s) 99, 1323
PstI CTGCAG 3 cut(s) 134, 430, 996
PstNI CAGNNNCTG 2 cut(s) 620, 2486
PsuI RGATCY 2 cut(s) 1835, 2482
PvuII CAGCTG 1 cut(s) 617
RsaI GTAC 7 cut(s) 855, 1116, 1508, 1644, 2532, 2569, 2602
RsaNI GTAC 7 cut(s) 854, 1115, 1507, 1643, 2531, 2568, 2601
RseI CAYNNNNRTG 3 cut(s) 1383, 2346, 2409
SacI GAGCTC 2 cut(s) 991, 1600
SapI GCTCTTC 2 cut(s) 1684, 2681
Sau3AI GATC 5 cut(s) 475, 1835, 2401, 2482, 2633
Sau96I GGNCC 2 cut(s) 99, 1323
ScaI AGTACT 1 cut(s) 2602
SchI GAGTC 3 cut(s) 728, 1210, 2513
ScrFI CCNGG 3 cut(s) 1787, 2188, 2322
SduI GDGCHC 8 cut(s) 75, 991, 1378, 1390, 1555, 1600, 1658, 1748
SfcI CTRYAG 8 cut(s) 130, 426, 663, 992, 1718, 1749, 2263, 2511
SinI GGWCC 1 cut(s) 1323
SmiMI CAYNNNNRTG 3 cut(s) 1383, 2346, 2409
SmlI CTYRAG 1 cut(s) 1351
SmoI CTYRAG 1 cut(s) 1351
SpeI ACTAGT 1 cut(s) 437
SseBI AGGCCT 2 cut(s) 170, 511
SsiI CCGC 9 cut(s) 104, 209, 212, 1321, 1811, 1923, 1991, 2458, 2646
SspI AATATT 3 cut(s) 777, 1611, 2665
SspMI CTAG 8 cut(s) 15, 438, 755, 1014, 1469, 1557, 1778, 2735
SstI GAGCTC 2 cut(s) 991, 1600
StuI AGGCCT 2 cut(s) 170, 511
StyD4I CCNGG 3 cut(s) 1785, 2186, 2320
StyI CCWWGG 1 cut(s) 1370
TaaI ACNGT 7 cut(s) 316, 378, 1114, 1413, 1642, 1998, 2251
TaiI ACGT 3 cut(s) 1245, 1342, 1648
TaqI TCGA 2 cut(s) 1214, 2198
TaqII GACCGA 1 cut(s) 206
TatI WGTACW 2 cut(s) 1506, 2600
TauI GCSGC 2 cut(s) 212, 2460
TfiI GAWTC 6 cut(s) 160, 599, 709, 1009, 1494, 2050
TscAI CASTG 6 cut(s) 25, 38, 307, 1111, 1645, 2052
TseFI GTSAC 4 cut(s) 316, 610, 692, 2516
TseI GCWGC 8 cut(s) 108, 206, 425, 617, 751, 823, 2506, 2691
Tsp45I GTSAC 4 cut(s) 316, 610, 692, 2516
TspGWI ACGGA 4 cut(s) 226, 388, 1222, 1558
TspRI CASTG 6 cut(s) 25, 38, 307, 1111, 1645, 2052
Van91I CCANNNNNTGG 1 cut(s) 2252
VpaK11BI GGWCC 1 cut(s) 1323
VspI ATTAAT 1 cut(s) 2667
XapI RAATTY 2 cut(s) 1274, 1790
XbaI TCTAGA 1 cut(s) 1777
XmiI GTMKAC 1 cut(s) 1239
XmnI GAANNNNTTC 3 cut(s) 536, 1493, 2029
XspI CTAG 8 cut(s) 15, 438, 755, 1014, 1469, 1557, 1778, 2735
ZrmI AGTACT 1 cut(s) 2602
Zsp2I ATGCAT 1 cut(s) 1849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.