polyribonucleotide nucleotidyltransferase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G03710 |
| fragaria_vesca | FvH4_1g28580 |
| malus_domestica | MD12G1011400.v1.1 MD14G1008000.v1.1 |
| prunus_persica | Prupe.7G014600_v2.0.a1 Prupe.7G014600_v2.0.a1 |
| pyrus_communis | pycom12g00890 pycom14g00630 |
| rosa_chinensis | RchiOBHm_Chr3g0496111 |
| rosa_laevigata | RLG00000022559 |
| rosa_multiflora | Rmu_sc0009681.1_g000007 Rmu_ssc0000054.1_g000015 |
| rosa_roxburghii | Rroxscaffold_6G00389540 |
| rosa_rugosa | Rorug03G0279600 Rorug03G0279700 |
| rosa_samantha | Rh1CG091500 Rh3AG326700 Rh3BG362900 Rh3CG359300 Rh3DG362800 |
| rosa_wichuraiana | Rw3G028620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 428 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2261 |
| AccIII | TCCGGA | 1 cut(s) | 2679 |
| AciI | CCGC | 4 cut(s) | 1291, 1932, 2000, 2193 |
| AclWI | GGATC | 2 cut(s) | 1852, 2486 |
| AcoI | YGGCCR | 3 cut(s) | 192, 615, 1981 |
| AcsI | RAATTY | 3 cut(s) | 707, 1283, 1799 |
| AcuI | CTGAAG | 2 cut(s) | 1650, 1869 |
| AcvI | CACGTG | 1 cut(s) | 1409 |
| AdeI | CACNNNGTG | 1 cut(s) | 1445 |
| AfaI | GTAC | 5 cut(s) | 411, 684, 864, 1517, 1653 |
| AfeI | AGCGCT | 2 cut(s) | 425, 2475 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 20, 406, 1483, 2261 |
| AflIII | ACRYGT | 2 cut(s) | 1406, 1654 |
| AgsI | TTSAA | 9 cut(s) | 210, 463, 541, 1139, 1267, 1613, 1692, 2011, 2031 |
| AhlI | ACTAGT | 1 cut(s) | 446 |
| AjnI | CCWGG | 3 cut(s) | 1379, 2195, 2329 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 370, 402, 1609, 1641 |
| Alw21I | GWGCWC | 7 cut(s) | 1399, 1564, 1609, 1667, 1757, 1819, 2018 |
| Alw26I | GTCTC | 6 cut(s) | 278, 295, 698, 2135, 2403, 2770 |
| AlwI | GGATC | 2 cut(s) | 1852, 2486 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 629, 2280 |
| Ama87I | CYCGRG | 1 cut(s) | 2767 |
| Aor13HI | TCCGGA | 1 cut(s) | 2679 |
| Aor51HI | AGCGCT | 2 cut(s) | 425, 2475 |
| AoxI | GGCC | 6 cut(s) | 68, 192, 518, 615, 1981, 2502 |
| ApeKI | GCWGC | 5 cut(s) | 434, 626, 832, 2515, 2742 |
| ApoI | RAATTY | 3 cut(s) | 707, 1283, 1799 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 545, 1502, 2038 |
| AspLEI | GCGC | 4 cut(s) | 426, 1299, 2053, 2476 |
| AspS9I | GGNCC | 2 cut(s) | 69, 218 |
| AsuC2I | CCSGG | 2 cut(s) | 156, 201 |
| AsuII | TTCGAA | 2 cut(s) | 2369, 2596 |
| AsuNHI | GCTAGC | 1 cut(s) | 763 |
| AvaI | CYCGRG | 1 cut(s) | 2767 |
| AvaII | GGWCC | 1 cut(s) | 218 |
| AxyI | CCTNAGG | 1 cut(s) | 222 |
| BaeGI | GKGCMC | 1 cut(s) | 1387 |
| BanII | GRGCYC | 2 cut(s) | 201, 1609 |
| BbrPI | CACGTG | 1 cut(s) | 1409 |
| BbsI | GAAGAC | 2 cut(s) | 747, 2178 |
| Bbv12I | GWGCWC | 7 cut(s) | 1399, 1564, 1609, 1667, 1757, 1819, 2018 |
| BbvI | GCAGC | 5 cut(s) | 446, 638, 819, 2527, 2754 |
| BccI | CCATC | 9 cut(s) | 350, 730, 1166, 1319, 1450, 1768, 1805, 1889, 1909 |
| BceAI | ACGGC | 2 cut(s) | 602, 845 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 855, 889 |
| BciT130I | CCWGG | 3 cut(s) | 1381, 2197, 2331 |
| BclI | TGATCA | 1 cut(s) | 2097 |
| BcnI | CCSGG | 2 cut(s) | 156, 201 |
| BcoDI | GTCTC | 6 cut(s) | 278, 295, 698, 2135, 2403, 2770 |
| BcuI | ACTAGT | 1 cut(s) | 446 |
| BfaI | CTAG | 7 cut(s) | 447, 764, 1023, 1209, 1478, 1566, 2208 |
| BfmI | CTRYAG | 4 cut(s) | 1001, 1758, 2272, 2520 |
| BfoI | RGCGCY | 2 cut(s) | 427, 2477 |
| BfuAI | ACCTGC | 1 cut(s) | 428 |
| BisI | GCNGC | 5 cut(s) | 435, 627, 833, 2516, 2743 |
| BlpI | GCTNAGC | 1 cut(s) | 1720 |
| BlsI | GCNGC | 5 cut(s) | 436, 628, 834, 2517, 2744 |
| Bme1390I | CCNGG | 5 cut(s) | 156, 201, 1381, 2197, 2331 |
| Bme18I | GGWCC | 1 cut(s) | 218 |
| BmeT110I | CYCGRG | 1 cut(s) | 2767 |
| BmgT120I | GGNCC | 2 cut(s) | 69, 218 |
| BmiI | GGNNCC | 1 cut(s) | 2253 |
| BmrFI | CCNGG | 5 cut(s) | 156, 201, 1381, 2197, 2331 |
| BmtI | GCTAGC | 1 cut(s) | 767 |
| BpiI | GAAGAC | 2 cut(s) | 747, 2178 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 678, 710, 1947, 1979 |
| BpmI | CTGGAG | 3 cut(s) | 1496, 1758, 2166 |
| Bpu10I | CCTNAGC | 3 cut(s) | 39, 948, 2462 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1720 |
| Bpu14I | TTCGAA | 2 cut(s) | 2369, 2596 |
| BpuEI | CTTGAG | 1 cut(s) | 2535 |
| BpuMI | CCSGG | 2 cut(s) | 156, 201 |
| BsaAI | YACGTR | 2 cut(s) | 1409, 1655 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2490 |
| BsaI | GGTCTC | 2 cut(s) | 698, 2403 |
| BsaJI | CCNNGG | 4 cut(s) | 1379, 1380, 2196, 2330 |
| BsaWI | WCCGGW | 1 cut(s) | 2679 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 672, 702, 2301, 2331 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 20, 406, 1483, 2261 |
| Bse118I | RCCGGY | 1 cut(s) | 977 |
| Bse1I | ACTGG | 5 cut(s) | 309, 1513, 1846, 2149, 2505 |
| Bse21I | CCTNAGG | 1 cut(s) | 222 |
| Bse3DI | GCAATG | 5 cut(s) | 883, 1687, 1724, 1940, 2779 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2490 |
| BseAI | TCCGGA | 1 cut(s) | 2679 |
| BseBI | CCWGG | 3 cut(s) | 1381, 2197, 2331 |
| BseDI | CCNNGG | 4 cut(s) | 1379, 1380, 2196, 2330 |
| BseGI | GGATG | 6 cut(s) | 862, 1102, 1153, 1177, 1277, 1721 |
| BseJI | GATNNNNATC | 1 cut(s) | 2490 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 20, 406, 1483, 2261 |
| BseMI | GCAATG | 5 cut(s) | 883, 1687, 1724, 1940, 2779 |
| BseMII | CTCAG | 7 cut(s) | 236, 572, 939, 1233, 1590, 1785, 2073 |
| BseNI | ACTGG | 5 cut(s) | 309, 1513, 1846, 2149, 2505 |
| BseRI | GAGGAG | 1 cut(s) | 2013 |
| BseSI | GKGCMC | 1 cut(s) | 1387 |
| BseXI | GCAGC | 5 cut(s) | 446, 638, 819, 2527, 2754 |
| BsgI | GTGCAG | 2 cut(s) | 14, 41 |
| BshFI | GGCC | 6 cut(s) | 70, 194, 520, 617, 1983, 2504 |
| BsiHKAI | GWGCWC | 7 cut(s) | 1399, 1564, 1609, 1667, 1757, 1819, 2018 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2767 |
| BsiSI | CCGG | 5 cut(s) | 156, 201, 978, 1984, 2680 |
| BsiWI | CGTACG | 1 cut(s) | 862 |
| BslFI | GGGAC | 4 cut(s) | 127, 1025, 2355, 2618 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 20, 406, 1483, 2261 |
| BsmAI | GTCTC | 6 cut(s) | 278, 295, 698, 2135, 2403, 2770 |
| BsmBI | CGTCTC | 1 cut(s) | 2770 |
| BsmFI | GGGAC | 4 cut(s) | 127, 1025, 2355, 2618 |
| BsmI | GAATGC | 2 cut(s) | 1596, 2592 |
| BsnI | GGCC | 6 cut(s) | 70, 194, 520, 617, 1983, 2504 |
| Bso31I | GGTCTC | 2 cut(s) | 698, 2403 |
| BsoBI | CYCGRG | 1 cut(s) | 2767 |
| Bsp119I | TTCGAA | 2 cut(s) | 2369, 2596 |
| Bsp1286I | GDGCHC | 9 cut(s) | 201, 1387, 1399, 1564, 1609, 1667, 1757, 1819, 2018 |
| Bsp13I | TCCGGA | 1 cut(s) | 2679 |
| Bsp143I | GATC | 5 cut(s) | 484, 1844, 2097, 2286, 2491 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1720 |
| BspACI | CCGC | 4 cut(s) | 1291, 1932, 2000, 2193 |
| BspANI | GGCC | 6 cut(s) | 70, 194, 520, 617, 1983, 2504 |
| BspCNI | CTCAG | 7 cut(s) | 235, 573, 940, 1234, 1591, 1786, 2074 |
| BspEI | TCCGGA | 1 cut(s) | 2679 |
| BspHI | TCATGA | 1 cut(s) | 487 |
| BspLI | GGNNCC | 1 cut(s) | 2253 |
| BspMAI | CTGCAG | 1 cut(s) | 1005 |
| BspMI | ACCTGC | 1 cut(s) | 428 |
| BspOI | GCTAGC | 1 cut(s) | 767 |
| BspPI | GGATC | 2 cut(s) | 1852, 2486 |
| BspQI | GCTCTTC | 2 cut(s) | 1693, 2732 |
| BspT104I | TTCGAA | 2 cut(s) | 2369, 2596 |
| BspTNI | GGTCTC | 2 cut(s) | 698, 2403 |
| BsrDI | GCAATG | 5 cut(s) | 883, 1687, 1724, 1940, 2779 |
| BsrFI | RCCGGY | 1 cut(s) | 977 |
| BsrI | ACTGG | 5 cut(s) | 309, 1513, 1846, 2149, 2505 |
| BssAI | RCCGGY | 1 cut(s) | 977 |
| BssECI | CCNNGG | 4 cut(s) | 1379, 1380, 2196, 2330 |
| BssMI | GATC | 5 cut(s) | 484, 1844, 2097, 2286, 2491 |
| Bst2UI | CCWGG | 3 cut(s) | 1381, 2197, 2331 |
| Bst4CI | ACNGT | 5 cut(s) | 218, 325, 593, 1422, 1651 |
| Bst6I | CTCTTC | 7 cut(s) | 89, 1493, 1567, 1693, 2120, 2133, 2732 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2393 |
| BstBAI | YACGTR | 2 cut(s) | 1409, 1655 |
| BstBI | TTCGAA | 2 cut(s) | 2369, 2596 |
| BstC8I | GCNNGC | 6 cut(s) | 765, 769, 837, 1596, 2379, 2627 |
| BstF5I | GGATG | 6 cut(s) | 862, 1102, 1153, 1177, 1277, 1721 |
| BstH2I | RGCGCY | 2 cut(s) | 427, 2477 |
| BstHHI | GCGC | 4 cut(s) | 426, 1299, 2053, 2476 |
| BstKTI | GATC | 5 cut(s) | 487, 1847, 2100, 2289, 2494 |
| BstMAI | GTCTC | 6 cut(s) | 278, 295, 698, 2135, 2403, 2770 |
| BstMBI | GATC | 5 cut(s) | 484, 1844, 2097, 2286, 2491 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 117, 623, 635, 866, 1604, 2393, 2769 |
| BstNI | CCWGG | 3 cut(s) | 1381, 2197, 2331 |
| BstSCI | CCNGG | 5 cut(s) | 154, 199, 1379, 2195, 2329 |
| BstSFI | CTRYAG | 4 cut(s) | 1001, 1758, 2272, 2520 |
| BstSLI | GKGCMC | 1 cut(s) | 1387 |
| BstV1I | GCAGC | 5 cut(s) | 446, 638, 819, 2527, 2754 |
| BstV2I | GAAGAC | 2 cut(s) | 747, 2178 |
| BstX2I | RGATCY | 2 cut(s) | 1844, 2491 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2203 |
| BstYI | RGATCY | 2 cut(s) | 1844, 2491 |
| Bsu36I | CCTNAGG | 1 cut(s) | 222 |
| BsuRI | GGCC | 6 cut(s) | 70, 194, 520, 617, 1983, 2504 |
| BtgZI | GCGATG | 1 cut(s) | 1787 |
| BtsCI | GGATG | 6 cut(s) | 862, 1102, 1153, 1177, 1277, 1721 |
| BtsI | GCAGTG | 4 cut(s) | 31, 645, 1120, 2752 |
| BveI | ACCTGC | 1 cut(s) | 428 |
| Cac8I | GCNNGC | 6 cut(s) | 765, 769, 837, 1596, 2379, 2627 |
| CaiI | CAGNNNCTG | 2 cut(s) | 629, 2280 |
| CciI | TCATGA | 1 cut(s) | 487 |
| CfoI | GCGC | 4 cut(s) | 426, 1299, 2053, 2476 |
| Cfr10I | RCCGGY | 1 cut(s) | 977 |
| Cfr13I | GGNCC | 2 cut(s) | 69, 218 |
| CseI | GACGC | 2 cut(s) | 515, 2752 |
| Csp6I | GTAC | 5 cut(s) | 410, 683, 863, 1516, 1652 |
| CviAII | CATG | 6 cut(s) | 488, 554, 962, 1388, 1533, 1586 |
| CviQI | GTAC | 5 cut(s) | 410, 683, 863, 1516, 1652 |
| DpnI | GATC | 5 cut(s) | 486, 1846, 2099, 2288, 2493 |
| DpnII | GATC | 5 cut(s) | 484, 1844, 2097, 2286, 2491 |
| DraI | TTTAAA | 1 cut(s) | 2401 |
| DraIII | CACNNNGTG | 1 cut(s) | 1445 |
| EaeI | YGGCCR | 3 cut(s) | 192, 615, 1981 |
| Eam1104I | CTCTTC | 7 cut(s) | 89, 1493, 1567, 1693, 2120, 2133, 2732 |
| EarI | CTCTTC | 7 cut(s) | 89, 1493, 1567, 1693, 2120, 2133, 2732 |
| Ecl136II | GAGCTC | 1 cut(s) | 1607 |
| Eco147I | AGGCCT | 1 cut(s) | 520 |
| Eco24I | GRGCYC | 2 cut(s) | 201, 1609 |
| Eco31I | GGTCTC | 2 cut(s) | 698, 2403 |
| Eco32I | GATATC | 1 cut(s) | 2269 |
| Eco47I | GGWCC | 1 cut(s) | 218 |
| Eco47III | AGCGCT | 2 cut(s) | 425, 2475 |
| Eco53kI | GAGCTC | 1 cut(s) | 1607 |
| Eco57I | CTGAAG | 2 cut(s) | 1650, 1869 |
| Eco72I | CACGTG | 1 cut(s) | 1409 |
| Eco81I | CCTNAGG | 1 cut(s) | 222 |
| Eco88I | CYCGRG | 1 cut(s) | 2767 |
| EcoICRI | GAGCTC | 1 cut(s) | 1607 |
| EcoRII | CCWGG | 3 cut(s) | 1379, 2195, 2329 |
| EcoRV | GATATC | 1 cut(s) | 2269 |
| EcoT22I | ATGCAT | 1 cut(s) | 1858 |
| EcoT38I | GRGCYC | 2 cut(s) | 201, 1609 |
| Esp3I | CGTCTC | 1 cut(s) | 2770 |
| FaeI | CATG | 6 cut(s) | 491, 557, 965, 1391, 1536, 1589 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 370, 402, 2591, 2623 |
| FaqI | GGGAC | 4 cut(s) | 127, 1025, 2355, 2618 |
| FatI | CATG | 6 cut(s) | 487, 553, 961, 1387, 1532, 1585 |
| FauI | CCCGC | 1 cut(s) | 1925 |
| FauNDI | CATATG | 1 cut(s) | 2305 |
| FbaI | TGATCA | 1 cut(s) | 2097 |
| Fnu4HI | GCNGC | 5 cut(s) | 435, 627, 833, 2516, 2743 |
| FokI | GGATG | 6 cut(s) | 869, 1109, 1160, 1184, 1264, 1728 |
| FriOI | GRGCYC | 2 cut(s) | 201, 1609 |
| Fsp4HI | GCNGC | 5 cut(s) | 435, 627, 833, 2516, 2743 |
| FspBI | CTAG | 7 cut(s) | 447, 764, 1023, 1209, 1478, 1566, 2208 |
| GlaI | GCGC | 4 cut(s) | 425, 1298, 2052, 2475 |
| GluI | GCNGC | 5 cut(s) | 435, 627, 833, 2516, 2743 |
| GsuI | CTGGAG | 3 cut(s) | 1496, 1758, 2166 |
| HaeII | RGCGCY | 2 cut(s) | 427, 2477 |
| HaeIII | GGCC | 6 cut(s) | 70, 194, 520, 617, 1983, 2504 |
| HapII | CCGG | 5 cut(s) | 156, 201, 978, 1984, 2680 |
| HgaI | GACGC | 2 cut(s) | 515, 2752 |
| HhaI | GCGC | 4 cut(s) | 426, 1299, 2053, 2476 |
| Hin1II | CATG | 6 cut(s) | 491, 557, 965, 1391, 1536, 1589 |
| Hin6I | GCGC | 4 cut(s) | 424, 1297, 2051, 2474 |
| HinP1I | GCGC | 4 cut(s) | 424, 1297, 2051, 2474 |
| HincII | GTYRAC | 1 cut(s) | 1224 |
| HindII | GTYRAC | 1 cut(s) | 1224 |
| HindIII | AAGCTT | 1 cut(s) | 888 |
| HinfI | GANTC | 6 cut(s) | 608, 718, 743, 1018, 1825, 2059 |
| HpaII | CCGG | 5 cut(s) | 156, 201, 978, 1984, 2680 |
| Hpy166II | GTNNAC | 8 cut(s) | 349, 383, 1214, 1224, 1370, 1518, 2092, 2573 |
| Hpy8I | GTNNAC | 8 cut(s) | 349, 383, 1214, 1224, 1370, 1518, 2092, 2573 |
| HpyCH4III | ACNGT | 5 cut(s) | 218, 325, 593, 1422, 1651 |
| HpyCH4IV | ACGT | 4 cut(s) | 372, 1348, 1408, 1654 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 117, 623, 635, 866, 1604, 2393, 2769 |
| HpySE526I | ACGT | 4 cut(s) | 372, 1348, 1408, 1654 |
| Hsp92II | CATG | 6 cut(s) | 491, 557, 965, 1391, 1536, 1589 |
| HspAI | GCGC | 4 cut(s) | 424, 1297, 2051, 2474 |
| Kpn2I | TCCGGA | 1 cut(s) | 2679 |
| Ksp22I | TGATCA | 1 cut(s) | 2097 |
| Kzo9I | GATC | 5 cut(s) | 484, 1844, 2097, 2286, 2491 |
| LguI | GCTCTTC | 2 cut(s) | 1693, 2732 |
| LmnI | GCTCC | 5 cut(s) | 421, 1559, 1822, 2305, 2664 |
| Lsp1109I | GCAGC | 5 cut(s) | 446, 638, 819, 2527, 2754 |
| MaeI | CTAG | 7 cut(s) | 447, 764, 1023, 1209, 1478, 1566, 2208 |
| MaeII | ACGT | 4 cut(s) | 372, 1348, 1408, 1654 |
| MalI | GATC | 5 cut(s) | 486, 1846, 2099, 2288, 2493 |
| MboI | GATC | 5 cut(s) | 484, 1844, 2097, 2286, 2491 |
| MfeI | CAATTG | 2 cut(s) | 2157, 2259 |
| MflI | RGATCY | 2 cut(s) | 1844, 2491 |
| MhlI | GDGCHC | 9 cut(s) | 201, 1387, 1399, 1564, 1609, 1667, 1757, 1819, 2018 |
| MlyI | GAGTC | 1 cut(s) | 737 |
| MmeI | TCCRAC | 5 cut(s) | 554, 732, 1528, 2279, 2386 |
| Mph1103I | ATGCAT | 1 cut(s) | 1858 |
| MroI | TCCGGA | 1 cut(s) | 2679 |
| MroXI | GAANNNNTTC | 3 cut(s) | 545, 1502, 2038 |
| MseI | TTAA | 6 cut(s) | 897, 1356, 1875, 2400, 2424, 2757 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1392, 2355, 2418 |
| MspA1I | CMGCKG | 1 cut(s) | 629 |
| MspI | CCGG | 5 cut(s) | 156, 201, 978, 1984, 2680 |
| MspR9I | CCNGG | 5 cut(s) | 156, 201, 1381, 2197, 2331 |
| MunI | CAATTG | 2 cut(s) | 2157, 2259 |
| Mva1269I | GAATGC | 2 cut(s) | 1596, 2592 |
| MvaI | CCWGG | 3 cut(s) | 1381, 2197, 2331 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 117, 623, 635, 866, 1604, 2393, 2769 |
| NciI | CCSGG | 2 cut(s) | 156, 201 |
| NdeI | CATATG | 1 cut(s) | 2305 |
| NdeII | GATC | 5 cut(s) | 484, 1844, 2097, 2286, 2491 |
| NheI | GCTAGC | 1 cut(s) | 763 |
| NlaIII | CATG | 6 cut(s) | 491, 557, 965, 1391, 1536, 1589 |
| NlaIV | GGNNCC | 1 cut(s) | 2253 |
| NmeAIII | GCCGAG | 1 cut(s) | 220 |
| NmuCI | GTSAC | 5 cut(s) | 325, 701, 806, 1273, 2689 |
| NsiI | ATGCAT | 1 cut(s) | 1858 |
| NspV | TTCGAA | 2 cut(s) | 2369, 2596 |
| PaeR7I | CTCGAG | 1 cut(s) | 2767 |
| PagI | TCATGA | 1 cut(s) | 487 |
| PasI | CCCWGGG | 1 cut(s) | 1380 |
| PceI | AGGCCT | 1 cut(s) | 520 |
| PciSI | GCTCTTC | 2 cut(s) | 1693, 2732 |
| PctI | GAATGC | 2 cut(s) | 1596, 2592 |
| PdmI | GAANNNNTTC | 3 cut(s) | 545, 1502, 2038 |
| PfeI | GAWTC | 5 cut(s) | 608, 718, 1018, 1825, 2059 |
| Pfl23II | CGTACG | 1 cut(s) | 862 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2261 |
| PkrI | GCNGC | 5 cut(s) | 436, 628, 834, 2517, 2744 |
| PleI | GAGTC | 1 cut(s) | 737 |
| PmaCI | CACGTG | 1 cut(s) | 1409 |
| PmlI | CACGTG | 1 cut(s) | 1409 |
| PpsI | GAGTC | 1 cut(s) | 737 |
| Ppu21I | YACGTR | 2 cut(s) | 1409, 1655 |
| Psp124BI | GAGCTC | 1 cut(s) | 1609 |
| Psp6I | CCWGG | 3 cut(s) | 1379, 2195, 2329 |
| PspCI | CACGTG | 1 cut(s) | 1409 |
| PspGI | CCWGG | 3 cut(s) | 1379, 2195, 2329 |
| PspLI | CGTACG | 1 cut(s) | 862 |
| PspN4I | GGNNCC | 1 cut(s) | 2253 |
| PspPI | GGNCC | 2 cut(s) | 69, 218 |
| PstI | CTGCAG | 1 cut(s) | 1005 |
| PstNI | CAGNNNCTG | 2 cut(s) | 629, 2280 |
| PsuI | RGATCY | 2 cut(s) | 1844, 2491 |
| PvuII | CAGCTG | 1 cut(s) | 629 |
| RsaI | GTAC | 5 cut(s) | 411, 684, 864, 1517, 1653 |
| RsaNI | GTAC | 5 cut(s) | 410, 683, 863, 1516, 1652 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1392, 2355, 2418 |
| SacI | GAGCTC | 1 cut(s) | 1609 |
| SapI | GCTCTTC | 2 cut(s) | 1693, 2732 |
| SaqAI | TTAA | 6 cut(s) | 897, 1356, 1875, 2400, 2424, 2757 |
| SatI | GCNGC | 5 cut(s) | 435, 627, 833, 2516, 2743 |
| Sau3AI | GATC | 5 cut(s) | 484, 1844, 2097, 2286, 2491 |
| Sau96I | GGNCC | 2 cut(s) | 69, 218 |
| SchI | GAGTC | 1 cut(s) | 737 |
| ScrFI | CCNGG | 5 cut(s) | 156, 201, 1381, 2197, 2331 |
| SduI | GDGCHC | 9 cut(s) | 201, 1387, 1399, 1564, 1609, 1667, 1757, 1819, 2018 |
| SfcI | CTRYAG | 4 cut(s) | 1001, 1758, 2272, 2520 |
| Sfr274I | CTCGAG | 1 cut(s) | 2767 |
| SfuI | TTCGAA | 2 cut(s) | 2369, 2596 |
| SinI | GGWCC | 1 cut(s) | 218 |
| SlaI | CTCGAG | 1 cut(s) | 2767 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1392, 2355, 2418 |
| SmlI | CTYRAG | 2 cut(s) | 2550, 2767 |
| SmoI | CTYRAG | 2 cut(s) | 2550, 2767 |
| SpeI | ACTAGT | 1 cut(s) | 446 |
| SseBI | AGGCCT | 1 cut(s) | 520 |
| SsiI | CCGC | 4 cut(s) | 1291, 1932, 2000, 2193 |
| SspI | AATATT | 1 cut(s) | 786 |
| SspMI | CTAG | 7 cut(s) | 447, 764, 1023, 1209, 1478, 1566, 2208 |
| SstI | GAGCTC | 1 cut(s) | 1609 |
| StuI | AGGCCT | 1 cut(s) | 520 |
| StyD4I | CCNGG | 5 cut(s) | 154, 199, 1379, 2195, 2329 |
| TaaI | ACNGT | 5 cut(s) | 218, 325, 593, 1422, 1651 |
| TaiI | ACGT | 4 cut(s) | 375, 1351, 1411, 1657 |
| TaqI | TCGA | 4 cut(s) | 442, 2369, 2596, 2768 |
| TatI | WGTACW | 1 cut(s) | 1515 |
| TfiI | GAWTC | 5 cut(s) | 608, 718, 1018, 1825, 2059 |
| Tru1I | TTAA | 6 cut(s) | 897, 1356, 1875, 2400, 2424, 2757 |
| Tru9I | TTAA | 6 cut(s) | 897, 1356, 1875, 2400, 2424, 2757 |
| TseFI | GTSAC | 5 cut(s) | 325, 701, 806, 1273, 2689 |
| TseI | GCWGC | 5 cut(s) | 434, 626, 832, 2515, 2742 |
| Tsp45I | GTSAC | 5 cut(s) | 325, 701, 806, 1273, 2689 |
| TspDTI | ATGAA | 6 cut(s) | 570, 1187, 1200, 1506, 1905, 2084 |
| TspGWI | ACGGA | 2 cut(s) | 348, 1567 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2261 |
| VpaK11BI | GGWCC | 1 cut(s) | 218 |
| XapI | RAATTY | 3 cut(s) | 707, 1283, 1799 |
| XhoI | CTCGAG | 1 cut(s) | 2767 |
| XmnI | GAANNNNTTC | 3 cut(s) | 545, 1502, 2038 |
| XspI | CTAG | 7 cut(s) | 447, 764, 1023, 1209, 1478, 1566, 2208 |
| Zsp2I | ATGCAT | 1 cut(s) | 1858 |