Rh3BG362900

polyribonucleotide nucleotidyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0009860
Physical Location & Seq
Reverse (-)
44485158 .. 44513245
28088 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG362900.1

Sequence Viewer

Length: 2775 bp
ATGTTGGCAAACCCTAGCAGTGGCAGGCTGCACTGCGCTAAACCCTTTCATTTCCAGCCAAACCCAAAATCAAACGAGCCCAAATGTTTTGTGTTCCGAAACTGGCCCCCGCGCAGCAATTCCAAGTCCAAGTCCAAGTTCTGCAGTTTGTCCCTCCTCGTTCCCAGAAAGAATCGCAAGGCCTTTGGCATCAGAGCTTTGACCGACGCCGCCGGAGCTGCGGCGGTTGATGTCACTCAGCCCTATTCCGTCAAAATCCCCGTTGGTGATAGACACATTTTGATTGAGACAGGTCATATTGGGAGACAAGCCAGTGCTTCTGTTACAGTCACAGATGGAGAAACTATTGTTTACACATCTGTGTGTTTGGCTGATACTCCAAGTGAACCGTCAGACTTTTTCCCTCTTTCCGTTCATTATCAGGAGCGTTTTTCGGCAGCAGGTCGGACTAGTGGAGGCTTTTTCAAACGAGAAGGAAGGGCAAAAGATCACGAGGTTCTAATTTGCAGATTGATTGATAGGCCTTTGCGTCCAACTATGTTGAATGGCTTCTACCATGAAACTCAGATACTTTCTTGGGTGCTGAGTTATGACGGTTTGCACTCTCCTGATTCTTTGGCAGTCACAGCAGCTGGAATAGCTGTTGCTCTTTCAGAGGTTCCAAACACAAAAACTATAGCAGGAGTTAGAATTGGTCTTGTTGGTGGCAAATTTATTGTGAATCCAACAACTAAGGAGATGGAAGACTCTGAGTTGGACTTGCTGCTAGCTGGCACAGATAGTGCAATATTGATGATAGAGGGTTATTGTGATTTTCTGCCCGAGGAAAAGTTGCTGCAAGCAATAGAAGTTGGGCAGGATGCTGTACGAGCAATTTGCAATGAGGTGGAGGCTTTGGTTAAGAAGTGTGGGAAGCCAAAAATGTTTGATGCAATTAAATTACCTCCCCCTGAGCTATATAATCATGTTGAGGAAATTGCTGGTGATGAGTTGGTAAGAGCTCTGCAGATTACGCACAAGATTCCTAGAAGAAAAGCCCTGTTGTCATTGGAAGGAGAAGTTTTAACTATACTTACTGAAAAGGGATATGTTAGTAAGGATACAGCTCTTGCAGGCAGTGAAACAGTACCAGATATATTTGAAGATGAAGATGAGGATGAGGAAGTGATTGTGGATGGTGAAGTAGATGAAGGTGATGTTCACATAAAGCCTACCTCACGGAAATCGACTCCCTTGTTTTTTTCTGAGGTAGACGTGAAGCTGGTATTCAAAGAAGTAACATCCAAATTTTTGCGCAGGCGCATTGTGGAGGGTGGAAGAAGAAGTGATGGGCGGACCCCAGAAGGGATACGTCCAATTAACTCAAGATGTGGACTACTTCCAAGGGCACATGGAAGTGCTCTTTTCACACGAGGGGAAACACAGTCATTGGCTGTGGTTACACTTGGTGATAAGCAGATGGCTCAGAGGATAGACAATCTAGTGGGTGTCGATGAATGGAAAAGATTCTATCTCCAGTACACATTTCCCCCTTCATGTGTTGGGGAAGTTGGACGGAATGGAGCACCTAGTAGAAGAGAAATTGGTCATGGAATGCTGGCTGAGAGAGCTCTTGAACCAATATTGCCTTGTGATGATGATTTTCCTTACACTTTACGTGTTGAGAGCACAATTACTGAAAGCAATGGCTCTTCAAGTATGGCATCTGTGTGTGGGGGATGCTTAGCACTACAGGATGCTGGAGTTCCAATCAAGTGCTCTATAGTTGGAATAGCAATGGGTCTGGTTCTAGATACCGAGGAATTTGGGGGGGATGGTTCTCCGCTTATTCTCTCTGACATAACTGGATCTGAAGATGCATCAGGGGATATGGATTTCAAGGTTGCTGGAAATGAACATGGTGTAACAGCTTTTCAGATGGATATAAAGGTGAGCGGGATTACTTTATCAGTTATGAGAAAGGCACTCCTACAAGCAAAAGATGGCCGGAAGCATATTATTGCGGAACTGTTGAAATGCTCCCCTCCACCTTCAGGAAGGCTTTCCAAGTATGCACCACTGATTCACATAATGAAGGTCAAACCTGAGAAGGTAAACTTAATCATTGGTTCTGGTGGGAAGAAGGTCAAAAGTATTATAGAAGAGACCGGAGTAGATGCAATTGACACACAAGAGGATGGGATAGTGAAAATTACTGCCAGGGATTTATCGAGTTTAGAAAAGTCTAAAGCTATTATTGCTAATTTGACAATGGTTCCAACTGTTGGTGATATCTACAGGAATTGCGAAATTAAAACAATAGCTCCATATGGAGTATTTGTGGAAATAGCACCTGGCCGAGAGGGACTTTGCCATATTAGTGAGTTAAGTTCAGATTGGCTGGCAAAGGCAGAAGATGCTTTTAAGGTGGGAGATTATGTTGATGTTAAACTTATTGAGGTAAATGAGAAGGGACAACTTCGCCTTAGCCGCCGAGCATTACTTCCAGATGCAGATCCTGAGAATGCCGGTGTAAGGCAGCCTACAGGTGACTCCAAAGATGTACCTTCTCAAACATCGGACAAAAACAAAGTCAAAGATACAAGCTCACCTAAAAATAATTCATCAGAAAGTACTCTGCTCCCACAAAAAAAGTTCATCCGGAGATCAGTCAGCCCTGCCAAAAATAGACAAAATAGTAATAATGATGCGACAAAGAAGAGCAGCAGTAGAGTAGTGGGCAGTTCCAGCAAGGATGAAAATACCTTAGTAAATGGAGGTGCTAACATTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0004654 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006139 GO:0006396 GO:0006401 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008299 GO:0008408 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010322 GO:0010323 GO:0010467 GO:0010563 GO:0010565 GO:0010675 GO:0010677 GO:0015994 GO:0015995 GO:0016036 GO:0016070 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016119 GO:0016120 GO:0016122 GO:0016123 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0018130 GO:0019216 GO:0019220 GO:0019222 GO:0019438 GO:0019439 GO:0019747 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031425 GO:0031667 GO:0031668 GO:0031669 GO:0033013 GO:0033014 GO:0033554 GO:0034641 GO:0034655 GO:0042214 GO:0042440 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045827 GO:0045833 GO:0045912 GO:0045936 GO:0046148 GO:0046246 GO:0046483 GO:0046700 GO:0046890 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051174 GO:0051186 GO:0051188 GO:0051716 GO:0062012 GO:0062014 GO:0065007 GO:0071071 GO:0071072 GO:0071496 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1903725 GO:1903726
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko03018 map00230 map00240 map03018
Pfam Domains
Protein Families
KH_1 PNPase RNase_PH RNase_PH_C S1

Protein Analysis

924

Amino Acids

100.3

Weight (kDa)

6.18

Isoelectric Point (pI)

44.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 91 - 221 3.5e-24 3' exoribonuclease family, domain 1
RNase_PH_C PF03725 226 - 287 5.2e-14 3' exoribonuclease family, domain 2
RNase_PH PF01138 450 - 583 5.3e-28 3' exoribonuclease family, domain 1
KH_1 PF00013 690 - 746 6.2e-06 KH domain
S1 PF00575 763 - 825 4.8e-11 S1 RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1295
Acc36I ACCTGC 1 cut(s) 431
AccB7I CCANNNNNTGG 1 cut(s) 2264
AccBSI CCGCTC 1 cut(s) 1935
AccI GTMKAC 1 cut(s) 1251
AccII CGCG 1 cut(s) 112
AccIII TCCGGA 1 cut(s) 2640
AciI CCGC 9 cut(s) 110, 210, 221, 224, 1333, 1823, 1935, 2003, 2470
AclWI GGATC 2 cut(s) 1855, 2489
AcoI YGGCCR 2 cut(s) 1984, 2335
AcsI RAATTY 3 cut(s) 710, 1286, 1802
AcuI CTGAAG 2 cut(s) 1872, 2016
AcyI GRCGYC 1 cut(s) 207
AdeI CACNNNGTG 1 cut(s) 1448
AfaI GTAC 5 cut(s) 867, 1128, 1520, 2544, 2614
AfiI CCNNNNNNNGG 5 cut(s) 20, 1344, 2033, 2264, 2514
AflIII ACRYGT 1 cut(s) 1657
AgsI TTSAA 8 cut(s) 466, 544, 1142, 1270, 1616, 1695, 1879, 2014
AhlI ACTAGT 1 cut(s) 449
AjiI CACGTC 1 cut(s) 1255
AjnI CCWGG 2 cut(s) 2198, 2332
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AleI CACNNNNGTG 1 cut(s) 359
Alw21I GWGCWC 6 cut(s) 1003, 1402, 1567, 1612, 1670, 1760
Alw26I GTCTC 3 cut(s) 281, 298, 2138
AlwI GGATC 2 cut(s) 1855, 2489
AlwNI CAGNNNCTG 2 cut(s) 632, 2498
Ama87I CYCGRG 1 cut(s) 821
Aor13HI TCCGGA 1 cut(s) 2640
AoxI GGCC 5 cut(s) 104, 180, 521, 1984, 2335
ApeKI GCWGC 9 cut(s) 28, 114, 218, 437, 629, 763, 835, 2518, 2703
ApoI RAATTY 3 cut(s) 710, 1286, 1802
ArsI GACNNNNNNTTYG 2 cut(s) 2556, 2588
Asp700I GAANNNNTTC 3 cut(s) 548, 1505, 2041
AspLEI GCGC 4 cut(s) 38, 114, 1296, 1302
AspS9I GGNCC 2 cut(s) 105, 1335
AsuHPI GGTGA 9 cut(s) 278, 995, 1190, 1205, 1460, 1942, 2279, 2540, 2580
AsuNHI GCTAGC 1 cut(s) 766
AvaI CYCGRG 1 cut(s) 821
AvaII GGWCC 1 cut(s) 1335
BaeGI GKGCMC 1 cut(s) 1390
BanII GRGCYC 3 cut(s) 81, 1003, 1612
BauI CACGAG 2 cut(s) 491, 1410
BbsI GAAGAC 1 cut(s) 750
Bbv12I GWGCWC 6 cut(s) 1003, 1402, 1567, 1612, 1670, 1760
BbvI GCAGC 9 cut(s) 15, 126, 205, 449, 641, 750, 822, 2530, 2715
BccI CCATC 9 cut(s) 329, 733, 1169, 1322, 1453, 1808, 1912, 1976, 2171
BcgI CGANNNNNNTGC 2 cut(s) 858, 892
BciT130I CCWGG 2 cut(s) 2200, 2334
BciVI GTATCC 2 cut(s) 1093, 1341
BcoDI GTCTC 3 cut(s) 281, 298, 2138
BcuI ACTAGT 1 cut(s) 449
BfaI CTAG 7 cut(s) 15, 450, 767, 1026, 1481, 1569, 1790
BfmI CTRYAG 7 cut(s) 142, 675, 1004, 1730, 1761, 2275, 2523
BfuAI ACCTGC 1 cut(s) 431
BfuI GTATCC 2 cut(s) 1093, 1341
BlpI GCTNAGC 1 cut(s) 1723
BmcAI AGTACT 1 cut(s) 2614
Bme1390I CCNGG 2 cut(s) 2200, 2334
Bme18I GGWCC 1 cut(s) 1335
BmeT110I CYCGRG 1 cut(s) 821
BmgBI CACGTC 1 cut(s) 1255
BmgT120I GGNCC 2 cut(s) 105, 1335
BmiI GGNNCC 4 cut(s) 107, 660, 1337, 2256
BmrFI CCNGG 2 cut(s) 2200, 2334
BmtI GCTAGC 1 cut(s) 770
BpiI GAAGAC 1 cut(s) 750
BpmI CTGGAG 2 cut(s) 1499, 1761
Bpu10I CCTNAGC 2 cut(s) 951, 2465
Bpu1102I GCTNAGC 1 cut(s) 1723
BpuEI CTTGAG 1 cut(s) 1348
BsaAI YACGTR 1 cut(s) 1658
BsaBI GATNNNNATC 1 cut(s) 2493
BsaHI GRCGYC 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 2138
BsaJI CCNNGG 4 cut(s) 822, 1382, 1797, 2199
BsaWI WCCGGW 2 cut(s) 2147, 2640
BsaXI ACNNNNNCTCC 6 cut(s) 2287, 2304, 2317, 2334, 2403, 2433
Bsc4I CCNNNNNNNGG 5 cut(s) 20, 1344, 2033, 2264, 2514
Bse118I RCCGGY 1 cut(s) 2507
Bse1I ACTGG 4 cut(s) 107, 312, 1516, 1849
Bse3DI GCAATG 3 cut(s) 886, 1690, 1782
Bse8I GATNNNNATC 1 cut(s) 2493
BseAI TCCGGA 1 cut(s) 2640
BseBI CCWGG 2 cut(s) 2200, 2334
BseDI CCNNGG 4 cut(s) 822, 1382, 1797, 2199
BseJI GATNNNNATC 1 cut(s) 2493
BseLI CCNNNNNNNGG 5 cut(s) 20, 1344, 2033, 2264, 2514
BseMI GCAATG 3 cut(s) 886, 1690, 1782
BseNI ACTGG 4 cut(s) 107, 312, 1516, 1849
BseRI GAGGAG 1 cut(s) 146
BseSI GKGCMC 1 cut(s) 1390
BseXI GCAGC 9 cut(s) 15, 126, 205, 449, 641, 750, 822, 2530, 2715
BsgI GTGCAG 1 cut(s) 14
Bsh1236I CGCG 1 cut(s) 112
BshFI GGCC 5 cut(s) 106, 182, 523, 1986, 2337
BsiHKAI GWGCWC 6 cut(s) 1003, 1402, 1567, 1612, 1670, 1760
BsiHKCI CYCGRG 1 cut(s) 821
BsiSI CCGG 5 cut(s) 213, 1987, 2148, 2508, 2641
BslFI GGGAC 3 cut(s) 136, 2358, 2466
BslI CCNNNNNNNGG 5 cut(s) 20, 1344, 2033, 2264, 2514
BsmAI GTCTC 3 cut(s) 281, 298, 2138
BsmFI GGGAC 3 cut(s) 136, 2358, 2466
BsmI GAATGC 2 cut(s) 1599, 2509
BsnI GGCC 5 cut(s) 106, 182, 523, 1986, 2337
Bso31I GGTCTC 1 cut(s) 2138
BsoBI CYCGRG 1 cut(s) 821
Bsp1286I GDGCHC 8 cut(s) 81, 1003, 1390, 1402, 1567, 1612, 1670, 1760
Bsp13I TCCGGA 1 cut(s) 2640
Bsp143I GATC 4 cut(s) 487, 1847, 2494, 2645
Bsp1720I GCTNAGC 1 cut(s) 1723
BspACI CCGC 9 cut(s) 110, 210, 221, 224, 1333, 1823, 1935, 2003, 2470
BspANI GGCC 5 cut(s) 106, 182, 523, 1986, 2337
BspEI TCCGGA 1 cut(s) 2640
BspFNI CGCG 1 cut(s) 112
BspLI GGNNCC 4 cut(s) 107, 660, 1337, 2256
BspMAI CTGCAG 2 cut(s) 146, 1008
BspMI ACCTGC 1 cut(s) 431
BspOI GCTAGC 1 cut(s) 770
BspPI GGATC 2 cut(s) 1855, 2489
BspQI GCTCTTC 2 cut(s) 1696, 2693
BspTNI GGTCTC 1 cut(s) 2138
BsrBI CCGCTC 1 cut(s) 1935
BsrDI GCAATG 3 cut(s) 886, 1690, 1782
BsrFI RCCGGY 1 cut(s) 2507
BsrI ACTGG 4 cut(s) 107, 312, 1516, 1849
BssAI RCCGGY 1 cut(s) 2507
BssECI CCNNGG 4 cut(s) 822, 1382, 1797, 2199
BssMI GATC 4 cut(s) 487, 1847, 2494, 2645
BssNI GRCGYC 1 cut(s) 207
BssSI CACGAG 2 cut(s) 491, 1410
BssT1I CCWWGG 1 cut(s) 1382
Bst2BI CACGAG 2 cut(s) 491, 1410
Bst2UI CCWGG 2 cut(s) 2200, 2334
Bst4CI ACNGT 7 cut(s) 328, 390, 596, 1126, 1425, 2010, 2263
Bst6I CTCTTC 4 cut(s) 1570, 1696, 2136, 2693
BstACI GRCGYC 1 cut(s) 207
BstAPI GCANNNNNTGC 1 cut(s) 2396
BstBAI YACGTR 1 cut(s) 1658
BstC8I GCNNGC 8 cut(s) 26, 768, 772, 840, 1114, 1298, 1599, 2382
BstFNI CGCG 1 cut(s) 112
BstHHI GCGC 4 cut(s) 38, 114, 1296, 1302
BstKTI GATC 4 cut(s) 490, 1850, 2497, 2648
BstMAI GTCTC 3 cut(s) 281, 298, 2138
BstMBI GATC 4 cut(s) 487, 1847, 2494, 2645
BstNI CCWGG 2 cut(s) 2200, 2334
BstSCI CCNGG 2 cut(s) 2198, 2332
BstSFI CTRYAG 7 cut(s) 142, 675, 1004, 1730, 1761, 2275, 2523
BstSLI GKGCMC 1 cut(s) 1390
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 9 cut(s) 15, 126, 205, 449, 641, 750, 822, 2530, 2715
BstV2I GAAGAC 1 cut(s) 750
BstX2I RGATCY 2 cut(s) 1847, 2494
BstYI RGATCY 2 cut(s) 1847, 2494
BsuI GTATCC 2 cut(s) 1093, 1341
BsuRI GGCC 5 cut(s) 106, 182, 523, 1986, 2337
BtrI CACGTC 1 cut(s) 1255
BtsI GCAGTG 3 cut(s) 25, 31, 1123
BtsIMutI CAGTG 5 cut(s) 25, 31, 319, 1123, 2057
BveI ACCTGC 1 cut(s) 431
Cac8I GCNNGC 8 cut(s) 26, 768, 772, 840, 1114, 1298, 1599, 2382
CaiI CAGNNNCTG 2 cut(s) 632, 2498
CfoI GCGC 4 cut(s) 38, 114, 1296, 1302
Cfr10I RCCGGY 1 cut(s) 2507
Cfr13I GGNCC 2 cut(s) 105, 1335
CseI GACGC 2 cut(s) 215, 518
Csp6I GTAC 5 cut(s) 866, 1127, 1519, 2543, 2613
CviAII CATG 6 cut(s) 557, 965, 1391, 1536, 1589, 1898
CviQI GTAC 5 cut(s) 866, 1127, 1519, 2543, 2613
DpnI GATC 4 cut(s) 489, 1849, 2496, 2647
DpnII GATC 4 cut(s) 487, 1847, 2494, 2645
DraIII CACNNNGTG 1 cut(s) 1448
EaeI YGGCCR 2 cut(s) 1984, 2335
Eam1104I CTCTTC 4 cut(s) 1570, 1696, 2136, 2693
EarI CTCTTC 4 cut(s) 1570, 1696, 2136, 2693
EciI GGCGGA 1 cut(s) 1348
Ecl136II GAGCTC 2 cut(s) 1001, 1610
Eco130I CCWWGG 1 cut(s) 1382
Eco147I AGGCCT 2 cut(s) 182, 523
Eco24I GRGCYC 3 cut(s) 81, 1003, 1612
Eco31I GGTCTC 1 cut(s) 2138
Eco32I GATATC 1 cut(s) 2272
Eco47I GGWCC 1 cut(s) 1335
Eco53kI GAGCTC 2 cut(s) 1001, 1610
Eco57I CTGAAG 2 cut(s) 1872, 2016
Eco88I CYCGRG 1 cut(s) 821
EcoICRI GAGCTC 2 cut(s) 1001, 1610
EcoRII CCWGG 2 cut(s) 2198, 2332
EcoRV GATATC 1 cut(s) 2272
EcoT14I CCWWGG 1 cut(s) 1382
EcoT22I ATGCAT 1 cut(s) 1861
EcoT38I GRGCYC 3 cut(s) 81, 1003, 1612
ErhI CCWWGG 1 cut(s) 1382
FaeI CATG 6 cut(s) 560, 968, 1394, 1539, 1592, 1901
FalI AAGNNNNNCTT 2 cut(s) 2081, 2113
FaqI GGGAC 3 cut(s) 136, 2358, 2466
FatI CATG 6 cut(s) 556, 964, 1390, 1535, 1588, 1897
FauI CCCGC 2 cut(s) 117, 1928
FauNDI CATATG 1 cut(s) 2308
FblI GTMKAC 1 cut(s) 1251
FriOI GRGCYC 3 cut(s) 81, 1003, 1612
FspBI CTAG 7 cut(s) 15, 450, 767, 1026, 1481, 1569, 1790
FspI TGCGCA 1 cut(s) 1295
GlaI GCGC 4 cut(s) 37, 113, 1295, 1301
GsuI CTGGAG 2 cut(s) 1499, 1761
HaeIII GGCC 5 cut(s) 106, 182, 523, 1986, 2337
HapII CCGG 5 cut(s) 213, 1987, 2148, 2508, 2641
HgaI GACGC 2 cut(s) 215, 518
HhaI GCGC 4 cut(s) 38, 114, 1296, 1302
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 6 cut(s) 560, 968, 1394, 1539, 1592, 1901
Hin6I GCGC 4 cut(s) 36, 112, 1294, 1300
HinP1I GCGC 4 cut(s) 36, 112, 1294, 1300
HinfI GANTC 9 cut(s) 172, 611, 721, 746, 1021, 1228, 1506, 2062, 2531
HpaII CCGG 5 cut(s) 213, 1987, 2148, 2508, 2641
HphI GGTGA 9 cut(s) 278, 995, 1190, 1205, 1460, 1942, 2279, 2540, 2580
Hpy166II GTNNAC 7 cut(s) 352, 386, 1201, 1252, 1373, 1521, 2095
Hpy8I GTNNAC 7 cut(s) 352, 386, 1201, 1252, 1373, 1521, 2095
Hpy99I CGWCG 1 cut(s) 209
HpyCH4III ACNGT 7 cut(s) 328, 390, 596, 1126, 1425, 2010, 2263
HpyCH4IV ACGT 3 cut(s) 1254, 1351, 1657
HpySE526I ACGT 3 cut(s) 1254, 1351, 1657
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 6 cut(s) 560, 968, 1394, 1539, 1592, 1901
HspAI GCGC 4 cut(s) 36, 112, 1294, 1300
Kpn2I TCCGGA 1 cut(s) 2640
Kzo9I GATC 4 cut(s) 487, 1847, 2494, 2645
LguI GCTCTTC 2 cut(s) 1696, 2693
LmnI GCTCC 6 cut(s) 215, 424, 1562, 2024, 2308, 2625
Lsp1109I GCAGC 9 cut(s) 15, 126, 205, 449, 641, 750, 822, 2530, 2715
MaeI CTAG 7 cut(s) 15, 450, 767, 1026, 1481, 1569, 1790
MaeII ACGT 3 cut(s) 1254, 1351, 1657
MaeIII GTNAC 8 cut(s) 232, 322, 328, 622, 1276, 1438, 1903, 2528
MalI GATC 4 cut(s) 489, 1849, 2496, 2647
MbiI CCGCTC 1 cut(s) 1935
MboI GATC 4 cut(s) 487, 1847, 2494, 2645
MfeI CAATTG 1 cut(s) 2160
MflI RGATCY 2 cut(s) 1847, 2494
MhlI GDGCHC 8 cut(s) 81, 1003, 1390, 1402, 1567, 1612, 1670, 1760
MlyI GAGTC 3 cut(s) 740, 1222, 2525
MmeI TCCRAC 7 cut(s) 425, 557, 735, 749, 1531, 1747, 2282
Mph1103I ATGCAT 1 cut(s) 1861
MroI TCCGGA 1 cut(s) 2640
MroXI GAANNNNTTC 3 cut(s) 548, 1505, 2041
MseI TTAA 9 cut(s) 900, 936, 1064, 1359, 2099, 2292, 2366, 2403, 2427
MslI CAYNNNNRTG 5 cut(s) 359, 361, 1395, 1708, 2358
MspA1I CMGCKG 1 cut(s) 632
MspI CCGG 5 cut(s) 213, 1987, 2148, 2508, 2641
MspR9I CCNGG 2 cut(s) 2200, 2334
MunI CAATTG 1 cut(s) 2160
Mva1269I GAATGC 2 cut(s) 1599, 2509
MvaI CCWGG 2 cut(s) 2200, 2334
MvnI CGCG 1 cut(s) 112
NdeI CATATG 1 cut(s) 2308
NdeII GATC 4 cut(s) 487, 1847, 2494, 2645
NheI GCTAGC 1 cut(s) 766
NlaIII CATG 6 cut(s) 560, 968, 1394, 1539, 1592, 1901
NlaIV GGNNCC 4 cut(s) 107, 660, 1337, 2256
NmeAIII GCCGAG 2 cut(s) 2363, 2498
NmuCI GTSAC 4 cut(s) 232, 328, 622, 2528
NsbI TGCGCA 1 cut(s) 1295
NsiI ATGCAT 1 cut(s) 1861
OliI CACNNNNGTG 1 cut(s) 359
PceI AGGCCT 2 cut(s) 182, 523
PciSI GCTCTTC 2 cut(s) 1696, 2693
PctI GAATGC 2 cut(s) 1599, 2509
PdmI GAANNNNTTC 3 cut(s) 548, 1505, 2041
PfeI GAWTC 6 cut(s) 172, 611, 721, 1021, 1506, 2062
PflMI CCANNNNNTGG 1 cut(s) 2264
PleI GAGTC 3 cut(s) 740, 1222, 2525
PpsI GAGTC 3 cut(s) 740, 1222, 2525
Ppu21I YACGTR 1 cut(s) 1658
Psp124BI GAGCTC 2 cut(s) 1003, 1612
Psp6I CCWGG 2 cut(s) 2198, 2332
PspGI CCWGG 2 cut(s) 2198, 2332
PspN4I GGNNCC 4 cut(s) 107, 660, 1337, 2256
PspPI GGNCC 2 cut(s) 105, 1335
PstI CTGCAG 2 cut(s) 146, 1008
PstNI CAGNNNCTG 2 cut(s) 632, 2498
PsuI RGATCY 2 cut(s) 1847, 2494
PvuII CAGCTG 1 cut(s) 632
RsaI GTAC 5 cut(s) 867, 1128, 1520, 2544, 2614
RsaNI GTAC 5 cut(s) 866, 1127, 1519, 2543, 2613
RseI CAYNNNNRTG 5 cut(s) 359, 361, 1395, 1708, 2358
SacI GAGCTC 2 cut(s) 1003, 1612
SapI GCTCTTC 2 cut(s) 1696, 2693
SaqAI TTAA 9 cut(s) 900, 936, 1064, 1359, 2099, 2292, 2366, 2403, 2427
Sau3AI GATC 4 cut(s) 487, 1847, 2494, 2645
Sau96I GGNCC 2 cut(s) 105, 1335
ScaI AGTACT 1 cut(s) 2614
SchI GAGTC 3 cut(s) 740, 1222, 2525
ScrFI CCNGG 2 cut(s) 2200, 2334
SduI GDGCHC 8 cut(s) 81, 1003, 1390, 1402, 1567, 1612, 1670, 1760
SfcI CTRYAG 7 cut(s) 142, 675, 1004, 1730, 1761, 2275, 2523
SinI GGWCC 1 cut(s) 1335
SmiMI CAYNNNNRTG 5 cut(s) 359, 361, 1395, 1708, 2358
SmlI CTYRAG 1 cut(s) 1363
SmoI CTYRAG 1 cut(s) 1363
SpeI ACTAGT 1 cut(s) 449
SseBI AGGCCT 2 cut(s) 182, 523
SsiI CCGC 9 cut(s) 110, 210, 221, 224, 1333, 1823, 1935, 2003, 2470
SspI AATATT 2 cut(s) 789, 1623
SspMI CTAG 7 cut(s) 15, 450, 767, 1026, 1481, 1569, 1790
SstI GAGCTC 2 cut(s) 1003, 1612
StuI AGGCCT 2 cut(s) 182, 523
StyD4I CCNGG 2 cut(s) 2198, 2332
StyI CCWWGG 1 cut(s) 1382
TaaI ACNGT 7 cut(s) 328, 390, 596, 1126, 1425, 2010, 2263
TaiI ACGT 3 cut(s) 1257, 1354, 1660
TaqI TCGA 3 cut(s) 1226, 1491, 2210
TaqII GACCGA 1 cut(s) 218
TatI WGTACW 2 cut(s) 1518, 2612
TauI GCSGC 3 cut(s) 212, 224, 2472
TfiI GAWTC 6 cut(s) 172, 611, 721, 1021, 1506, 2062
Tru1I TTAA 9 cut(s) 900, 936, 1064, 1359, 2099, 2292, 2366, 2403, 2427
Tru9I TTAA 9 cut(s) 900, 936, 1064, 1359, 2099, 2292, 2366, 2403, 2427
TscAI CASTG 5 cut(s) 25, 38, 319, 1123, 2064
TseFI GTSAC 4 cut(s) 232, 328, 622, 2528
TseI GCWGC 9 cut(s) 28, 114, 218, 437, 629, 763, 835, 2518, 2703
Tsp45I GTSAC 4 cut(s) 232, 328, 622, 2528
TspGWI ACGGA 4 cut(s) 238, 400, 1234, 1570
TspRI CASTG 5 cut(s) 25, 38, 319, 1123, 2064
Van91I CCANNNNNTGG 1 cut(s) 2264
VpaK11BI GGWCC 1 cut(s) 1335
XapI RAATTY 3 cut(s) 710, 1286, 1802
XbaI TCTAGA 1 cut(s) 1789
XmiI GTMKAC 1 cut(s) 1251
XmnI GAANNNNTTC 3 cut(s) 548, 1505, 2041
XspI CTAG 7 cut(s) 15, 450, 767, 1026, 1481, 1569, 1790
ZrmI AGTACT 1 cut(s) 2614
Zsp2I ATGCAT 1 cut(s) 1861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.