Rh1CG091500

polyribonucleotide nucleotidyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0009860
Physical Location & Seq
Forward (+)
19521923 .. 19542804
20882 bp
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UTR
Exon/CDS
Intron
Rh1CG091500.1

Sequence Viewer

Length: 420 bp
ATGAAGATTAATCGCAAGGCATTTGGCATCAGAGTTTTGACCGACGCCAGAGCTGCTGCGGCGGTTGATGTTACTCAGCCTTATTCCGTCAAAATCCCCGTTGGTGATAGGCACATTTTGATTGAGACAGGTCATATTGGGAGACAAGCCAGTGGTTCTCTTACCGTCATAGATGGAGAAACTATTGTTTACACATCTGTTTGTTTGGCTGATGCTCCAAGTGAACCGTCAGACTTTTTCCCTCTTTCAGTTCATTATCAGGAGTGTTTTTTGGCAGCAGGTTGGACTAGTGGAGGTTTTTTCAAACGAGAAGGAAGGCCAAAAGATCACGAGGGCAATAATGAACTCTACCAACTTCTACCGAAAAAGATAGCATTCGGACTACCAACGGACAAGGAGCATATATTCAGATTGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0004654 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006139 GO:0006396 GO:0006401 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008299 GO:0008408 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010322 GO:0010323 GO:0010467 GO:0010563 GO:0010565 GO:0010675 GO:0010677 GO:0015994 GO:0015995 GO:0016036 GO:0016070 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016119 GO:0016120 GO:0016122 GO:0016123 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0018130 GO:0019216 GO:0019220 GO:0019222 GO:0019438 GO:0019439 GO:0019747 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031425 GO:0031667 GO:0031668 GO:0031669 GO:0033013 GO:0033014 GO:0033554 GO:0034641 GO:0034655 GO:0042214 GO:0042440 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045827 GO:0045833 GO:0045912 GO:0045936 GO:0046148 GO:0046246 GO:0046483 GO:0046700 GO:0046890 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051174 GO:0051186 GO:0051188 GO:0051716 GO:0062012 GO:0062014 GO:0065007 GO:0071071 GO:0071072 GO:0071496 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1903725 GO:1903726
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko03018 map00230 map00240 map03018
Pfam Domains
Protein Families
KH_1 PNPase RNase_PH RNase_PH_C S1

Protein Analysis

139

Amino Acids

15.36

Weight (kDa)

6.51

Isoelectric Point (pI)

40.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 37 - 120 1e-09 3' exoribonuclease family, domain 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 269
AciI CCGC 2 cut(s) 59, 62
AcyI GRCGYC 1 cut(s) 45
AgsI TTSAA 1 cut(s) 304
AhlI ACTAGT 1 cut(s) 287
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw26I GTCTC 2 cut(s) 119, 136
AoxI GGCC 1 cut(s) 317
ApeKI GCWGC 3 cut(s) 53, 56, 275
AseI ATTAAT 1 cut(s) 9
AsuHPI GGTGA 1 cut(s) 116
BauI CACGAG 1 cut(s) 329
BbvI GCAGC 3 cut(s) 40, 43, 287
BccI CCATC 1 cut(s) 167
BcoDI GTCTC 2 cut(s) 119, 136
BcuI ACTAGT 1 cut(s) 287
BfaI CTAG 1 cut(s) 288
BfuAI ACCTGC 1 cut(s) 269
BisI GCNGC 4 cut(s) 54, 57, 60, 276
BlsI GCNGC 4 cut(s) 55, 58, 61, 277
BmsI GCATC 2 cut(s) 36, 202
BsaHI GRCGYC 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 150
BseMII CTCAG 1 cut(s) 89
BseNI ACTGG 1 cut(s) 150
BseXI GCAGC 3 cut(s) 40, 43, 287
BshFI GGCC 1 cut(s) 319
BsmAI GTCTC 2 cut(s) 119, 136
BsmI GAATGC 1 cut(s) 374
BsnI GGCC 1 cut(s) 319
Bsp143I GATC 1 cut(s) 325
BspACI CCGC 2 cut(s) 59, 62
BspANI GGCC 1 cut(s) 319
BspCNI CTCAG 1 cut(s) 88
BspMI ACCTGC 1 cut(s) 269
BsrI ACTGG 1 cut(s) 150
BssMI GATC 1 cut(s) 325
BssNI GRCGYC 1 cut(s) 45
BssSI CACGAG 1 cut(s) 329
Bst2BI CACGAG 1 cut(s) 329
Bst4CI ACNGT 2 cut(s) 166, 228
BstACI GRCGYC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 75
BstKTI GATC 1 cut(s) 328
BstMAI GTCTC 2 cut(s) 119, 136
BstMBI GATC 1 cut(s) 325
BstMWI GCNNNNNNNGC 2 cut(s) 53, 59
BstV1I GCAGC 3 cut(s) 40, 43, 287
BsuRI GGCC 1 cut(s) 319
BtsIMutI CAGTG 1 cut(s) 157
BveI ACCTGC 1 cut(s) 269
CseI GACGC 1 cut(s) 53
CviJI RGCY 5 cut(s) 53, 79, 149, 209, 319
CviKI_1 RGCY 5 cut(s) 53, 79, 149, 209, 319
DdeI CTNAG 1 cut(s) 75
DpnI GATC 1 cut(s) 327
DpnII GATC 1 cut(s) 325
FaiI YATR 4 cut(s) 135, 170, 402, 404
Fnu4HI GCNGC 4 cut(s) 54, 57, 60, 276
Fsp4HI GCNGC 4 cut(s) 54, 57, 60, 276
FspBI CTAG 1 cut(s) 288
GluI GCNGC 4 cut(s) 54, 57, 60, 276
HaeIII GGCC 1 cut(s) 319
HgaI GACGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 45
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 2 cut(s) 190, 224
Hpy188I TCNGA 4 cut(s) 32, 232, 380, 410
Hpy188III TCNNGA 2 cut(s) 260, 329
Hpy8I GTNNAC 2 cut(s) 190, 224
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 2 cut(s) 305, 309
HpyCH4III ACNGT 2 cut(s) 166, 228
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 59
HpyF3I CTNAG 1 cut(s) 75
Hsp92I GRCGYC 1 cut(s) 45
Kzo9I GATC 1 cut(s) 325
LmnI GCTCC 2 cut(s) 220, 397
LpnPI CCDG 5 cut(s) 61, 114, 163, 245, 264
Lsp1109I GCAGC 3 cut(s) 40, 43, 287
LweI GCATC 2 cut(s) 36, 202
MaeI CTAG 1 cut(s) 288
MaeIII GTNAC 1 cut(s) 70
MalI GATC 1 cut(s) 327
MboI GATC 1 cut(s) 325
MboII GAAGA 1 cut(s) 16
MmeI TCCRAC 1 cut(s) 263
MnlI CCTC 3 cut(s) 252, 287, 325
MseI TTAA 1 cut(s) 9
Mva1269I GAATGC 1 cut(s) 374
MwoI GCNNNNNNNGC 2 cut(s) 53, 59
NdeII GATC 1 cut(s) 325
PctI GAATGC 1 cut(s) 374
PkrI GCNGC 4 cut(s) 55, 58, 61, 277
PshBI ATTAAT 1 cut(s) 9
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 4 cut(s) 54, 57, 60, 276
Sau3AI GATC 1 cut(s) 325
SetI ASST 4 cut(s) 55, 133, 283, 298
SfaNI GCATC 2 cut(s) 36, 202
SpeI ACTAGT 1 cut(s) 287
SsiI CCGC 2 cut(s) 59, 62
SspMI CTAG 1 cut(s) 288
TaaI ACNGT 2 cut(s) 166, 228
TaqII GACCGA 1 cut(s) 56
TauI GCSGC 1 cut(s) 62
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TscAI CASTG 1 cut(s) 157
TseI GCWGC 3 cut(s) 53, 56, 275
TspDTI ATGAA 3 cut(s) 17, 242, 357
TspGWI ACGGA 2 cut(s) 76, 404
TspRI CASTG 1 cut(s) 157
VspI ATTAAT 1 cut(s) 9
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.