Rorug03G0279700

polyribonucleotide nucleotidyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0009860
Physical Location & Seq
Forward (+)
27749039 .. 27749341
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0279700.1

Sequence Viewer

Length: 303 bp
ATGGACGATCGATATCTTAGTGGATTTAAACTAGATGAAAATGTAGAACAAGGAACGCAGTATTTCTTTTATGAATTATTTGGCACTCTTGCAACATATCTAGACGTCTCTTTACAGGGAAAGTTGAAGCTTATGTATGCACCAAATGGTAGGGACTGGTCACTCTACTGCGATACACAGAAGAACCCATATGACATCTATGGAGCATGTGGGCCTTATGGGGTCTGCAATGTTTCTGAATCTCCAATCGGTAACTGTTTGAAAGGGTTTGTACCAAAGTTAGACCAGGAATGGAGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0004654 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006139 GO:0006396 GO:0006401 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008299 GO:0008408 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010322 GO:0010323 GO:0010467 GO:0010563 GO:0010565 GO:0010675 GO:0010677 GO:0015994 GO:0015995 GO:0016036 GO:0016070 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016119 GO:0016120 GO:0016122 GO:0016123 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0018130 GO:0019216 GO:0019220 GO:0019222 GO:0019438 GO:0019439 GO:0019747 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031425 GO:0031667 GO:0031668 GO:0031669 GO:0033013 GO:0033014 GO:0033554 GO:0034641 GO:0034655 GO:0042214 GO:0042440 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045827 GO:0045833 GO:0045912 GO:0045936 GO:0046148 GO:0046246 GO:0046483 GO:0046700 GO:0046890 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051174 GO:0051186 GO:0051188 GO:0051716 GO:0062012 GO:0062014 GO:0065007 GO:0071071 GO:0071072 GO:0071496 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1903725 GO:1903726
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko03018 map00230 map00240 map03018
Pfam Domains
Protein Families
KH_1 PNPase RNase_PH RNase_PH_C S1

Protein Analysis

100

Amino Acids

11.42

Weight (kDa)

4.59

Isoelectric Point (pI)

24.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 7 - 93 3.8e-15 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 108
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 1 cut(s) 273
AgsI TTSAA 2 cut(s) 127, 262
AjnI CCWGG 1 cut(s) 285
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
Alw26I GTCTC 1 cut(s) 112
AoxI GGCC 1 cut(s) 212
AspS9I GGNCC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 287
BcoDI GTCTC 1 cut(s) 112
BfaI CTAG 2 cut(s) 32, 101
Bme1390I CCNGG 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 212
BmrFI CCNGG 1 cut(s) 287
Bsa29I ATCGAT 1 cut(s) 10
BsaBI GATNNNNATC 1 cut(s) 12
BsaHI GRCGYC 1 cut(s) 105
Bse1I ACTGG 1 cut(s) 161
Bse3DI GCAATG 1 cut(s) 235
Bse8I GATNNNNATC 1 cut(s) 12
BseBI CCWGG 1 cut(s) 287
BseCI ATCGAT 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 12
BseMI GCAATG 1 cut(s) 235
BseNI ACTGG 1 cut(s) 161
Bsh1285I CGRYCG 1 cut(s) 10
BshFI GGCC 1 cut(s) 214
BshVI ATCGAT 1 cut(s) 10
BsiEI CGRYCG 1 cut(s) 10
BslFI GGGAC 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 112
BsmBI CGTCTC 1 cut(s) 112
BsmFI GGGAC 1 cut(s) 167
BsnI GGCC 1 cut(s) 214
Bsp143I GATC 1 cut(s) 7
BspANI GGCC 1 cut(s) 214
BspDI ATCGAT 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 235
BsrI ACTGG 1 cut(s) 161
BssMI GATC 1 cut(s) 7
BssNI GRCGYC 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 1 cut(s) 257
BstACI GRCGYC 1 cut(s) 105
BstDEI CTNAG 1 cut(s) 17
BstKTI GATC 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 1 cut(s) 7
BstMCI CGRYCG 1 cut(s) 10
BstNI CCWGG 1 cut(s) 287
BstNSI RCATGY 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 285
Bsu15I ATCGAT 1 cut(s) 10
BsuRI GGCC 1 cut(s) 214
BsuTUI ATCGAT 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 212
ClaI ATCGAT 1 cut(s) 10
Csp6I GTAC 1 cut(s) 272
CviAII CATG 1 cut(s) 207
CviJI RGCY 2 cut(s) 130, 214
CviKI_1 RGCY 2 cut(s) 130, 214
CviQI GTAC 1 cut(s) 272
DdeI CTNAG 1 cut(s) 17
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
DraI TTTAAA 1 cut(s) 28
Eco32I GATATC 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 285
EcoRV GATATC 1 cut(s) 14
Esp3I CGTCTC 1 cut(s) 112
FaeI CATG 1 cut(s) 210
FaiI YATR 9 cut(s) 72, 97, 134, 138, 190, 192, 201, 208, 219
FaqI GGGAC 1 cut(s) 167
FatI CATG 1 cut(s) 206
FauNDI CATATG 1 cut(s) 190
FspBI CTAG 2 cut(s) 32, 101
HaeIII GGCC 1 cut(s) 214
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 1 cut(s) 210
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 1 cut(s) 239
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 1 cut(s) 101
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 3 cut(s) 92, 140, 228
HpyF3I CTNAG 1 cut(s) 17
HpySE526I ACGT 1 cut(s) 105
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 1 cut(s) 210
Kzo9I GATC 1 cut(s) 7
LmnI GCTCC 2 cut(s) 203, 294
LpnPI CCDG 4 cut(s) 101, 142, 272, 299
MaeI CTAG 2 cut(s) 32, 101
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 2 cut(s) 159, 251
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 1 cut(s) 193
MluCI AATT 1 cut(s) 74
MseI TTAA 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 287
MvaI CCWGG 1 cut(s) 287
NdeI CATATG 1 cut(s) 190
NdeII GATC 1 cut(s) 7
NlaIII CATG 1 cut(s) 210
NmuCI GTSAC 1 cut(s) 159
NspI RCATGY 1 cut(s) 210
PfeI GAWTC 1 cut(s) 239
Ple19I CGATCG 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 285
PspGI CCWGG 1 cut(s) 285
PspPI GGNCC 1 cut(s) 212
PvuI CGATCG 1 cut(s) 10
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
SaqAI TTAA 1 cut(s) 27
Sau3AI GATC 1 cut(s) 7
Sau96I GGNCC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 287
SetI ASST 2 cut(s) 108, 132
SgeI CNNG 9 cut(s) 44, 62, 101, 113, 128, 169, 219, 298, 299
Sse9I AATT 1 cut(s) 74
SspMI CTAG 2 cut(s) 32, 101
StyD4I CCNGG 1 cut(s) 285
TaaI ACNGT 1 cut(s) 257
TaiI ACGT 1 cut(s) 108
TaqI TCGA 1 cut(s) 10
TasI AATT 1 cut(s) 74
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TseFI GTSAC 1 cut(s) 159
Tsp45I GTSAC 1 cut(s) 159
TspDTI ATGAA 2 cut(s) 51, 87
XbaI TCTAGA 1 cut(s) 100
XceI RCATGY 1 cut(s) 210
XspI CTAG 2 cut(s) 32, 101
ZraI GACGTC 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.