AT3G03870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009971
Physical Location & Seq
Forward (+)
995062 .. 997410
2349 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G03870.2

Sequence Viewer

Length: 705 bp
ATGGATCTCGAGGATTGGGAATTAGTACTCCCCAAGAACAGCTTCAAGGATCTTGATCTTGATCATGACGAGGATCATCATGGAGCCATGGTGATGGACTACTTCCTCTGCCCATCTACTAAAGATCCTCTCCCCAAGACAGAGTCTCCTCCAAGATCCAAAGTGGTCCCTAAAAAGATTCTTCAAGTTCCCATAGCTTGGGAAGCCGTGTTGGATCAAGACAACACGAAGATACCCAATAACCCTGATCTTGAACCGGATCCGCATCCGGATCCGGATTCAAAACCGACCCTTTCGACGGACTCTGTTTCGTCACCAAGAGTTTCCTTCAAGATCATGAAGGACACTGAATTTGCCGACATGAAAATTGACCCACCAGCGAGGATCACGAGTCCTCTGCCTCAGATCGATGATGCTGCTTCGAAACCCTCTGATTTAGAAGGAGGGGATGACTTGCGAGACAAGAAAGAAGTTGTTTTGGAGGAAGAAGATGAAGATGGTAGTGGTGGTGAGAGATTGAATCTGTGGAAGGCTGGTCTCAATGGGATTGGAGCAATCTGTTCTTTTGGGGTTGCAGCTGCTGCTGCTACCGTATGTGTCTTCTTCCTCGGACACAACAATATCAAAATCTGTAAGAACAAGAACCAGATGCTTCGGTTCCAGATTTACTCCGATGATAATAAGGTAATGTTCTTAATTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

234

Amino Acids

25.97

Weight (kDa)

4.6

Isoelectric Point (pI)

38.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6821 PF20705 107 - 266 4.7e-43 Family of unknown function (DUF6821)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009971)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03870 AT3G03870 AT5G18130 AT5G18130
fragaria_vesca FvH4_1g28230
malus_domestica MD12G1005100.v1.1 MD14G1003600.v1.1
prunus_persica Prupe.7G006100_v2.0.a1 Prupe.7G006100_v2.0.a1
pyrus_communis pycom12g00420 pycom14g00160
rosa_chinensis RchiOBHm_Chr3g0497011
rosa_laevigata RLG00000022489
rosa_multiflora Rmu_sc0000438.1_g000011
rosa_roxburghii Rroxscaffold_6G00388520
rosa_rugosa Rorug03G0288900
rosa_samantha Rh3AG333100 Rh3BG370400 Rh3CG367300 Rh3DG368600
rosa_wichuraiana Rw3G029280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 198
AccIII TCCGGA 2 cut(s) 268, 274
AciI CCGC 1 cut(s) 263
AcsI RAATTY 1 cut(s) 350
AfaI GTAC 1 cut(s) 27
AfiI CCNNNNNNNGG 2 cut(s) 198, 298
AgsI TTSAA 6 cut(s) 46, 185, 254, 282, 331, 520
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
AluBI AGCT 3 cut(s) 42, 197, 578
AluI AGCT 3 cut(s) 42, 197, 578
Alw26I GTCTC 3 cut(s) 150, 453, 542
AlwNI CAGNNNCTG 1 cut(s) 581
Ama87I CYCGRG 1 cut(s) 8
Aor13HI TCCGGA 2 cut(s) 268, 274
ApeKI GCWGC 5 cut(s) 416, 575, 578, 581, 584
ApoI RAATTY 1 cut(s) 350
ArsI GACNNNNNNTTYG 2 cut(s) 335, 367
Asp700I GAANNNNTTC 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 166
AsuHPI GGTGA 3 cut(s) 103, 306, 521
AsuII TTCGAA 1 cut(s) 422
AvaI CYCGRG 1 cut(s) 8
AvaII GGWCC 1 cut(s) 166
BamHI GGATCC 2 cut(s) 259, 271
BauI CACGAG 1 cut(s) 388
BbsI GAAGAC 1 cut(s) 592
BbvI GCAGC 5 cut(s) 403, 565, 568, 571, 587
BccI CCATC 3 cut(s) 88, 121, 491
BceAI ACGGC 1 cut(s) 191
BcgI CGANNNNNNTGC 4 cut(s) 379, 398, 413, 432
BclI TGATCA 1 cut(s) 61
BcoDI GTCTC 3 cut(s) 150, 453, 542
BisI GCNGC 5 cut(s) 417, 576, 579, 582, 585
BlsI GCNGC 5 cut(s) 418, 577, 580, 583, 586
BmcAI AGTACT 1 cut(s) 27
Bme18I GGWCC 1 cut(s) 166
BmeT110I CYCGRG 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 5 cut(s) 85, 168, 261, 273, 659
BmsI GCATC 3 cut(s) 274, 403, 639
BpiI GAAGAC 1 cut(s) 592
Bpu14I TTCGAA 1 cut(s) 422
Bsa29I ATCGAT 1 cut(s) 408
BsaBI GATNNNNATC 3 cut(s) 54, 60, 264
BsaI GGTCTC 1 cut(s) 542
BsaJI CCNNGG 2 cut(s) 87, 607
BsaWI WCCGGW 3 cut(s) 256, 268, 274
BsaXI ACNNNNNCTCC 4 cut(s) 75, 105, 130, 160
Bsc4I CCNNNNNNNGG 2 cut(s) 198, 298
Bse8I GATNNNNATC 3 cut(s) 54, 60, 264
BseAI TCCGGA 2 cut(s) 268, 274
BseCI ATCGAT 1 cut(s) 408
BseDI CCNNGG 2 cut(s) 87, 607
BseGI GGATG 2 cut(s) 265, 454
BseJI GATNNNNATC 3 cut(s) 54, 60, 264
BseLI CCNNNNNNNGG 2 cut(s) 198, 298
BseMII CTCAG 1 cut(s) 416
BseRI GAGGAG 1 cut(s) 138
BseXI GCAGC 5 cut(s) 403, 565, 568, 571, 587
BshVI ATCGAT 1 cut(s) 408
BsiHKCI CYCGRG 1 cut(s) 8
BsiSI CCGG 3 cut(s) 257, 269, 275
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 2 cut(s) 198, 298
BsmAI GTCTC 3 cut(s) 150, 453, 542
BsmFI GGGAC 1 cut(s) 152
Bso31I GGTCTC 1 cut(s) 542
BsoBI CYCGRG 1 cut(s) 8
Bsp119I TTCGAA 1 cut(s) 422
Bsp13I TCCGGA 2 cut(s) 268, 274
Bsp19I CCATGG 1 cut(s) 87
BspACI CCGC 1 cut(s) 263
BspCNI CTCAG 1 cut(s) 415
BspDI ATCGAT 1 cut(s) 408
BspEI TCCGGA 2 cut(s) 268, 274
BspHI TCATGA 2 cut(s) 64, 336
BspLI GGNNCC 5 cut(s) 85, 168, 261, 273, 659
BspT104I TTCGAA 1 cut(s) 422
BspTNI GGTCTC 1 cut(s) 542
BssECI CCNNGG 2 cut(s) 87, 607
BssSI CACGAG 1 cut(s) 388
BssT1I CCWWGG 1 cut(s) 87
Bst2BI CACGAG 1 cut(s) 388
Bst4CI ACNGT 1 cut(s) 592
BstAPI GCANNNNNTGC 1 cut(s) 581
BstBI TTCGAA 1 cut(s) 422
BstDEI CTNAG 1 cut(s) 402
BstDSI CCRYGG 1 cut(s) 87
BstF5I GGATG 2 cut(s) 265, 454
BstMAI GTCTC 3 cut(s) 150, 453, 542
BstMWI GCNNNNNNNGC 3 cut(s) 203, 581, 584
BstV1I GCAGC 5 cut(s) 403, 565, 568, 571, 587
BstV2I GAAGAC 1 cut(s) 592
BstX2I RGATCY 6 cut(s) 4, 49, 124, 155, 259, 271
BstXI CCANNNNNNTGG 1 cut(s) 94
BstYI RGATCY 6 cut(s) 4, 49, 124, 155, 259, 271
Bsu15I ATCGAT 1 cut(s) 408
BsuTUI ATCGAT 1 cut(s) 408
BtgI CCRYGG 1 cut(s) 87
BtsCI GGATG 2 cut(s) 265, 454
BtsIMutI CAGTG 1 cut(s) 345
CaiI CAGNNNCTG 1 cut(s) 581
CciI TCATGA 2 cut(s) 64, 336
Cfr13I GGNCC 1 cut(s) 166
ClaI ATCGAT 1 cut(s) 408
Csp6I GTAC 1 cut(s) 26
CviAII CATG 5 cut(s) 65, 80, 88, 337, 361
CviJI RGCY 6 cut(s) 42, 86, 197, 206, 533, 578
CviKI_1 RGCY 6 cut(s) 42, 86, 197, 206, 533, 578
CviQI GTAC 1 cut(s) 26
DdeI CTNAG 1 cut(s) 402
Eco130I CCWWGG 1 cut(s) 87
Eco31I GGTCTC 1 cut(s) 542
Eco47I GGWCC 1 cut(s) 166
Eco88I CYCGRG 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 5 cut(s) 68, 83, 91, 340, 364
FaiI YATR 7 cut(s) 66, 81, 89, 194, 338, 362, 595
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FaqI GGGAC 1 cut(s) 152
FatI CATG 5 cut(s) 64, 79, 87, 336, 360
FbaI TGATCA 1 cut(s) 61
Fnu4HI GCNGC 5 cut(s) 417, 576, 579, 582, 585
FokI GGATG 2 cut(s) 252, 461
Fsp4HI GCNGC 5 cut(s) 417, 576, 579, 582, 585
GluI GCNGC 5 cut(s) 417, 576, 579, 582, 585
HapII CCGG 3 cut(s) 257, 269, 275
Hin1II CATG 5 cut(s) 68, 83, 91, 340, 364
HinfI GANTC 6 cut(s) 143, 178, 278, 302, 391, 520
HpaII CCGG 3 cut(s) 257, 269, 275
HphI GGTGA 3 cut(s) 103, 306, 521
Hpy188I TCNGA 4 cut(s) 405, 433, 611, 673
Hpy99I CGWCG 1 cut(s) 301
HpyAV CCTTC 4 cut(s) 334, 337, 434, 523
HpyCH4III ACNGT 1 cut(s) 592
HpyCH4V TGCA 1 cut(s) 575
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 581, 584
HpyF3I CTNAG 1 cut(s) 402
Hsp92II CATG 5 cut(s) 68, 83, 91, 340, 364
Kpn2I TCCGGA 2 cut(s) 268, 274
Ksp22I TGATCA 1 cut(s) 61
LmnI GCTCC 2 cut(s) 83, 551
LpnPI CCDG 8 cut(s) 258, 270, 282, 288, 390, 519, 659, 674
Lsp1109I GCAGC 5 cut(s) 403, 565, 568, 571, 587
LweI GCATC 3 cut(s) 274, 403, 639
MaeIII GTNAC 1 cut(s) 312
MboII GAAGA 7 cut(s) 173, 241, 497, 500, 506, 592, 595
MflI RGATCY 6 cut(s) 4, 49, 124, 155, 259, 271
MluCI AATT 4 cut(s) 20, 350, 366, 696
MlyI GAGTC 3 cut(s) 152, 296, 400
MmeI TCCRAC 1 cut(s) 192
MroI TCCGGA 2 cut(s) 268, 274
MroXI GAANNNNTTC 1 cut(s) 41
MseI TTAA 2 cut(s) 695, 703
MslI CAYNNNNRTG 1 cut(s) 92
MspA1I CMGCKG 1 cut(s) 578
MspI CCGG 3 cut(s) 257, 269, 275
MwoI GCNNNNNNNGC 3 cut(s) 203, 581, 584
NcoI CCATGG 1 cut(s) 87
NlaIII CATG 5 cut(s) 68, 83, 91, 340, 364
NlaIV GGNNCC 5 cut(s) 85, 168, 261, 273, 659
NmuCI GTSAC 1 cut(s) 312
NspV TTCGAA 1 cut(s) 422
PaeR7I CTCGAG 1 cut(s) 8
PagI TCATGA 2 cut(s) 64, 336
PdmI GAANNNNTTC 1 cut(s) 41
PfeI GAWTC 3 cut(s) 178, 278, 520
PflFI GACNNNGTC 1 cut(s) 142
PflMI CCANNNNNTGG 1 cut(s) 198
PkrI GCNGC 5 cut(s) 418, 577, 580, 583, 586
PleI GAGTC 3 cut(s) 151, 296, 399
PpsI GAGTC 3 cut(s) 151, 296, 399
PspN4I GGNNCC 5 cut(s) 85, 168, 261, 273, 659
PspPI GGNCC 1 cut(s) 166
PstNI CAGNNNCTG 1 cut(s) 581
PsuI RGATCY 6 cut(s) 4, 49, 124, 155, 259, 271
PsyI GACNNNGTC 1 cut(s) 142
PvuII CAGCTG 1 cut(s) 578
RsaI GTAC 1 cut(s) 27
RsaNI GTAC 1 cut(s) 26
RseI CAYNNNNRTG 1 cut(s) 92
SaqAI TTAA 2 cut(s) 695, 703
SatI GCNGC 5 cut(s) 417, 576, 579, 582, 585
Sau96I GGNCC 1 cut(s) 166
ScaI AGTACT 1 cut(s) 27
SchI GAGTC 3 cut(s) 152, 296, 400
SetI ASST 4 cut(s) 44, 199, 580, 687
SfaNI GCATC 3 cut(s) 274, 403, 639
Sfr274I CTCGAG 1 cut(s) 8
SfuI TTCGAA 1 cut(s) 422
SinI GGWCC 1 cut(s) 166
SlaI CTCGAG 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 4 cut(s) 20, 350, 366, 696
SsiI CCGC 1 cut(s) 263
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 1 cut(s) 592
TaqI TCGA 4 cut(s) 9, 296, 408, 422
TasI AATT 4 cut(s) 20, 350, 366, 696
TatI WGTACW 1 cut(s) 25
TfiI GAWTC 3 cut(s) 178, 278, 520
Tru1I TTAA 2 cut(s) 695, 703
Tru9I TTAA 2 cut(s) 695, 703
TscAI CASTG 1 cut(s) 352
TseFI GTSAC 1 cut(s) 312
TseI GCWGC 5 cut(s) 416, 575, 578, 581, 584
Tsp45I GTSAC 1 cut(s) 312
TspDTI ATGAA 3 cut(s) 353, 377, 507
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 1 cut(s) 352
Tth111I GACNNNGTC 1 cut(s) 142
Van91I CCANNNNNTGG 1 cut(s) 198
VpaK11BI GGWCC 1 cut(s) 166
XapI RAATTY 1 cut(s) 350
XhoI CTCGAG 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 41
ZrmI AGTACT 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.