Prupe.7G006100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0009971
Physical Location & Seq
Forward (+)
714852 .. 717217
2366 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G006100.2

Sequence Viewer

Length: 921 bp
ATGGATCTTGATGAGTGGGAGTACCTCCCTGATGATGGGTTTCTTGATTTCCATGAAGAGAAAGAAGAGAAAAGGATTTTCTCCAGCAAGGCATATTCTGATTCCAAAAGTGTTTTCAACATGAACTACTTCATAATCCCATCACCCAATTCAAGAAAACTCATCGAGACACCACCACCAATTCCACCACAAGGGTTTATTAATTCAAGGGTGCCTAATCAGCTTGTGCCTGTTCCAATTCAATTGGAGCTACCTCCAAGCTTTGTCAAGGCCGAAGAAGAAGAAGAACAAGTCCCTGCTGCCAGGGTTCTAGTTGATGAGAAGACTAATTATAAAGCAAAAGCTTTGGAAGCTGATGATCAAGACACACAACTCTCCCAAGTCTACTTCAAGAAAACTTGGGAAAATGAATTTGCCGACATGAAAATGGACTCACCAAAGTCTCCTACCTGCAGATCACCAAGATTTATGCAGCATCAAACTACTGATGCTGCTGCTGCTGTTGCTTCTATTGAGAGCAAGATCACCTCTCCCAGAATGAAAATTGGTGAGAAAAACAACAACTTGTTCGACTCAGAAGACACCAAGAAGGAGGAGGAGGAGGAGGAGGAGGATTTGGTCAAGAATGGGAGGGATCATAACAGCAACAACATCTGGAAGCTGAGCTTAACTGGGATTGGAGCTATTTGCTCTTTTGGTTTTGCTGCCGCTACTATTTGTGTTCTGTTTTTTGGTACGCACCAGAGAAACAAACAGTATCAACAGAACCAGAATCGCTACCAGATCTACACTGATGACAACAAGAGGATTAAGCAGGCAGTTGAGCATGCAACCAAATTCAATGAGGCATTTTCAGCAGTTAGAGGGGTACCCATCACCAGAGCTCATGTCACATTTGGTGGTCACTATAATGGTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

307

Amino Acids

34.98

Weight (kDa)

5.25

Isoelectric Point (pI)

51.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009971)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03870 AT3G03870 AT5G18130 AT5G18130
fragaria_vesca FvH4_1g28230
malus_domestica MD12G1005100.v1.1 MD14G1003600.v1.1
prunus_persica Prupe.7G006100_v2.0.a1 Prupe.7G006100_v2.0.a1
pyrus_communis pycom12g00420 pycom14g00160
rosa_chinensis RchiOBHm_Chr3g0497011
rosa_laevigata RLG00000022489
rosa_multiflora Rmu_sc0000438.1_g000011
rosa_roxburghii Rroxscaffold_6G00388520
rosa_rugosa Rorug03G0288900
rosa_samantha Rh3AG333100 Rh3BG370400 Rh3CG367300 Rh3DG368600
rosa_wichuraiana Rw3G029280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 333
Acc36I ACCTGC 1 cut(s) 458
Acc65I GGTACC 1 cut(s) 868
AccB1I GGYRCC 2 cut(s) 211, 868
AccI GTMKAC 1 cut(s) 384
AciI CCGC 1 cut(s) 708
AclWI GGATC 2 cut(s) 12, 642
AcsI RAATTY 2 cut(s) 410, 836
AfaI GTAC 3 cut(s) 23, 736, 870
AfiI CCNNNNNNNGG 2 cut(s) 35, 191
AgsI TTSAA 6 cut(s) 118, 153, 207, 242, 391, 841
AjnI CCWGG 1 cut(s) 302
AjuI GAANNNNNNNTTGG 2 cut(s) 98, 130
AluBI AGCT 9 cut(s) 223, 250, 261, 344, 353, 661, 666, 683, 884
AluI AGCT 9 cut(s) 223, 250, 261, 344, 353, 661, 666, 683, 884
Alw21I GWGCWC 1 cut(s) 886
Alw26I GTCTC 2 cut(s) 161, 447
AlwI GGATC 2 cut(s) 12, 642
AoxI GGCC 1 cut(s) 270
ApeKI GCWGC 6 cut(s) 299, 472, 491, 494, 497, 704
ApoI RAATTY 2 cut(s) 410, 836
AseI ATTAAT 1 cut(s) 201
Asp700I GAANNNNTTC 1 cut(s) 128
Asp718I GGTACC 1 cut(s) 868
AsuHPI GGTGA 6 cut(s) 135, 426, 450, 517, 560, 868
BanI GGYRCC 2 cut(s) 211, 868
BanII GRGCYC 1 cut(s) 886
BbsI GAAGAC 2 cut(s) 329, 585
Bbv12I GWGCWC 1 cut(s) 886
BbvI GCAGC 6 cut(s) 286, 478, 481, 484, 484, 691
BccI CCATC 3 cut(s) 29, 148, 881
BciT130I CCWGG 1 cut(s) 304
BclI TGATCA 1 cut(s) 358
BcoDI GTCTC 2 cut(s) 161, 447
BfaI CTAG 1 cut(s) 311
BfmI CTRYAG 1 cut(s) 451
BfuAI ACCTGC 1 cut(s) 458
BglII AGATCT 1 cut(s) 783
BisI GCNGC 7 cut(s) 300, 473, 492, 495, 498, 705, 708
BlpI GCTNAGC 1 cut(s) 662
BlsI GCNGC 7 cut(s) 301, 474, 493, 496, 499, 706, 709
Bme1390I CCNGG 1 cut(s) 304
BmiI GGNNCC 2 cut(s) 213, 870
BmrFI CCNGG 1 cut(s) 304
BmrI ACTGGG 1 cut(s) 681
BmsI GCATC 2 cut(s) 478, 484
BmuI ACTGGG 1 cut(s) 681
BpiI GAAGAC 2 cut(s) 329, 585
BpmI CTGGAG 1 cut(s) 67
Bpu1102I GCTNAGC 1 cut(s) 662
BsaJI CCNNGG 1 cut(s) 303
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 191
Bse1I ACTGG 1 cut(s) 676
BseBI CCWGG 1 cut(s) 304
BseDI CCNNGG 1 cut(s) 303
BseLI CCNNNNNNNGG 2 cut(s) 35, 191
BseMII CTCAG 2 cut(s) 588, 653
BseNI ACTGG 1 cut(s) 676
BseRI GAGGAG 6 cut(s) 608, 611, 614, 617, 620, 623
BseXI GCAGC 6 cut(s) 286, 478, 481, 484, 484, 691
BshFI GGCC 1 cut(s) 272
BshNI GGYRCC 2 cut(s) 211, 868
BsiHKAI GWGCWC 1 cut(s) 886
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 2 cut(s) 35, 191
BsmAI GTCTC 2 cut(s) 161, 447
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 886
Bsp143I GATC 6 cut(s) 4, 358, 455, 522, 634, 783
Bsp1720I GCTNAGC 1 cut(s) 662
BspACI CCGC 1 cut(s) 708
BspANI GGCC 1 cut(s) 272
BspCNI CTCAG 2 cut(s) 587, 654
BspLI GGNNCC 2 cut(s) 213, 870
BspMAI CTGCAG 1 cut(s) 455
BspMI ACCTGC 1 cut(s) 458
BspPI GGATC 2 cut(s) 12, 642
BspT107I GGYRCC 2 cut(s) 211, 868
BsrI ACTGG 1 cut(s) 676
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 6 cut(s) 4, 358, 455, 522, 634, 783
Bst2UI CCWGG 1 cut(s) 304
Bst4CI ACNGT 1 cut(s) 756
Bst6I CTCTTC 2 cut(s) 51, 60
BstC8I GCNNGC 2 cut(s) 816, 828
BstDEI CTNAG 2 cut(s) 574, 662
BstKTI GATC 6 cut(s) 7, 361, 458, 525, 637, 786
BstMAI GTCTC 2 cut(s) 161, 447
BstMBI GATC 6 cut(s) 4, 358, 455, 522, 634, 783
BstMWI GCNNNNNNNGC 5 cut(s) 220, 350, 497, 503, 854
BstNI CCWGG 1 cut(s) 304
BstNSI RCATGY 1 cut(s) 830
BstSCI CCNGG 1 cut(s) 302
BstSFI CTRYAG 1 cut(s) 451
BstV1I GCAGC 6 cut(s) 286, 478, 481, 484, 484, 691
BstV2I GAAGAC 2 cut(s) 329, 585
BstX2I RGATCY 2 cut(s) 4, 783
BstYI RGATCY 2 cut(s) 4, 783
BsuRI GGCC 1 cut(s) 272
BtsIMutI CAGTG 1 cut(s) 789
BveI ACCTGC 1 cut(s) 458
Cac8I GCNNGC 2 cut(s) 816, 828
Csp6I GTAC 3 cut(s) 22, 735, 869
CviAII CATG 5 cut(s) 53, 121, 421, 827, 887
CviQI GTAC 3 cut(s) 22, 735, 869
DdeI CTNAG 2 cut(s) 574, 662
DpnI GATC 6 cut(s) 6, 360, 457, 524, 636, 785
DpnII GATC 6 cut(s) 4, 358, 455, 522, 634, 783
Eam1104I CTCTTC 2 cut(s) 51, 60
EarI CTCTTC 2 cut(s) 51, 60
Ecl136II GAGCTC 1 cut(s) 884
Eco24I GRGCYC 1 cut(s) 886
Eco53kI GAGCTC 1 cut(s) 884
EcoICRI GAGCTC 1 cut(s) 884
EcoRII CCWGG 1 cut(s) 302
EcoT38I GRGCYC 1 cut(s) 886
FaeI CATG 5 cut(s) 56, 124, 424, 830, 890
FalI AAGNNNNNCTT 2 cut(s) 650, 682
FaqI GGGAC 1 cut(s) 278
FatI CATG 5 cut(s) 52, 120, 420, 826, 886
FbaI TGATCA 1 cut(s) 358
FblI GTMKAC 1 cut(s) 384
Fnu4HI GCNGC 7 cut(s) 300, 473, 492, 495, 498, 705, 708
FriOI GRGCYC 1 cut(s) 886
Fsp4HI GCNGC 7 cut(s) 300, 473, 492, 495, 498, 705, 708
FspBI CTAG 1 cut(s) 311
GluI GCNGC 7 cut(s) 300, 473, 492, 495, 498, 705, 708
GsuI CTGGAG 1 cut(s) 67
HaeIII GGCC 1 cut(s) 272
Hin1II CATG 5 cut(s) 56, 124, 424, 830, 890
HindIII AAGCTT 2 cut(s) 259, 342
HinfI GANTC 4 cut(s) 101, 431, 572, 772
HphI GGTGA 6 cut(s) 135, 426, 450, 517, 560, 868
Hpy166II GTNNAC 1 cut(s) 385
Hpy188I TCNGA 2 cut(s) 100, 577
Hpy188III TCNNGA 8 cut(s) 8, 44, 153, 166, 362, 391, 622, 655
Hpy8I GTNNAC 1 cut(s) 385
HpyAV CCTTC 1 cut(s) 583
HpyCH4III ACNGT 1 cut(s) 756
HpyCH4V TGCA 3 cut(s) 453, 472, 830
HpyF10VI GCNNNNNNNGC 5 cut(s) 220, 350, 497, 503, 854
HpyF3I CTNAG 2 cut(s) 574, 662
Hsp92II CATG 5 cut(s) 56, 124, 424, 830, 890
KpnI GGTACC 1 cut(s) 872
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 6 cut(s) 4, 358, 455, 522, 634, 783
LmnI GCTCC 2 cut(s) 247, 680
Lsp1109I GCAGC 6 cut(s) 286, 478, 481, 484, 484, 691
LweI GCATC 2 cut(s) 478, 484
MaeI CTAG 1 cut(s) 311
MaeIII GTNAC 2 cut(s) 889, 902
MalI GATC 6 cut(s) 6, 360, 457, 524, 636, 785
MboI GATC 6 cut(s) 4, 358, 455, 522, 634, 783
MboII GAAGA 8 cut(s) 68, 77, 287, 290, 293, 296, 334, 590
MfeI CAATTG 1 cut(s) 242
MflI RGATCY 2 cut(s) 4, 783
MhlI GDGCHC 1 cut(s) 886
MluCI AATT 9 cut(s) 148, 180, 202, 237, 242, 328, 410, 543, 836
MlyI GAGTC 2 cut(s) 425, 566
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 3 cut(s) 201, 668, 810
MslI CAYNNNNRTG 2 cut(s) 425, 909
MspR9I CCNGG 1 cut(s) 304
MunI CAATTG 1 cut(s) 242
MvaI CCWGG 1 cut(s) 304
MwoI GCNNNNNNNGC 5 cut(s) 220, 350, 497, 503, 854
NdeII GATC 6 cut(s) 4, 358, 455, 522, 634, 783
NlaIII CATG 5 cut(s) 56, 124, 424, 830, 890
NlaIV GGNNCC 2 cut(s) 213, 870
NmuCI GTSAC 2 cut(s) 889, 902
NspI RCATGY 1 cut(s) 830
PaeI GCATGC 1 cut(s) 830
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 2 cut(s) 101, 772
PkrI GCNGC 7 cut(s) 301, 474, 493, 496, 499, 706, 709
PleI GAGTC 2 cut(s) 425, 566
PpsI GAGTC 2 cut(s) 425, 566
PshBI ATTAAT 1 cut(s) 201
PsiI TTATAA 1 cut(s) 333
Psp124BI GAGCTC 1 cut(s) 886
Psp6I CCWGG 1 cut(s) 302
PspGI CCWGG 1 cut(s) 302
PspN4I GGNNCC 2 cut(s) 213, 870
PstI CTGCAG 1 cut(s) 455
PsuI RGATCY 2 cut(s) 4, 783
RsaI GTAC 3 cut(s) 23, 736, 870
RsaNI GTAC 3 cut(s) 22, 735, 869
RseI CAYNNNNRTG 2 cut(s) 425, 909
SacI GAGCTC 1 cut(s) 886
SaqAI TTAA 3 cut(s) 201, 668, 810
SatI GCNGC 7 cut(s) 300, 473, 492, 495, 498, 705, 708
Sau3AI GATC 6 cut(s) 4, 358, 455, 522, 634, 783
SchI GAGTC 2 cut(s) 425, 566
ScrFI CCNGG 1 cut(s) 304
SduI GDGCHC 1 cut(s) 886
SfaNI GCATC 2 cut(s) 478, 484
SfcI CTRYAG 1 cut(s) 451
SmiMI CAYNNNNRTG 2 cut(s) 425, 909
SphI GCATGC 1 cut(s) 830
Sse9I AATT 9 cut(s) 148, 180, 202, 237, 242, 328, 410, 543, 836
SsiI CCGC 1 cut(s) 708
SspMI CTAG 1 cut(s) 311
SstI GAGCTC 1 cut(s) 886
StyD4I CCNGG 1 cut(s) 302
TaaI ACNGT 1 cut(s) 756
TaqI TCGA 2 cut(s) 165, 570
TasI AATT 9 cut(s) 148, 180, 202, 237, 242, 328, 410, 543, 836
TauI GCSGC 1 cut(s) 710
TfiI GAWTC 2 cut(s) 101, 772
Tru1I TTAA 3 cut(s) 201, 668, 810
Tru9I TTAA 3 cut(s) 201, 668, 810
TscAI CASTG 1 cut(s) 796
TseFI GTSAC 2 cut(s) 889, 902
TseI GCWGC 6 cut(s) 299, 472, 491, 494, 497, 704
Tsp45I GTSAC 2 cut(s) 889, 902
TspDTI ATGAA 6 cut(s) 69, 121, 137, 423, 437, 554
TspRI CASTG 1 cut(s) 796
VspI ATTAAT 1 cut(s) 201
XapI RAATTY 2 cut(s) 410, 836
XceI RCATGY 1 cut(s) 830
XmiI GTMKAC 1 cut(s) 384
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.