Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000438.1

Orthogroup ID

OG0009971

Physical Location & Seq

Genomic Coordinates Reverse (-)

59953 .. 60993

Gene Structure 1041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000438.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

atggatcttgatgagtgggaatacctccctgatgatgcttttcttgatttccatgaagaaagtgagaagaaggtcttctttagcaagcgctatttcgattccaaaagtgttttcaatatgtaccacgactactgcataatccaatcacccaattcttctagttctaagaaactagttgccaccgatcaagtagctcctgctgtgcctcctaatcagctttctgttcctgttcaaattcaactgcttcctccaccaagctttttcagatccacacaatcaccagatgaagaaaagcaagaggctcttgtgccagtttcagcagcagctgttgttactggtactacaggagcagggggaggcggaggaggaggtgaaggtgaaggtgatcaagacccactactctcccaagtttacttcaagaaaaccacttgggaacccgaatttgtcgacatgaaaatggactcgccaaagtctcctaccagcagaggaggattaggatcaggatttgtgcatcaaactagtagtgattctactgctgctgctggaggagccaagtttcagtttgatgattataatggtgagcccaaggttagctctccaagaatgaaaaccaacaaagaggaggatgaacaaggacagaggcagaacaaaaacatctggaagttgagcttcactggaattggagctatttgctcttttggttttgctgcagctaccatttgtattctgtttttgggtagccaccaaagaaacaaccaaaaccacaaacacttccagatttacactgatgacaacaagaggattaaggaggtggttcagcgagcaaccaaattgaatgaagcattttcagcagtgagaggaggggtacctctaaccagagctcacataacatctggaggttactatactggtgctctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

306

Amino Acids

33.51

Weight (kDa)

5.69

Isoelectric Point (pI)

50.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03870 AT3G03870 AT5G18130 AT5G18130
fragaria_vesca	FvH4_1g28230
malus_domestica	MD12G1005100.v1.1 MD14G1003600.v1.1
prunus_persica	Prupe.7G006100_v2.0.a1 Prupe.7G006100_v2.0.a1
pyrus_communis	pycom12g00420 pycom14g00160
rosa_chinensis	RchiOBHm_Chr3g0497011
rosa_laevigata	RLG00000022489
rosa_multiflora	Rmu_sc0000438.1_g000011
rosa_roxburghii	Rroxscaffold_6G00388520
rosa_rugosa	Rorug03G0288900
rosa_samantha	Rh3AG333100 Rh3BG370400 Rh3CG367300 Rh3DG368600
rosa_wichuraiana	Rw3G029280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	573
Acc65I	GGTACC	1 cut(s)	865
AccB1I	GGYRCC	1 cut(s)	865
AccI	GTMKAC	1 cut(s)	447
AciI	CCGC	1 cut(s)	360
AclWI	GGATC	3 cut(s)	12, 261, 505
AcsI	RAATTY	2 cut(s)	234, 440
AfaI	GTAC	3 cut(s)	122, 340, 867
AfeI	AGCGCT	1 cut(s)	89
AgsI	TTSAA	5 cut(s)	115, 233, 239, 418, 835
AhlI	ACTAGT	2 cut(s)	172, 518
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AluBI	AGCT	9 cut(s)	194, 217, 258, 326, 594, 669, 686, 713, 881
AluI	AGCT	9 cut(s)	194, 217, 258, 326, 594, 669, 686, 713, 881
Alw21I	GWGCWC	2 cut(s)	883, 916
Alw26I	GTCTC	1 cut(s)	477
AlwI	GGATC	3 cut(s)	12, 261, 505
AlwNI	CAGNNNCTG	1 cut(s)	326
Aor51HI	AGCGCT	1 cut(s)	89
ApeKI	GCWGC	6 cut(s)	320, 323, 536, 539, 707, 710
ApoI	RAATTY	2 cut(s)	234, 440
Asp700I	GAANNNNTTC	1 cut(s)	74
Asp718I	GGTACC	1 cut(s)	865
AspLEI	GCGC	1 cut(s)	90
AsuHPI	GGTGA	6 cut(s)	138, 270, 383, 389, 395, 590
BanI	GGYRCC	1 cut(s)	865
BanII	GRGCYC	2 cut(s)	585, 883
BbsI	GAAGAC	1 cut(s)	67
Bbv12I	GWGCWC	2 cut(s)	883, 916
BbvI	GCAGC	6 cut(s)	332, 335, 523, 526, 694, 722
BclI	TGATCA	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	477
BcuI	ACTAGT	2 cut(s)	172, 518
BfaI	CTAG	3 cut(s)	159, 173, 519
BfmI	CTRYAG	2 cut(s)	342, 708
BfoI	RGCGCY	1 cut(s)	91
BisI	GCNGC	6 cut(s)	321, 324, 537, 540, 708, 711
BlsI	GCNGC	6 cut(s)	322, 325, 538, 541, 709, 712
BmiI	GGNNCC	3 cut(s)	435, 550, 867
BmsI	GCATC	2 cut(s)	25, 520
BpiI	GAAGAC	1 cut(s)	67
BpmI	CTGGAG	2 cut(s)	564, 915
BsaBI	GATNNNNATC	1 cut(s)	496
BsaJI	CCNNGG	1 cut(s)	585
Bse1I	ACTGG	4 cut(s)	311, 340, 679, 913
Bse8I	GATNNNNATC	1 cut(s)	496
BseDI	CCNNGG	1 cut(s)	585
BseGI	GGATG	1 cut(s)	631
BseJI	GATNNNNATC	1 cut(s)	496
BseNI	ACTGG	4 cut(s)	311, 340, 679, 913
BseRI	GAGGAG	6 cut(s)	378, 381, 501, 561, 635, 873
BseXI	GCAGC	6 cut(s)	332, 335, 523, 526, 694, 722
BshNI	GGYRCC	1 cut(s)	865
BsiHKAI	GWGCWC	2 cut(s)	883, 916
BsmAI	GTCTC	1 cut(s)	477
Bsp1286I	GDGCHC	3 cut(s)	585, 883, 916
Bsp143I	GATC	5 cut(s)	4, 184, 266, 385, 497
BspACI	CCGC	1 cut(s)	360
BspLI	GGNNCC	3 cut(s)	435, 550, 867
BspMAI	CTGCAG	1 cut(s)	712
BspPI	GGATC	3 cut(s)	12, 261, 505
BspT107I	GGYRCC	1 cut(s)	865
BsrI	ACTGG	4 cut(s)	311, 340, 679, 913
BssECI	CCNNGG	1 cut(s)	585
BssMI	GATC	5 cut(s)	4, 184, 266, 385, 497
BssT1I	CCWWGG	1 cut(s)	585
BstC8I	GCNNGC	2 cut(s)	86, 822
BstDEI	CTNAG	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	631
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	5 cut(s)	7, 187, 269, 388, 500
BstMAI	GTCTC	1 cut(s)	477
BstMBI	GATC	5 cut(s)	4, 184, 266, 385, 497
BstMWI	GCNNNNNNNGC	2 cut(s)	548, 848
BstSFI	CTRYAG	2 cut(s)	342, 708
BstV1I	GCAGC	6 cut(s)	332, 335, 523, 526, 694, 722
BstV2I	GAAGAC	1 cut(s)	67
BstX2I	RGATCY	2 cut(s)	4, 266
BstYI	RGATCY	2 cut(s)	4, 266
BtsCI	GGATG	1 cut(s)	631
BtsI	GCAGTG	1 cut(s)	858
BtsIMutI	CAGTG	3 cut(s)	672, 783, 858
Cac8I	GCNNGC	2 cut(s)	86, 822
CaiI	CAGNNNCTG	1 cut(s)	326
CfoI	GCGC	1 cut(s)	90
Csp6I	GTAC	3 cut(s)	121, 339, 866
CviAII	CATG	2 cut(s)	53, 451
CviQI	GTAC	3 cut(s)	121, 339, 866
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	5 cut(s)	6, 186, 268, 387, 499
DpnII	GATC	5 cut(s)	4, 184, 266, 385, 497
EciI	GGCGGA	1 cut(s)	375
Ecl136II	GAGCTC	1 cut(s)	881
Eco130I	CCWWGG	1 cut(s)	585
Eco24I	GRGCYC	2 cut(s)	585, 883
Eco47III	AGCGCT	1 cut(s)	89
Eco53kI	GAGCTC	1 cut(s)	881
EcoICRI	GAGCTC	1 cut(s)	881
EcoT14I	CCWWGG	1 cut(s)	585
EcoT38I	GRGCYC	2 cut(s)	585, 883
ErhI	CCWWGG	1 cut(s)	585
FaeI	CATG	2 cut(s)	56, 454
FaiI	YATR	8 cut(s)	54, 119, 137, 452, 573, 887, 906, 919
FalI	AAGNNNNNCTT	8 cut(s)	59, 91, 62, 94, 288, 320, 653, 685
FatI	CATG	2 cut(s)	52, 450
FbaI	TGATCA	1 cut(s)	385
FblI	GTMKAC	1 cut(s)	447
Fnu4HI	GCNGC	6 cut(s)	321, 324, 537, 540, 708, 711
FokI	GGATG	1 cut(s)	638
FriOI	GRGCYC	2 cut(s)	585, 883
Fsp4HI	GCNGC	6 cut(s)	321, 324, 537, 540, 708, 711
FspBI	CTAG	3 cut(s)	159, 173, 519
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	6 cut(s)	321, 324, 537, 540, 708, 711
GsuI	CTGGAG	2 cut(s)	564, 915
HaeII	RGCGCY	1 cut(s)	91
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	2 cut(s)	56, 454
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HindIII	AAGCTT	1 cut(s)	256
HinfI	GANTC	3 cut(s)	98, 461, 527
HphI	GGTGA	6 cut(s)	138, 270, 383, 389, 395, 590
Hpy166II	GTNNAC	2 cut(s)	412, 448
Hpy188I	TCNGA	1 cut(s)	266
Hpy188III	TCNNGA	8 cut(s)	8, 44, 389, 418, 501, 658, 775, 894
Hpy8I	GTNNAC	2 cut(s)	412, 448
HpyAV	CCTTC	3 cut(s)	64, 368, 374
HpyCH4V	TGCA	3 cut(s)	135, 511, 710
HpyF10VI	GCNNNNNNNGC	2 cut(s)	548, 848
HpyF3I	CTNAG	1 cut(s)	165
Hsp92II	CATG	2 cut(s)	56, 454
HspAI	GCGC	1 cut(s)	88
KpnI	GGTACC	1 cut(s)	869
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	5 cut(s)	4, 184, 266, 385, 497
LmnI	GCTCC	4 cut(s)	199, 347, 548, 683
Lsp1109I	GCAGC	6 cut(s)	332, 335, 523, 526, 694, 722
LweI	GCATC	2 cut(s)	25, 520
MaeI	CTAG	3 cut(s)	159, 173, 519
MaeIII	GTNAC	2 cut(s)	331, 899
MalI	GATC	5 cut(s)	6, 186, 268, 387, 499
MboI	GATC	5 cut(s)	4, 184, 266, 385, 497
MboII	GAAGA	5 cut(s)	67, 68, 79, 147, 299
MflI	RGATCY	2 cut(s)	4, 266
MhlI	GDGCHC	3 cut(s)	585, 883, 916
MluCI	AATT	5 cut(s)	151, 234, 440, 678, 830
MlyI	GAGTC	1 cut(s)	455
MroXI	GAANNNNTTC	1 cut(s)	74
MseI	TTAA	1 cut(s)	804
MslI	CAYNNNNRTG	1 cut(s)	455
MspA1I	CMGCKG	1 cut(s)	326
MwoI	GCNNNNNNNGC	2 cut(s)	548, 848
NdeII	GATC	5 cut(s)	4, 184, 266, 385, 497
NlaIII	CATG	2 cut(s)	56, 454
NlaIV	GGNNCC	3 cut(s)	435, 550, 867
PdmI	GAANNNNTTC	1 cut(s)	74
PfeI	GAWTC	2 cut(s)	98, 527
PkrI	GCNGC	6 cut(s)	322, 325, 538, 541, 709, 712
PleI	GAGTC	1 cut(s)	455
PpsI	GAGTC	1 cut(s)	455
PsiI	TTATAA	1 cut(s)	573
Psp124BI	GAGCTC	1 cut(s)	883
PspN4I	GGNNCC	3 cut(s)	435, 550, 867
PstI	CTGCAG	1 cut(s)	712
PstNI	CAGNNNCTG	1 cut(s)	326
PsuI	RGATCY	2 cut(s)	4, 266
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	3 cut(s)	122, 340, 867
RsaNI	GTAC	3 cut(s)	121, 339, 866
RseI	CAYNNNNRTG	1 cut(s)	455
SacI	GAGCTC	1 cut(s)	883
SalI	GTCGAC	1 cut(s)	446
SaqAI	TTAA	1 cut(s)	804
SatI	GCNGC	6 cut(s)	321, 324, 537, 540, 708, 711
Sau3AI	GATC	5 cut(s)	4, 184, 266, 385, 497
SchI	GAGTC	1 cut(s)	455
SduI	GDGCHC	3 cut(s)	585, 883, 916
SfaNI	GCATC	2 cut(s)	25, 520
SfcI	CTRYAG	2 cut(s)	342, 708
SmiMI	CAYNNNNRTG	1 cut(s)	455
SpeI	ACTAGT	2 cut(s)	172, 518
Sse9I	AATT	5 cut(s)	151, 234, 440, 678, 830
SsiI	CCGC	1 cut(s)	360
SspMI	CTAG	3 cut(s)	159, 173, 519
SstI	GAGCTC	1 cut(s)	883
StyI	CCWWGG	1 cut(s)	585
TaqI	TCGA	2 cut(s)	96, 447
TasI	AATT	5 cut(s)	151, 234, 440, 678, 830
TfiI	GAWTC	2 cut(s)	98, 527
Tru1I	TTAA	1 cut(s)	804
Tru9I	TTAA	1 cut(s)	804
TscAI	CASTG	3 cut(s)	679, 790, 858
TseI	GCWGC	6 cut(s)	320, 323, 536, 539, 707, 710
TspDTI	ATGAA	6 cut(s)	69, 300, 467, 620, 642, 852
TspRI	CASTG	3 cut(s)	679, 790, 858
XapI	RAATTY	2 cut(s)	234, 440
XmiI	GTMKAC	1 cut(s)	447
XmnI	GAANNNNTTC	1 cut(s)	74
XspI	CTAG	3 cut(s)	159, 173, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.