RLG00000022489

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0009971
Physical Location & Seq
Reverse (-)
1685237 .. 1686283
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022489

Sequence Viewer

Length: 927 bp
ATGGATCTTGATGAGTGGGAATACCTCCCTGATGATGCTTTTCTTGATTTCCATGAAGAAAGTGAGAAGAAGGTCTTCTTTAGCAAGCGCTATTTCGATTCCAAAAGTGTTTTCAATATGTACCACGACTACTGCATAATCCAATCACCCAATTCTTCTAGTTCTAAGAAACTAGTTGCCACAGATCAAGTAGCTCCTGCTGTGCCTCCTAATCAACTTTCTGTTCCTGTTCAAATTCAACTGCTTCCTCCACCAAGCTTTTTCAGATCCACACAATCACCAGATGAAGAAAAGCAAGAGGCTCTTGTGCCAGTTTCAGCAGCAGCTGTTGTTACTGGTACTACAGGAGCAGGAGGAGGAGGAGGAGGAGGTGAAGGTGAAGGTGAAGGTGATCAAGACCCACTACTCTCCCAAGTTTACTTCAAGAAGACCACTTGGGAACCCGAATTTGTCGACATGAAAATGGACTCGCCAAAGTCTCCTACCAGCAGAGGAGGATTAGGATCAGGATTTGTGCATCAAACTAGTAGTGATTCTACTACTGCTGCTGGAGGAGCCAAGTTTCAGTTTGATGATTATAATGATGAGCCCAAGGTCAGCTCTCCAAGAATGAAAACCAACAAAGAGGAGGATGAACAAGGACAGAGGCAGAACAATAACATCTGGAAGTTGAGCTTCACTGGAATTGGAGCTATTTGCTCTTTTGGTTTTGCTGCAGCTACCATTTGTATTCTGTTTTTAGGTAGCCACCAAAGAAACAACCAAAACCACAAACACTTCCAGATTTACACTGATGACAACAAGAGGATTAAGGAGGTGGTTCAGCGAGCAACCAAATTGAATGAAGCATTTTCAGCAGTGAGAGGAGGGGTACCTCTAACCAGAGCTCACTTAACATCTGGAGGTTACTATACTGGTGCTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

309

Amino Acids

33.77

Weight (kDa)

5.32

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6821 PF20705 131 - 306 5.6e-52 Family of unknown function (DUF6821)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009971)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03870 AT3G03870 AT5G18130 AT5G18130
fragaria_vesca FvH4_1g28230
malus_domestica MD12G1005100.v1.1 MD14G1003600.v1.1
prunus_persica Prupe.7G006100_v2.0.a1 Prupe.7G006100_v2.0.a1
pyrus_communis pycom12g00420 pycom14g00160
rosa_chinensis RchiOBHm_Chr3g0497011
rosa_laevigata RLG00000022489
rosa_multiflora Rmu_sc0000438.1_g000011
rosa_roxburghii Rroxscaffold_6G00388520
rosa_rugosa Rorug03G0288900
rosa_samantha Rh3AG333100 Rh3BG370400 Rh3CG367300 Rh3DG368600
rosa_wichuraiana Rw3G029280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 579
Acc65I GGTACC 1 cut(s) 871
AccB1I GGYRCC 1 cut(s) 871
AccI GTMKAC 1 cut(s) 453
AclWI GGATC 3 cut(s) 12, 261, 511
AcsI RAATTY 2 cut(s) 234, 446
AfaI GTAC 3 cut(s) 122, 340, 873
AfeI AGCGCT 1 cut(s) 89
AgsI TTSAA 5 cut(s) 115, 233, 239, 424, 841
AhlI ACTAGT 2 cut(s) 172, 524
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AluBI AGCT 8 cut(s) 194, 258, 326, 600, 675, 692, 719, 887
AluI AGCT 8 cut(s) 194, 258, 326, 600, 675, 692, 719, 887
Alw21I GWGCWC 2 cut(s) 889, 922
Alw26I GTCTC 1 cut(s) 483
AlwI GGATC 3 cut(s) 12, 261, 511
AlwNI CAGNNNCTG 1 cut(s) 326
Aor51HI AGCGCT 1 cut(s) 89
ApeKI GCWGC 5 cut(s) 320, 323, 545, 713, 716
ApoI RAATTY 2 cut(s) 234, 446
Asp700I GAANNNNTTC 1 cut(s) 74
Asp718I GGTACC 1 cut(s) 871
AspLEI GCGC 1 cut(s) 90
AsuHPI GGTGA 6 cut(s) 138, 270, 383, 389, 395, 401
BanI GGYRCC 1 cut(s) 871
BanII GRGCYC 2 cut(s) 591, 889
BbsI GAAGAC 2 cut(s) 67, 434
Bbv12I GWGCWC 2 cut(s) 889, 922
BbvI GCAGC 5 cut(s) 332, 335, 532, 700, 728
BclI TGATCA 1 cut(s) 391
BcoDI GTCTC 1 cut(s) 483
BcuI ACTAGT 2 cut(s) 172, 524
BfaI CTAG 3 cut(s) 159, 173, 525
BfmI CTRYAG 2 cut(s) 342, 714
BfoI RGCGCY 1 cut(s) 91
BisI GCNGC 5 cut(s) 321, 324, 546, 714, 717
BlsI GCNGC 5 cut(s) 322, 325, 547, 715, 718
BmiI GGNNCC 3 cut(s) 441, 556, 873
BmsI GCATC 2 cut(s) 25, 526
BpiI GAAGAC 2 cut(s) 67, 434
BpmI CTGGAG 2 cut(s) 570, 921
BsaBI GATNNNNATC 1 cut(s) 502
BsaJI CCNNGG 1 cut(s) 591
Bse1I ACTGG 4 cut(s) 311, 340, 685, 919
Bse8I GATNNNNATC 1 cut(s) 502
BseDI CCNNGG 1 cut(s) 591
BseGI GGATG 1 cut(s) 637
BseJI GATNNNNATC 1 cut(s) 502
BseNI ACTGG 4 cut(s) 311, 340, 685, 919
BseRI GAGGAG 9 cut(s) 369, 372, 375, 378, 381, 507, 567, 641, 879
BseXI GCAGC 5 cut(s) 332, 335, 532, 700, 728
BshNI GGYRCC 1 cut(s) 871
BsiHKAI GWGCWC 2 cut(s) 889, 922
BsmAI GTCTC 1 cut(s) 483
Bsp1286I GDGCHC 3 cut(s) 591, 889, 922
Bsp143I GATC 5 cut(s) 4, 184, 266, 391, 503
BspLI GGNNCC 3 cut(s) 441, 556, 873
BspMAI CTGCAG 1 cut(s) 718
BspPI GGATC 3 cut(s) 12, 261, 511
BspT107I GGYRCC 1 cut(s) 871
BsrI ACTGG 4 cut(s) 311, 340, 685, 919
BssECI CCNNGG 1 cut(s) 591
BssMI GATC 5 cut(s) 4, 184, 266, 391, 503
BssT1I CCWWGG 1 cut(s) 591
BstC8I GCNNGC 2 cut(s) 86, 828
BstDEI CTNAG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 637
BstH2I RGCGCY 1 cut(s) 91
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 5 cut(s) 7, 187, 269, 394, 506
BstMAI GTCTC 1 cut(s) 483
BstMBI GATC 5 cut(s) 4, 184, 266, 391, 503
BstMWI GCNNNNNNNGC 2 cut(s) 554, 854
BstSFI CTRYAG 2 cut(s) 342, 714
BstV1I GCAGC 5 cut(s) 332, 335, 532, 700, 728
BstV2I GAAGAC 2 cut(s) 67, 434
BstX2I RGATCY 2 cut(s) 4, 266
BstYI RGATCY 2 cut(s) 4, 266
BtsCI GGATG 1 cut(s) 637
BtsI GCAGTG 1 cut(s) 864
BtsIMutI CAGTG 3 cut(s) 678, 789, 864
Cac8I GCNNGC 2 cut(s) 86, 828
CaiI CAGNNNCTG 1 cut(s) 326
CfoI GCGC 1 cut(s) 90
Csp6I GTAC 3 cut(s) 121, 339, 872
CviAII CATG 2 cut(s) 53, 457
CviQI GTAC 3 cut(s) 121, 339, 872
DdeI CTNAG 1 cut(s) 165
DpnI GATC 5 cut(s) 6, 186, 268, 393, 505
DpnII GATC 5 cut(s) 4, 184, 266, 391, 503
Ecl136II GAGCTC 1 cut(s) 887
Eco130I CCWWGG 1 cut(s) 591
Eco24I GRGCYC 2 cut(s) 591, 889
Eco47III AGCGCT 1 cut(s) 89
Eco53kI GAGCTC 1 cut(s) 887
EcoICRI GAGCTC 1 cut(s) 887
EcoT14I CCWWGG 1 cut(s) 591
EcoT38I GRGCYC 2 cut(s) 591, 889
ErhI CCWWGG 1 cut(s) 591
FaeI CATG 2 cut(s) 56, 460
FaiI YATR 7 cut(s) 54, 119, 137, 458, 579, 912, 925
FalI AAGNNNNNCTT 8 cut(s) 59, 91, 62, 94, 288, 320, 659, 691
FatI CATG 2 cut(s) 52, 456
FbaI TGATCA 1 cut(s) 391
FblI GTMKAC 1 cut(s) 453
Fnu4HI GCNGC 5 cut(s) 321, 324, 546, 714, 717
FokI GGATG 1 cut(s) 644
FriOI GRGCYC 2 cut(s) 591, 889
Fsp4HI GCNGC 5 cut(s) 321, 324, 546, 714, 717
FspBI CTAG 3 cut(s) 159, 173, 525
GlaI GCGC 1 cut(s) 89
GluI GCNGC 5 cut(s) 321, 324, 546, 714, 717
GsuI CTGGAG 2 cut(s) 570, 921
HaeII RGCGCY 1 cut(s) 91
HhaI GCGC 1 cut(s) 90
Hin1II CATG 2 cut(s) 56, 460
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HindIII AAGCTT 1 cut(s) 256
HinfI GANTC 3 cut(s) 98, 467, 533
HphI GGTGA 6 cut(s) 138, 270, 383, 389, 395, 401
Hpy166II GTNNAC 2 cut(s) 418, 454
Hpy188I TCNGA 1 cut(s) 266
Hpy188III TCNNGA 8 cut(s) 8, 44, 395, 424, 507, 664, 781, 900
Hpy8I GTNNAC 2 cut(s) 418, 454
HpyAV CCTTC 4 cut(s) 64, 368, 374, 380
HpyCH4V TGCA 3 cut(s) 135, 517, 716
HpyF10VI GCNNNNNNNGC 2 cut(s) 554, 854
HpyF3I CTNAG 1 cut(s) 165
Hsp92II CATG 2 cut(s) 56, 460
HspAI GCGC 1 cut(s) 88
KpnI GGTACC 1 cut(s) 875
Ksp22I TGATCA 1 cut(s) 391
Kzo9I GATC 5 cut(s) 4, 184, 266, 391, 503
LmnI GCTCC 4 cut(s) 199, 347, 554, 689
Lsp1109I GCAGC 5 cut(s) 332, 335, 532, 700, 728
LweI GCATC 2 cut(s) 25, 526
MaeI CTAG 3 cut(s) 159, 173, 525
MaeIII GTNAC 2 cut(s) 331, 905
MalI GATC 5 cut(s) 6, 186, 268, 393, 505
MboI GATC 5 cut(s) 4, 184, 266, 391, 503
MboII GAAGA 6 cut(s) 67, 68, 79, 147, 299, 439
MflI RGATCY 2 cut(s) 4, 266
MhlI GDGCHC 3 cut(s) 591, 889, 922
MluCI AATT 5 cut(s) 151, 234, 446, 684, 836
MlyI GAGTC 1 cut(s) 461
MroXI GAANNNNTTC 1 cut(s) 74
MseI TTAA 2 cut(s) 810, 893
MslI CAYNNNNRTG 1 cut(s) 461
MspA1I CMGCKG 1 cut(s) 326
MwoI GCNNNNNNNGC 2 cut(s) 554, 854
NdeII GATC 5 cut(s) 4, 184, 266, 391, 503
NlaIII CATG 2 cut(s) 56, 460
NlaIV GGNNCC 3 cut(s) 441, 556, 873
PdmI GAANNNNTTC 1 cut(s) 74
PfeI GAWTC 2 cut(s) 98, 533
PkrI GCNGC 5 cut(s) 322, 325, 547, 715, 718
PleI GAGTC 1 cut(s) 461
PpsI GAGTC 1 cut(s) 461
PsiI TTATAA 1 cut(s) 579
Psp124BI GAGCTC 1 cut(s) 889
PspN4I GGNNCC 3 cut(s) 441, 556, 873
PstI CTGCAG 1 cut(s) 718
PstNI CAGNNNCTG 1 cut(s) 326
PsuI RGATCY 2 cut(s) 4, 266
PvuII CAGCTG 1 cut(s) 326
RsaI GTAC 3 cut(s) 122, 340, 873
RsaNI GTAC 3 cut(s) 121, 339, 872
RseI CAYNNNNRTG 1 cut(s) 461
SacI GAGCTC 1 cut(s) 889
SalI GTCGAC 1 cut(s) 452
SaqAI TTAA 2 cut(s) 810, 893
SatI GCNGC 5 cut(s) 321, 324, 546, 714, 717
Sau3AI GATC 5 cut(s) 4, 184, 266, 391, 503
SchI GAGTC 1 cut(s) 461
SduI GDGCHC 3 cut(s) 591, 889, 922
SfaNI GCATC 2 cut(s) 25, 526
SfcI CTRYAG 2 cut(s) 342, 714
SmiMI CAYNNNNRTG 1 cut(s) 461
SpeI ACTAGT 2 cut(s) 172, 524
Sse9I AATT 5 cut(s) 151, 234, 446, 684, 836
SspMI CTAG 3 cut(s) 159, 173, 525
SstI GAGCTC 1 cut(s) 889
StyI CCWWGG 1 cut(s) 591
TaqI TCGA 2 cut(s) 96, 453
TasI AATT 5 cut(s) 151, 234, 446, 684, 836
TfiI GAWTC 2 cut(s) 98, 533
Tru1I TTAA 2 cut(s) 810, 893
Tru9I TTAA 2 cut(s) 810, 893
TscAI CASTG 3 cut(s) 685, 796, 864
TseI GCWGC 5 cut(s) 320, 323, 545, 713, 716
TspDTI ATGAA 6 cut(s) 69, 300, 473, 626, 648, 858
TspRI CASTG 3 cut(s) 685, 796, 864
XapI RAATTY 2 cut(s) 234, 446
XmiI GTMKAC 1 cut(s) 453
XmnI GAANNNNTTC 1 cut(s) 74
XspI CTAG 3 cut(s) 159, 173, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.