AT5G18130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009971
Physical Location & Seq
Forward (+)
5995323 .. 5997498
2176 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G18130.2

Sequence Viewer

Length: 843 bp
ATGGATCTAGAAGATTGGGAAATACTCCCCAAAATCAACTACAAGGGTCTCGAACTTGATCTCGGTCATGAAGAGGATCATGAAGTTACGAAGATGATGAGAAACACCGCAAAAAGCTTCGACAGTGATTACTTCATCTGCCCAATTCAAGATTCTGTCGGAAAGACAGAGTTTCTTCATCAGAGATCTAGCGTGGTCCCCACACAACTCCTCCAGATTCCAATAACTTGGGAACCTTTGTCCCCCGTGGACGACAAAGATCACAATAAGTACCTGGATCCGGATTTCTCGGAACCAGACCCGGAACTTTTGACGGAGTCTTTTCCGTCGCCGAGAATAACCTTCAAGAAATCGAAGGAAACCGAATTTGCCGACATGAAAATAGATTCACCAGCAGCGAGGTTCACTAGTCCTCTGCCGCAGAACGATGAGAGACACTCTGACTCAGAAGGAGGGTTAGGAGGAGAGTCTTATGATGAGATCATGGGATCAGAGGTTGAAGAAAGCAGTGACTTGAGTAGCAAGAAAGAGGTTGATTGGGATGAAGGTGAAAGAACGAATCTGTGGAAGAAGGGTCTTAATGGAATTGGAGCTATATGTTCATTTGGTGTTGCAGCTGCTGCAGCCACCATATGTGTCTTCTTCCTTGGACACAACAGTAGCATCCAAGGTGGTCGGAACAAGAACCAGATCCTCAGGTTCCAGATTTACTCTGATGATAATAAGCGGATGAACGAGGTAGTGAAACATGCAACAAAGCTAAATGAAGCAATCTCTGTGATGAAAGGTCTTCCGGTGGCAAGAGCTCAAATATCTTTTGGAGGATACTACGATGCACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

280

Amino Acids

31.43

Weight (kDa)

4.75

Isoelectric Point (pI)

51.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6821 PF20705 113 - 245 8.2e-27 Family of unknown function (DUF6821)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009971)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03870 AT3G03870 AT5G18130 AT5G18130
fragaria_vesca FvH4_1g28230
malus_domestica MD12G1005100.v1.1 MD14G1003600.v1.1
prunus_persica Prupe.7G006100_v2.0.a1 Prupe.7G006100_v2.0.a1
pyrus_communis pycom12g00420 pycom14g00160
rosa_chinensis RchiOBHm_Chr3g0497011
rosa_laevigata RLG00000022489
rosa_multiflora Rmu_sc0000438.1_g000011
rosa_roxburghii Rroxscaffold_6G00388520
rosa_rugosa Rorug03G0288900
rosa_samantha Rh3AG333100 Rh3BG370400 Rh3CG367300 Rh3DG368600
rosa_wichuraiana Rw3G029280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 280
AciI CCGC 3 cut(s) 108, 419, 727
AclWI GGATC 6 cut(s) 12, 84, 272, 285, 496, 685
AcsI RAATTY 1 cut(s) 365
AfaI GTAC 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 280
AgsI TTSAA 3 cut(s) 149, 346, 500
AhlI ACTAGT 1 cut(s) 407
AjnI CCWGG 1 cut(s) 273
AjuI GAANNNNNNNTTGG 2 cut(s) 136, 168
AluBI AGCT 5 cut(s) 117, 593, 617, 760, 806
AluI AGCT 5 cut(s) 117, 593, 617, 760, 806
Alw21I GWGCWC 1 cut(s) 808
Alw26I GTCTC 2 cut(s) 53, 427
AlwI GGATC 6 cut(s) 12, 84, 272, 285, 496, 685
AlwNI CAGNNNCTG 1 cut(s) 620
Aor13HI TCCGGA 1 cut(s) 280
ApeKI GCWGC 5 cut(s) 395, 614, 617, 620, 623
ApoI RAATTY 1 cut(s) 365
AspS9I GGNCC 1 cut(s) 196
AsuC2I CCSGG 1 cut(s) 302
AsuHPI GGTGA 2 cut(s) 381, 560
AvaII GGWCC 1 cut(s) 196
AxyI CCTNAGG 1 cut(s) 695
BamHI GGATCC 1 cut(s) 277
BanII GRGCYC 1 cut(s) 808
BbsI GAAGAC 2 cut(s) 631, 782
Bbv12I GWGCWC 1 cut(s) 808
BbvI GCAGC 5 cut(s) 407, 604, 607, 626, 635
BciT130I CCWGG 1 cut(s) 275
BciVI GTATCC 1 cut(s) 818
BcnI CCSGG 1 cut(s) 302
BcoDI GTCTC 2 cut(s) 53, 427
BcuI ACTAGT 1 cut(s) 407
BfaI CTAG 3 cut(s) 8, 189, 408
BfmI CTRYAG 1 cut(s) 621
BfuI GTATCC 1 cut(s) 818
BglII AGATCT 1 cut(s) 185
BisI GCNGC 6 cut(s) 396, 419, 615, 618, 621, 624
BlsI GCNGC 6 cut(s) 397, 420, 616, 619, 622, 625
Bme1390I CCNGG 2 cut(s) 275, 302
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 5 cut(s) 198, 234, 279, 294, 701
BmrFI CCNGG 2 cut(s) 275, 302
BmsI GCATC 2 cut(s) 672, 823
BpiI GAAGAC 2 cut(s) 631, 782
BplI GAGNNNNNCTC 2 cut(s) 422, 454
BpmI CTGGAG 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 535
BpuMI CCSGG 1 cut(s) 302
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 3 cut(s) 246, 646, 667
BsaWI WCCGGW 2 cut(s) 280, 793
BsaXI ACNNNNNCTCC 2 cut(s) 195, 225
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse21I CCTNAGG 1 cut(s) 695
BseAI TCCGGA 1 cut(s) 280
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 3 cut(s) 246, 646, 667
BseGI GGATG 3 cut(s) 547, 663, 735
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMII CTCAG 2 cut(s) 459, 709
BseRI GAGGAG 2 cut(s) 200, 477
BseXI GCAGC 5 cut(s) 407, 604, 607, 626, 635
BsiHKAI GWGCWC 1 cut(s) 808
BsiSI CCGG 3 cut(s) 281, 302, 794
BslFI GGGAC 2 cut(s) 182, 226
BslI CCNNNNNNNGG 1 cut(s) 280
BsmAI GTCTC 2 cut(s) 53, 427
BsmFI GGGAC 2 cut(s) 182, 226
Bso31I GGTCTC 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 808
Bsp13I TCCGGA 1 cut(s) 280
Bsp143I GATC 9 cut(s) 4, 58, 76, 185, 259, 277, 480, 488, 690
BspACI CCGC 3 cut(s) 108, 419, 727
BspCNI CTCAG 2 cut(s) 458, 708
BspEI TCCGGA 1 cut(s) 280
BspHI TCATGA 2 cut(s) 67, 79
BspLI GGNNCC 5 cut(s) 198, 234, 279, 294, 701
BspMAI CTGCAG 1 cut(s) 625
BspPI GGATC 6 cut(s) 12, 84, 272, 285, 496, 685
BspTNI GGTCTC 1 cut(s) 53
BssECI CCNNGG 3 cut(s) 246, 646, 667
BssMI GATC 9 cut(s) 4, 58, 76, 185, 259, 277, 480, 488, 690
BssT1I CCWWGG 2 cut(s) 646, 667
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 2 cut(s) 125, 659
Bst6I CTCTTC 1 cut(s) 66
BstAPI GCANNNNNTGC 1 cut(s) 620
BstDEI CTNAG 2 cut(s) 445, 695
BstDSI CCRYGG 1 cut(s) 246
BstF5I GGATG 3 cut(s) 547, 663, 735
BstKTI GATC 9 cut(s) 7, 61, 79, 188, 262, 280, 483, 491, 693
BstMAI GTCTC 2 cut(s) 53, 427
BstMBI GATC 9 cut(s) 4, 58, 76, 185, 259, 277, 480, 488, 690
BstMWI GCNNNNNNNGC 2 cut(s) 620, 623
BstNI CCWGG 1 cut(s) 275
BstNSI RCATGY 1 cut(s) 752
BstSCI CCNGG 2 cut(s) 273, 300
BstSFI CTRYAG 1 cut(s) 621
BstV1I GCAGC 5 cut(s) 407, 604, 607, 626, 635
BstV2I GAAGAC 2 cut(s) 631, 782
BstX2I RGATCY 4 cut(s) 4, 185, 277, 690
BstXI CCANNNNNNTGG 1 cut(s) 228
BstYI RGATCY 4 cut(s) 4, 185, 277, 690
Bsu36I CCTNAGG 1 cut(s) 695
BsuI GTATCC 1 cut(s) 818
BtgI CCRYGG 1 cut(s) 246
BtsCI GGATG 3 cut(s) 547, 663, 735
BtsI GCAGTG 1 cut(s) 514
BtsIMutI CAGTG 2 cut(s) 130, 514
CaiI CAGNNNCTG 1 cut(s) 620
CciI TCATGA 2 cut(s) 67, 79
Cfr13I GGNCC 1 cut(s) 196
Csp6I GTAC 1 cut(s) 271
CviAII CATG 5 cut(s) 68, 80, 376, 484, 749
CviJI RGCY 6 cut(s) 117, 593, 617, 626, 760, 806
CviKI_1 RGCY 6 cut(s) 117, 593, 617, 626, 760, 806
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 2 cut(s) 445, 695
DpnI GATC 9 cut(s) 6, 60, 78, 187, 261, 279, 482, 490, 692
DpnII GATC 9 cut(s) 4, 58, 76, 185, 259, 277, 480, 488, 690
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 806
Eco130I CCWWGG 2 cut(s) 646, 667
Eco24I GRGCYC 1 cut(s) 808
Eco31I GGTCTC 1 cut(s) 53
Eco47I GGWCC 1 cut(s) 196
Eco53kI GAGCTC 1 cut(s) 806
Eco81I CCTNAGG 1 cut(s) 695
EcoICRI GAGCTC 1 cut(s) 806
EcoRII CCWGG 1 cut(s) 273
EcoT14I CCWWGG 2 cut(s) 646, 667
EcoT38I GRGCYC 1 cut(s) 808
ErhI CCWWGG 2 cut(s) 646, 667
FaeI CATG 5 cut(s) 71, 83, 379, 487, 752
FaqI GGGAC 2 cut(s) 182, 226
FatI CATG 5 cut(s) 67, 79, 375, 483, 748
FauNDI CATATG 1 cut(s) 632
Fnu4HI GCNGC 6 cut(s) 396, 419, 615, 618, 621, 624
FokI GGATG 3 cut(s) 554, 650, 742
FriOI GRGCYC 1 cut(s) 808
Fsp4HI GCNGC 6 cut(s) 396, 419, 615, 618, 621, 624
FspBI CTAG 3 cut(s) 8, 189, 408
GluI GCNGC 6 cut(s) 396, 419, 615, 618, 621, 624
GsuI CTGGAG 1 cut(s) 197
HapII CCGG 3 cut(s) 281, 302, 794
Hin1II CATG 5 cut(s) 71, 83, 379, 487, 752
HindIII AAGCTT 1 cut(s) 115
HinfI GANTC 7 cut(s) 152, 217, 317, 386, 443, 467, 559
HpaII CCGG 3 cut(s) 281, 302, 794
HphI GGTGA 2 cut(s) 381, 560
Hpy166II GTNNAC 2 cut(s) 250, 405
Hpy188I TCNGA 8 cut(s) 161, 183, 292, 442, 448, 493, 678, 715
Hpy188III TCNNGA 9 cut(s) 8, 50, 68, 80, 149, 214, 281, 346, 703
Hpy8I GTNNAC 2 cut(s) 250, 405
Hpy99I CGWCG 1 cut(s) 331
HpyAV CCTTC 5 cut(s) 349, 352, 443, 539, 565
HpyCH4III ACNGT 2 cut(s) 125, 659
HpyCH4V TGCA 4 cut(s) 614, 623, 752, 836
HpyF10VI GCNNNNNNNGC 2 cut(s) 620, 623
HpyF3I CTNAG 2 cut(s) 445, 695
Hsp92II CATG 5 cut(s) 71, 83, 379, 487, 752
Kpn2I TCCGGA 1 cut(s) 280
Kzo9I GATC 9 cut(s) 4, 58, 76, 185, 259, 277, 480, 488, 690
LmnI GCTCC 1 cut(s) 590
Lsp1109I GCAGC 5 cut(s) 407, 604, 607, 626, 635
LweI GCATC 2 cut(s) 672, 823
MaeI CTAG 3 cut(s) 8, 189, 408
MaeIII GTNAC 2 cut(s) 85, 509
MalI GATC 9 cut(s) 6, 60, 78, 187, 261, 279, 482, 490, 692
MboI GATC 9 cut(s) 4, 58, 76, 185, 259, 277, 480, 488, 690
MboII GAAGA 9 cut(s) 23, 83, 103, 167, 512, 580, 631, 634, 782
MflI RGATCY 4 cut(s) 4, 185, 277, 690
MhlI GDGCHC 1 cut(s) 808
MluCI AATT 3 cut(s) 144, 365, 585
MlyI GAGTC 3 cut(s) 326, 437, 476
MmeI TCCRAC 2 cut(s) 139, 656
MroI TCCGGA 1 cut(s) 280
MseI TTAA 1 cut(s) 579
MspA1I CMGCKG 1 cut(s) 617
MspI CCGG 3 cut(s) 281, 302, 794
MspR9I CCNGG 2 cut(s) 275, 302
MvaI CCWGG 1 cut(s) 275
MwoI GCNNNNNNNGC 2 cut(s) 620, 623
NciI CCSGG 1 cut(s) 302
NdeI CATATG 1 cut(s) 632
NdeII GATC 9 cut(s) 4, 58, 76, 185, 259, 277, 480, 488, 690
NlaIII CATG 5 cut(s) 71, 83, 379, 487, 752
NlaIV GGNNCC 5 cut(s) 198, 234, 279, 294, 701
NmeAIII GCCGAG 1 cut(s) 357
NmuCI GTSAC 1 cut(s) 509
NspI RCATGY 1 cut(s) 752
PagI TCATGA 2 cut(s) 67, 79
PfeI GAWTC 4 cut(s) 152, 217, 386, 559
PflFI GACNNNGTC 1 cut(s) 316
PkrI GCNGC 6 cut(s) 397, 420, 616, 619, 622, 625
PleI GAGTC 3 cut(s) 325, 437, 475
PpsI GAGTC 3 cut(s) 325, 437, 475
Psp124BI GAGCTC 1 cut(s) 808
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 5 cut(s) 198, 234, 279, 294, 701
PspPI GGNCC 1 cut(s) 196
PstI CTGCAG 1 cut(s) 625
PstNI CAGNNNCTG 1 cut(s) 620
PsuI RGATCY 4 cut(s) 4, 185, 277, 690
PsyI GACNNNGTC 1 cut(s) 316
PvuII CAGCTG 1 cut(s) 617
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
SacI GAGCTC 1 cut(s) 808
SaqAI TTAA 1 cut(s) 579
SatI GCNGC 6 cut(s) 396, 419, 615, 618, 621, 624
Sau3AI GATC 9 cut(s) 4, 58, 76, 185, 259, 277, 480, 488, 690
Sau96I GGNCC 1 cut(s) 196
SchI GAGTC 3 cut(s) 326, 437, 476
ScrFI CCNGG 2 cut(s) 275, 302
SduI GDGCHC 1 cut(s) 808
SfaNI GCATC 2 cut(s) 672, 823
SfcI CTRYAG 1 cut(s) 621
SinI GGWCC 1 cut(s) 196
SmlI CTYRAG 1 cut(s) 514
SmoI CTYRAG 1 cut(s) 514
SpeI ACTAGT 1 cut(s) 407
Sse9I AATT 3 cut(s) 144, 365, 585
SsiI CCGC 3 cut(s) 108, 419, 727
SspMI CTAG 3 cut(s) 8, 189, 408
SstI GAGCTC 1 cut(s) 808
StyD4I CCNGG 2 cut(s) 273, 300
StyI CCWWGG 2 cut(s) 646, 667
TaaI ACNGT 2 cut(s) 125, 659
TaqI TCGA 3 cut(s) 51, 120, 353
TaqII GACCGA 1 cut(s) 53
TasI AATT 3 cut(s) 144, 365, 585
TauI GCSGC 1 cut(s) 421
TfiI GAWTC 4 cut(s) 152, 217, 386, 559
Tru1I TTAA 1 cut(s) 579
Tru9I TTAA 1 cut(s) 579
TscAI CASTG 2 cut(s) 130, 514
TseFI GTSAC 1 cut(s) 509
TseI GCWGC 5 cut(s) 395, 614, 617, 620, 623
Tsp45I GTSAC 1 cut(s) 509
TspGWI ACGGA 2 cut(s) 315, 329
TspRI CASTG 2 cut(s) 130, 514
Tth111I GACNNNGTC 1 cut(s) 316
VpaK11BI GGWCC 1 cut(s) 196
XapI RAATTY 1 cut(s) 365
XbaI TCTAGA 1 cut(s) 7
XceI RCATGY 1 cut(s) 752
XspI CTAG 3 cut(s) 8, 189, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.