Rw3G029280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0009971
Physical Location & Seq
Forward (+)
44941679 .. 44943200
1522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G029280.1

Sequence Viewer

Length: 921 bp
ATGGATCTTGATGAGTGGGAATACCTCCCTGATGATGCTTTTCTTGATTTCCATGAAGAAAGTGAGAAGAAGGTCTTCTTTAGCAAGCGCTATTTCGATTCCAAAAGTGTTTTCAATATGTACCACGACTACTGCATAATCCAATCACCCAACTCTTCTAGTTCTAAGAAACTAGTTGCCACCGATCAAGTAGCTCCTGCTGTGCCTCCTAATCAACTTTCTGTTCCTGTTCAAATTCAACTGCTTCCTCCACCAAGCTTTTTCAGATCCACACAATCACCAGATGAAGAAAAGCAAGAGGCTCTTGTGCCAGTTTCAGCAGCAGCTGTTGTTACTGGTACTACAGGAGCAGGGGGAGGAGGAGGAGGAGGTGAAGGTGAAGGTGATCAAGACCCACTACTCTCCCAAGTTTACTTCAAGAAAACCACTTGGGAACCCGAATTTGTCGACATGAAAATGGACTCGCCAAAGTCTCCTACCAGCAGAGGAGGATTAGGATCAGGATTTGTGCATCAAACTAGTAGTGATTCTACTGCTGCTGCTGGAGGAGCCAAGTTTCAGTTTGATGATTATAATGGTGAGCCCAAGGTTAGCTCTCCAAGAATGAAAACCAACAAAGAGGAGGATGAACAAGGACAGAGGCAGAACAAAAACATCTGGAAGTTGAGCTTCACTGGAATTGGAGCTATTTGCTCTTTTGGTTTTGCTGCAGCTACCATTTGTATTCTGTTTTTGGGTAGCCACCAAAGAAACAACCAAAACCACAAACACTTCCAGATTTACACTGATGACAACAAGAGGATTAAGGAGGTGGTTCAGCGAGCAACCAAATTGAATGAAGCATTTTCAGCAGTGAGAGGAGGGGTACCTCTAACCAGAGCTCACATAACATCTGGAGGTTACTATACTGGTGCTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

306

Amino Acids

33.51

Weight (kDa)

5.69

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6821 PF20705 129 - 304 3.5e-52 Family of unknown function (DUF6821)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009971)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03870 AT3G03870 AT5G18130 AT5G18130
fragaria_vesca FvH4_1g28230
malus_domestica MD12G1005100.v1.1 MD14G1003600.v1.1
prunus_persica Prupe.7G006100_v2.0.a1 Prupe.7G006100_v2.0.a1
pyrus_communis pycom12g00420 pycom14g00160
rosa_chinensis RchiOBHm_Chr3g0497011
rosa_laevigata RLG00000022489
rosa_multiflora Rmu_sc0000438.1_g000011
rosa_roxburghii Rroxscaffold_6G00388520
rosa_rugosa Rorug03G0288900
rosa_samantha Rh3AG333100 Rh3BG370400 Rh3CG367300 Rh3DG368600
rosa_wichuraiana Rw3G029280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 573
Acc65I GGTACC 1 cut(s) 865
AccB1I GGYRCC 1 cut(s) 865
AccI GTMKAC 1 cut(s) 447
AclWI GGATC 3 cut(s) 12, 261, 505
AcsI RAATTY 2 cut(s) 234, 440
AfaI GTAC 3 cut(s) 122, 340, 867
AfeI AGCGCT 1 cut(s) 89
AgsI TTSAA 5 cut(s) 115, 233, 239, 418, 835
AhlI ACTAGT 2 cut(s) 172, 518
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AluBI AGCT 8 cut(s) 194, 258, 326, 594, 669, 686, 713, 881
AluI AGCT 8 cut(s) 194, 258, 326, 594, 669, 686, 713, 881
Alw21I GWGCWC 2 cut(s) 883, 916
Alw26I GTCTC 1 cut(s) 477
AlwI GGATC 3 cut(s) 12, 261, 505
AlwNI CAGNNNCTG 1 cut(s) 326
Aor51HI AGCGCT 1 cut(s) 89
ApeKI GCWGC 6 cut(s) 320, 323, 536, 539, 707, 710
ApoI RAATTY 2 cut(s) 234, 440
Asp700I GAANNNNTTC 1 cut(s) 74
Asp718I GGTACC 1 cut(s) 865
AspLEI GCGC 1 cut(s) 90
AsuHPI GGTGA 6 cut(s) 138, 270, 383, 389, 395, 590
BanI GGYRCC 1 cut(s) 865
BanII GRGCYC 2 cut(s) 585, 883
BbsI GAAGAC 1 cut(s) 67
Bbv12I GWGCWC 2 cut(s) 883, 916
BbvI GCAGC 6 cut(s) 332, 335, 523, 526, 694, 722
BclI TGATCA 1 cut(s) 385
BcoDI GTCTC 1 cut(s) 477
BcuI ACTAGT 2 cut(s) 172, 518
BfaI CTAG 3 cut(s) 159, 173, 519
BfmI CTRYAG 2 cut(s) 342, 708
BfoI RGCGCY 1 cut(s) 91
BisI GCNGC 6 cut(s) 321, 324, 537, 540, 708, 711
BlsI GCNGC 6 cut(s) 322, 325, 538, 541, 709, 712
BmiI GGNNCC 3 cut(s) 435, 550, 867
BmsI GCATC 2 cut(s) 25, 520
BpiI GAAGAC 1 cut(s) 67
BpmI CTGGAG 2 cut(s) 564, 915
BsaBI GATNNNNATC 1 cut(s) 496
BsaJI CCNNGG 1 cut(s) 585
Bse1I ACTGG 4 cut(s) 311, 340, 679, 913
Bse8I GATNNNNATC 1 cut(s) 496
BseDI CCNNGG 1 cut(s) 585
BseGI GGATG 1 cut(s) 631
BseJI GATNNNNATC 1 cut(s) 496
BseNI ACTGG 4 cut(s) 311, 340, 679, 913
BseRI GAGGAG 8 cut(s) 372, 375, 378, 381, 501, 561, 635, 873
BseXI GCAGC 6 cut(s) 332, 335, 523, 526, 694, 722
BshNI GGYRCC 1 cut(s) 865
BsiHKAI GWGCWC 2 cut(s) 883, 916
BsmAI GTCTC 1 cut(s) 477
Bsp1286I GDGCHC 3 cut(s) 585, 883, 916
Bsp143I GATC 5 cut(s) 4, 184, 266, 385, 497
BspLI GGNNCC 3 cut(s) 435, 550, 867
BspMAI CTGCAG 1 cut(s) 712
BspPI GGATC 3 cut(s) 12, 261, 505
BspT107I GGYRCC 1 cut(s) 865
BsrI ACTGG 4 cut(s) 311, 340, 679, 913
BssECI CCNNGG 1 cut(s) 585
BssMI GATC 5 cut(s) 4, 184, 266, 385, 497
BssT1I CCWWGG 1 cut(s) 585
Bst6I CTCTTC 1 cut(s) 160
BstC8I GCNNGC 2 cut(s) 86, 822
BstDEI CTNAG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 631
BstH2I RGCGCY 1 cut(s) 91
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 5 cut(s) 7, 187, 269, 388, 500
BstMAI GTCTC 1 cut(s) 477
BstMBI GATC 5 cut(s) 4, 184, 266, 385, 497
BstMWI GCNNNNNNNGC 2 cut(s) 548, 848
BstSFI CTRYAG 2 cut(s) 342, 708
BstV1I GCAGC 6 cut(s) 332, 335, 523, 526, 694, 722
BstV2I GAAGAC 1 cut(s) 67
BstX2I RGATCY 2 cut(s) 4, 266
BstYI RGATCY 2 cut(s) 4, 266
BtsCI GGATG 1 cut(s) 631
BtsI GCAGTG 1 cut(s) 858
BtsIMutI CAGTG 3 cut(s) 672, 783, 858
Cac8I GCNNGC 2 cut(s) 86, 822
CaiI CAGNNNCTG 1 cut(s) 326
CfoI GCGC 1 cut(s) 90
Csp6I GTAC 3 cut(s) 121, 339, 866
CviAII CATG 2 cut(s) 53, 451
CviQI GTAC 3 cut(s) 121, 339, 866
DdeI CTNAG 1 cut(s) 165
DpnI GATC 5 cut(s) 6, 186, 268, 387, 499
DpnII GATC 5 cut(s) 4, 184, 266, 385, 497
Eam1104I CTCTTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 160
Ecl136II GAGCTC 1 cut(s) 881
Eco130I CCWWGG 1 cut(s) 585
Eco24I GRGCYC 2 cut(s) 585, 883
Eco47III AGCGCT 1 cut(s) 89
Eco53kI GAGCTC 1 cut(s) 881
EcoICRI GAGCTC 1 cut(s) 881
EcoT14I CCWWGG 1 cut(s) 585
EcoT38I GRGCYC 2 cut(s) 585, 883
ErhI CCWWGG 1 cut(s) 585
FaeI CATG 2 cut(s) 56, 454
FaiI YATR 8 cut(s) 54, 119, 137, 452, 573, 887, 906, 919
FalI AAGNNNNNCTT 8 cut(s) 59, 91, 62, 94, 288, 320, 653, 685
FatI CATG 2 cut(s) 52, 450
FbaI TGATCA 1 cut(s) 385
FblI GTMKAC 1 cut(s) 447
Fnu4HI GCNGC 6 cut(s) 321, 324, 537, 540, 708, 711
FokI GGATG 1 cut(s) 638
FriOI GRGCYC 2 cut(s) 585, 883
Fsp4HI GCNGC 6 cut(s) 321, 324, 537, 540, 708, 711
FspBI CTAG 3 cut(s) 159, 173, 519
GlaI GCGC 1 cut(s) 89
GluI GCNGC 6 cut(s) 321, 324, 537, 540, 708, 711
GsuI CTGGAG 2 cut(s) 564, 915
HaeII RGCGCY 1 cut(s) 91
HhaI GCGC 1 cut(s) 90
Hin1II CATG 2 cut(s) 56, 454
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HindIII AAGCTT 1 cut(s) 256
HinfI GANTC 3 cut(s) 98, 461, 527
HphI GGTGA 6 cut(s) 138, 270, 383, 389, 395, 590
Hpy166II GTNNAC 2 cut(s) 412, 448
Hpy188I TCNGA 1 cut(s) 266
Hpy188III TCNNGA 8 cut(s) 8, 44, 389, 418, 501, 658, 775, 894
Hpy8I GTNNAC 2 cut(s) 412, 448
HpyAV CCTTC 3 cut(s) 64, 368, 374
HpyCH4V TGCA 3 cut(s) 135, 511, 710
HpyF10VI GCNNNNNNNGC 2 cut(s) 548, 848
HpyF3I CTNAG 1 cut(s) 165
Hsp92II CATG 2 cut(s) 56, 454
HspAI GCGC 1 cut(s) 88
KpnI GGTACC 1 cut(s) 869
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 5 cut(s) 4, 184, 266, 385, 497
LmnI GCTCC 4 cut(s) 199, 347, 548, 683
Lsp1109I GCAGC 6 cut(s) 332, 335, 523, 526, 694, 722
LweI GCATC 2 cut(s) 25, 520
MaeI CTAG 3 cut(s) 159, 173, 519
MaeIII GTNAC 2 cut(s) 331, 899
MalI GATC 5 cut(s) 6, 186, 268, 387, 499
MboI GATC 5 cut(s) 4, 184, 266, 385, 497
MboII GAAGA 5 cut(s) 67, 68, 79, 147, 299
MflI RGATCY 2 cut(s) 4, 266
MhlI GDGCHC 3 cut(s) 585, 883, 916
MluCI AATT 4 cut(s) 234, 440, 678, 830
MlyI GAGTC 1 cut(s) 455
MroXI GAANNNNTTC 1 cut(s) 74
MseI TTAA 1 cut(s) 804
MslI CAYNNNNRTG 1 cut(s) 455
MspA1I CMGCKG 1 cut(s) 326
MwoI GCNNNNNNNGC 2 cut(s) 548, 848
NdeII GATC 5 cut(s) 4, 184, 266, 385, 497
NlaIII CATG 2 cut(s) 56, 454
NlaIV GGNNCC 3 cut(s) 435, 550, 867
PdmI GAANNNNTTC 1 cut(s) 74
PfeI GAWTC 2 cut(s) 98, 527
PkrI GCNGC 6 cut(s) 322, 325, 538, 541, 709, 712
PleI GAGTC 1 cut(s) 455
PpsI GAGTC 1 cut(s) 455
PsiI TTATAA 1 cut(s) 573
Psp124BI GAGCTC 1 cut(s) 883
PspN4I GGNNCC 3 cut(s) 435, 550, 867
PstI CTGCAG 1 cut(s) 712
PstNI CAGNNNCTG 1 cut(s) 326
PsuI RGATCY 2 cut(s) 4, 266
PvuII CAGCTG 1 cut(s) 326
RsaI GTAC 3 cut(s) 122, 340, 867
RsaNI GTAC 3 cut(s) 121, 339, 866
RseI CAYNNNNRTG 1 cut(s) 455
SacI GAGCTC 1 cut(s) 883
SalI GTCGAC 1 cut(s) 446
SaqAI TTAA 1 cut(s) 804
SatI GCNGC 6 cut(s) 321, 324, 537, 540, 708, 711
Sau3AI GATC 5 cut(s) 4, 184, 266, 385, 497
SchI GAGTC 1 cut(s) 455
SduI GDGCHC 3 cut(s) 585, 883, 916
SfaNI GCATC 2 cut(s) 25, 520
SfcI CTRYAG 2 cut(s) 342, 708
SmiMI CAYNNNNRTG 1 cut(s) 455
SpeI ACTAGT 2 cut(s) 172, 518
Sse9I AATT 4 cut(s) 234, 440, 678, 830
SspMI CTAG 3 cut(s) 159, 173, 519
SstI GAGCTC 1 cut(s) 883
StyI CCWWGG 1 cut(s) 585
TaqI TCGA 2 cut(s) 96, 447
TasI AATT 4 cut(s) 234, 440, 678, 830
TfiI GAWTC 2 cut(s) 98, 527
Tru1I TTAA 1 cut(s) 804
Tru9I TTAA 1 cut(s) 804
TscAI CASTG 3 cut(s) 679, 790, 858
TseI GCWGC 6 cut(s) 320, 323, 536, 539, 707, 710
TspDTI ATGAA 6 cut(s) 69, 300, 467, 620, 642, 852
TspRI CASTG 3 cut(s) 679, 790, 858
XapI RAATTY 2 cut(s) 234, 440
XmiI GTMKAC 1 cut(s) 447
XmnI GAANNNNTTC 1 cut(s) 74
XspI CTAG 3 cut(s) 159, 173, 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.