AT3G04020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009308
Physical Location & Seq
Forward (+)
1040331 .. 1042547
2217 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G04020.3

Sequence Viewer

Length: 915 bp
ATGATGAAAGGAAGCAAGGCGAATCTCTCTGCCTTAGCGGAGAAATGCAAAACTGTAATCGTTTCGAACTGGCAAGGGTACCTAAATACCGTCAAACCTGAAGATAAAGCTAGTATAATACATACTTCAAAGATTAAGTATGTGATGAGAAGAGGAAAGCCATATCTCTGGGTACCAGAAAGTGAACCACACAATGTCAACATAATGTTTGATGAACGTGGATCCTTTTCTATTGCCCATCCGTATCCTGGTCCCCTTGCAGCTTTATTCAAGTCTATAGGAAAGCTTCCAGAAAGGGTTGCTTTTACTGGAGAGATTGTTCCTGTTAAAGAGAAAAGGGTTGATGCGGTGAAGAAATATGTCGAGGAAGCTATACAGTCAGAGATGAAAGCGATTAGCGATACCCCAAATTCTGTCCGTAGTATTTTGAATTCTTCCGATCAGATGTATGCCTCCCGGTGTGACAGTCTTAGAGCCCTGATCAATGATGCAAAGGAAAAATACGTTATCTATAAGTTCGTTCCAAGCTCATGTATGTTTATTGACCCAAATGGTACGAAAGAAATAGACTTGAAGGTTTTGGAACTGTCAAAACCAGATCCATTAGGGACTTGGTCGACAAAACTTGTGGATGGAATCAATAAGAACGAATCAAGAAGACGAGCTTTGATTCTTTTCTGTTTATATTTTCTTGATATAAACGCAAGGGATGCTTATATGGTATCAGTGGATAGGAAAGGTTTCCACTTGTTGGGGAAGGTACCGAGTGAACAAGAAGCTGGAGATGAGTATCAGTGGAGAGAGTTTAGGTTTGAGTTTGAAGAAGAGGTGAAAGACGTTGAAGCTTTTTGCCACCAACTTGTGGAAATGGAACAAGAGGTTGTAAGCAAGTTTACTGACCATACCGGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2470 Pyrid_oxidase_2

Protein Analysis

304

Amino Acids

34.69

Weight (kDa)

6.62

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2470 PF10615 148 - 222 3.2e-07 Domain of unknown function (DUF2470)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 3 cut(s) 78, 172, 760
AccB1I GGYRCC 3 cut(s) 78, 172, 760
AccB7I CCANNNNNTGG 2 cut(s) 751, 862
AccI GTMKAC 1 cut(s) 617
AciI CCGC 2 cut(s) 38, 347
AclWI GGATC 3 cut(s) 216, 229, 593
AcsI RAATTY 2 cut(s) 409, 430
AcuI CTGAAG 1 cut(s) 120
AfaI GTAC 4 cut(s) 80, 174, 556, 762
AfiI CCNNNNNNNGG 3 cut(s) 248, 751, 862
AgeI ACCGGT 1 cut(s) 905
AgsI TTSAA 6 cut(s) 129, 271, 430, 574, 821, 842
AjnI CCWGG 1 cut(s) 247
AloI GAACNNNNNNTCC 2 cut(s) 303, 335
AluBI AGCT 8 cut(s) 110, 263, 286, 371, 528, 665, 779, 845
AluI AGCT 8 cut(s) 110, 263, 286, 371, 528, 665, 779, 845
AlwI GGATC 3 cut(s) 216, 229, 593
ApeKI GCWGC 1 cut(s) 260
ApoI RAATTY 2 cut(s) 409, 430
AsiGI ACCGGT 1 cut(s) 905
Asp700I GAANNNNTTC 1 cut(s) 740
Asp718I GGTACC 3 cut(s) 78, 172, 760
AspS9I GGNCC 1 cut(s) 251
AsuC2I CCSGG 1 cut(s) 457
AsuHPI GGTGA 2 cut(s) 361, 841
AsuII TTCGAA 1 cut(s) 65
AvaII GGWCC 1 cut(s) 251
BamHI GGATCC 1 cut(s) 221
BanI GGYRCC 3 cut(s) 78, 172, 760
BanII GRGCYC 1 cut(s) 478
BbsI GAAGAC 1 cut(s) 664
BbvI GCAGC 1 cut(s) 272
BccI CCATC 2 cut(s) 246, 626
BciT130I CCWGG 1 cut(s) 249
BciVI GTATCC 1 cut(s) 255
BclI TGATCA 1 cut(s) 480
BcnI CCSGG 1 cut(s) 457
BfaI CTAG 1 cut(s) 111
BfmI CTRYAG 1 cut(s) 276
BfuI GTATCC 1 cut(s) 255
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
Bme1390I CCNGG 2 cut(s) 249, 457
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 5 cut(s) 80, 174, 223, 253, 762
BmrFI CCNGG 2 cut(s) 249, 457
BmsI GCATC 3 cut(s) 334, 478, 700
BpiI GAAGAC 1 cut(s) 664
BpmI CTGGAG 2 cut(s) 330, 801
Bpu10I CCTNAGC 1 cut(s) 34
Bpu14I TTCGAA 1 cut(s) 65
BpuMI CCSGG 1 cut(s) 457
BsaBI GATNNNNATC 1 cut(s) 789
BsaWI WCCGGW 1 cut(s) 905
BsaXI ACNNNNNCTCC 2 cut(s) 303, 333
Bsc4I CCNNNNNNNGG 3 cut(s) 248, 751, 862
Bse118I RCCGGY 1 cut(s) 905
Bse1I ACTGG 2 cut(s) 74, 313
Bse8I GATNNNNATC 1 cut(s) 789
BseBI CCWGG 1 cut(s) 249
BseGI GGATG 3 cut(s) 238, 637, 715
BseJI GATNNNNATC 1 cut(s) 789
BseLI CCNNNNNNNGG 3 cut(s) 248, 751, 862
BseNI ACTGG 2 cut(s) 74, 313
BseXI GCAGC 1 cut(s) 272
BshNI GGYRCC 3 cut(s) 78, 172, 760
BshTI ACCGGT 1 cut(s) 905
BsiSI CCGG 2 cut(s) 457, 906
BslFI GGGAC 2 cut(s) 237, 622
BslI CCNNNNNNNGG 3 cut(s) 248, 751, 862
BsmFI GGGAC 2 cut(s) 237, 622
Bsp119I TTCGAA 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 478
Bsp143I GATC 4 cut(s) 221, 439, 480, 598
BspACI CCGC 2 cut(s) 38, 347
BspLI GGNNCC 5 cut(s) 80, 174, 223, 253, 762
BspPI GGATC 3 cut(s) 216, 229, 593
BspT104I TTCGAA 1 cut(s) 65
BspT107I GGYRCC 3 cut(s) 78, 172, 760
BsrFI RCCGGY 1 cut(s) 905
BsrI ACTGG 2 cut(s) 74, 313
BssAI RCCGGY 1 cut(s) 905
BssMI GATC 4 cut(s) 221, 439, 480, 598
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 5 cut(s) 55, 91, 378, 467, 588
Bst6I CTCTTC 2 cut(s) 145, 819
BstAPI GCANNNNNTGC 1 cut(s) 710
BstBI TTCGAA 1 cut(s) 65
BstDEI CTNAG 2 cut(s) 34, 470
BstF5I GGATG 3 cut(s) 238, 637, 715
BstKTI GATC 4 cut(s) 224, 442, 483, 601
BstMBI GATC 4 cut(s) 221, 439, 480, 598
BstMWI GCNNNNNNNGC 1 cut(s) 710
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 2 cut(s) 247, 455
BstSFI CTRYAG 1 cut(s) 276
BstV1I GCAGC 1 cut(s) 272
BstV2I GAAGAC 1 cut(s) 664
BstX2I RGATCY 2 cut(s) 221, 598
BstXI CCANNNNNNTGG 1 cut(s) 168
BstYI RGATCY 2 cut(s) 221, 598
BsuI GTATCC 1 cut(s) 255
BtsCI GGATG 3 cut(s) 238, 637, 715
BtsIMutI CAGTG 2 cut(s) 732, 800
Cfr10I RCCGGY 1 cut(s) 905
Cfr13I GGNCC 1 cut(s) 251
Csp6I GTAC 4 cut(s) 79, 173, 555, 761
CspAI ACCGGT 1 cut(s) 905
CspCI CAANNNNNGTGG 2 cut(s) 609, 644
CviAII CATG 1 cut(s) 531
CviQI GTAC 4 cut(s) 79, 173, 555, 761
DdeI CTNAG 2 cut(s) 34, 470
DpnI GATC 4 cut(s) 223, 441, 482, 600
DpnII GATC 4 cut(s) 221, 439, 480, 598
Eam1104I CTCTTC 2 cut(s) 145, 819
EarI CTCTTC 2 cut(s) 145, 819
Eco24I GRGCYC 1 cut(s) 478
Eco47I GGWCC 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 120
EcoRI GAATTC 1 cut(s) 430
EcoRII CCWGG 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 478
FaeI CATG 1 cut(s) 534
FalI AAGNNNNNCTT 6 cut(s) 286, 318, 649, 681, 697, 729
FaqI GGGAC 2 cut(s) 237, 622
FatI CATG 1 cut(s) 530
FbaI TGATCA 1 cut(s) 480
FblI GTMKAC 1 cut(s) 617
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 3 cut(s) 225, 644, 722
FriOI GRGCYC 1 cut(s) 478
Fsp4HI GCNGC 1 cut(s) 261
FspBI CTAG 1 cut(s) 111
GluI GCNGC 1 cut(s) 261
GsuI CTGGAG 2 cut(s) 330, 801
HapII CCGG 2 cut(s) 457, 906
Hin1II CATG 1 cut(s) 534
HincII GTYRAC 2 cut(s) 199, 618
HindII GTYRAC 2 cut(s) 199, 618
HindIII AAGCTT 2 cut(s) 284, 843
HinfI GANTC 4 cut(s) 22, 636, 650, 670
HpaII CCGG 2 cut(s) 457, 906
HphI GGTGA 2 cut(s) 361, 841
Hpy166II GTNNAC 5 cut(s) 185, 199, 618, 770, 894
Hpy188I TCNGA 3 cut(s) 382, 439, 444
Hpy188III TCNNGA 3 cut(s) 290, 654, 692
Hpy8I GTNNAC 5 cut(s) 185, 199, 618, 770, 894
HpyAV CCTTC 2 cut(s) 568, 751
HpyCH4III ACNGT 5 cut(s) 55, 91, 378, 467, 588
HpyCH4IV ACGT 3 cut(s) 217, 504, 837
HpyCH4V TGCA 3 cut(s) 48, 260, 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 710
HpyF3I CTNAG 2 cut(s) 34, 470
HpySE526I ACGT 3 cut(s) 217, 504, 837
Hsp92II CATG 1 cut(s) 534
KpnI GGTACC 3 cut(s) 82, 176, 764
Ksp22I TGATCA 1 cut(s) 480
Kzo9I GATC 4 cut(s) 221, 439, 480, 598
Lsp1109I GCAGC 1 cut(s) 272
LweI GCATC 3 cut(s) 334, 478, 700
MaeI CTAG 1 cut(s) 111
MaeII ACGT 3 cut(s) 217, 504, 837
MaeIII GTNAC 1 cut(s) 461
MalI GATC 4 cut(s) 223, 441, 482, 600
MboI GATC 4 cut(s) 221, 439, 480, 598
MboII GAAGA 7 cut(s) 113, 162, 364, 426, 669, 833, 836
MflI RGATCY 2 cut(s) 221, 598
MhlI GDGCHC 1 cut(s) 478
MluCI AATT 2 cut(s) 409, 430
MnlI CCTC 5 cut(s) 146, 358, 463, 820, 871
MroXI GAANNNNTTC 1 cut(s) 740
MseI TTAA 2 cut(s) 135, 327
MspI CCGG 2 cut(s) 457, 906
MspR9I CCNGG 2 cut(s) 249, 457
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 1 cut(s) 710
NciI CCSGG 1 cut(s) 457
NdeII GATC 4 cut(s) 221, 439, 480, 598
NlaIII CATG 1 cut(s) 534
NlaIV GGNNCC 5 cut(s) 80, 174, 223, 253, 762
NmuCI GTSAC 1 cut(s) 461
NspV TTCGAA 1 cut(s) 65
PdmI GAANNNNTTC 1 cut(s) 740
PfeI GAWTC 4 cut(s) 22, 636, 650, 670
PflFI GACNNNGTC 1 cut(s) 613
PflMI CCANNNNNTGG 2 cut(s) 751, 862
PinAI ACCGGT 1 cut(s) 905
PkrI GCNGC 1 cut(s) 262
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 5 cut(s) 80, 174, 223, 253, 762
PspPI GGNCC 1 cut(s) 251
PsuI RGATCY 2 cut(s) 221, 598
PsyI GACNNNGTC 1 cut(s) 613
RsaI GTAC 4 cut(s) 80, 174, 556, 762
RsaNI GTAC 4 cut(s) 79, 173, 555, 761
SalI GTCGAC 1 cut(s) 616
SaqAI TTAA 2 cut(s) 135, 327
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 4 cut(s) 221, 439, 480, 598
Sau96I GGNCC 1 cut(s) 251
ScrFI CCNGG 2 cut(s) 249, 457
SduI GDGCHC 1 cut(s) 478
SfaNI GCATC 3 cut(s) 334, 478, 700
SfcI CTRYAG 1 cut(s) 276
SfuI TTCGAA 1 cut(s) 65
SinI GGWCC 1 cut(s) 251
Sse9I AATT 2 cut(s) 409, 430
SsiI CCGC 2 cut(s) 38, 347
SspMI CTAG 1 cut(s) 111
StyD4I CCNGG 2 cut(s) 247, 455
TaaI ACNGT 5 cut(s) 55, 91, 378, 467, 588
TaiI ACGT 3 cut(s) 220, 507, 840
TaqI TCGA 3 cut(s) 65, 363, 617
TasI AATT 2 cut(s) 409, 430
TfiI GAWTC 4 cut(s) 22, 636, 650, 670
Tru1I TTAA 2 cut(s) 135, 327
Tru9I TTAA 2 cut(s) 135, 327
TscAI CASTG 2 cut(s) 732, 800
TseFI GTSAC 1 cut(s) 461
TseI GCWGC 1 cut(s) 260
Tsp45I GTSAC 1 cut(s) 461
TspDTI ATGAA 3 cut(s) 20, 228, 401
TspGWI ACGGA 2 cut(s) 231, 407
TspRI CASTG 2 cut(s) 732, 800
Tth111I GACNNNGTC 1 cut(s) 613
Van91I CCANNNNNTGG 2 cut(s) 751, 862
VpaK11BI GGWCC 1 cut(s) 251
XapI RAATTY 2 cut(s) 409, 430
XcmI CCANNNNNNNNNTGG 2 cut(s) 245, 609
XmiI GTMKAC 1 cut(s) 617
XmnI GAANNNNTTC 1 cut(s) 740
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.