Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0009308

Physical Location & Seq

Genomic Coordinates Reverse (-)

53911823 .. 53920058

Gene Structure 8236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G029860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGATCAAAGGATTGGAGTCTACGGTAATAGTGTCGTCGTACTCGTGGAGCCCGGAGGCTAGACTATATGTAAGAAAACGTGAAAAAGTGTGGTGCTCGGAGGCTAGACCATATCGGATAACGCCTGGCGGGAGAAGTTGGGCGGAGCGGGGCTCGCTGGGTCTTGAGAGAGCTGCCGCCGGCGGCCTGATGCAACGAAGAAGAAAGAGGAGTGACACGAGATGTATAGTGGTTCGCCTCCGCATGAGCGGGAGACTACGTCCACTTGAATGTTTAACTATGTGTGCTCAGTCTGCAACAAAAGTCCTTAGCGAAGTCATGCTATCGGAACAGACAACAATCAGCACCTCTAGTTATACAGTTTCAAGTGTATTAAGTTCTTCTGACCATAGTCGTACATCGCGGAGTGAAAACCTTAAGGATCTCTTGGAAGGGGATGAAAAGTACATAGTTTATAAGTTCAACCAAAGATCATTCATGTACATTGATGGCAATGGAAGCACTCATGACATTGACCAAGAAGATATAGTGGATCTAAAGCAGATCCCCCCTTTATCTGCTAAGCTTATTGATGGGATAAATCAGAGTGTAGCAAGACGTAGAGCCCTGATGCTTTTTTGTTTGACTTACAAGAATGCCAATGCTAAGGATGCATACATGCTGTCTGTCGAACGCAAGGGATTTGACATATTGAGCAAGGTTGCCGGTCCGTTGTTGAAGGATGGCATATTTACTTTTAAGGAAGAGGCATGTGATGTTGAATCATTCTGCAGTCAACTAGTAGAAATGGAAGAGGATGCTGTTCAGGAGGTTTCAAGCCATAGTGGTTTAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2470 Pyrid_oxidase_2

Protein Analysis

278

Amino Acids

31.22

Weight (kDa)

8.61

Isoelectric Point (pI)

54.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04020 AT3G04020 AT3G04020 AT3G04020
fragaria_vesca	FvH4_7g22120
malus_domestica	MD07G1196400.v1.1
prunus_persica	Prupe.2G233400_v2.0.a1
pyrus_communis	pycom07g18450
rosa_chinensis	RchiOBHm_Chr1g0366511
rosa_laevigata	RLG00000027341
rosa_multiflora	Rmu_co8175244.1_g000001 Rmu_sc0011292.1_g000004
rosa_roxburghii	Rroxscaffold_4G00289860 Rroxscaffold_4G00290120
rosa_rugosa	Rorug01G0330500
rosa_samantha	Rh1AG338500 Rh1BG300000 Rh1CG315100 Rh1DG331800 Rh6AG342400
rosa_wichuraiana	Rw1G029970 Rw6G029860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	456
AccBSI	CCGCTC	2 cut(s)	148, 249
AccI	GTMKAC	1 cut(s)	20
AccII	CGCG	1 cut(s)	403
AciI	CCGC	8 cut(s)	129, 143, 148, 177, 183, 241, 249, 403
AclWI	GGATC	3 cut(s)	429, 538, 540
AfaI	GTAC	4 cut(s)	41, 397, 446, 482
AflII	CTTAAG	1 cut(s)	416
AgsI	TTSAA	6 cut(s)	269, 366, 463, 718, 761, 816
AhlI	ACTAGT	1 cut(s)	778
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	2 cut(s)	173, 565
AluI	AGCT	2 cut(s)	173, 565
Alw21I	GWGCWC	2 cut(s)	98, 289
Alw26I	GTCTC	1 cut(s)	247
AlwI	GGATC	3 cut(s)	429, 538, 540
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	707
AsuC2I	CCSGG	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	707
BanII	GRGCYC	3 cut(s)	53, 155, 607
BauI	CACGAG	2 cut(s)	43, 217
Bbv12I	GWGCWC	2 cut(s)	98, 289
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	3 cut(s)	482, 566, 716
BciT130I	CCWGG	1 cut(s)	126
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	247
BcuI	ACTAGT	1 cut(s)	778
BfaI	CTAG	4 cut(s)	60, 105, 351, 779
BfmI	CTRYAG	1 cut(s)	769
BfrI	CTTAAG	1 cut(s)	416
BisI	GCNGC	3 cut(s)	174, 177, 184
BlpI	GCTNAGC	1 cut(s)	561
BlsI	GCNGC	3 cut(s)	175, 178, 185
Bme1390I	CCNGG	2 cut(s)	53, 126
Bme18I	GGWCC	1 cut(s)	707
BmgT120I	GGNCC	1 cut(s)	707
BmiI	GGNNCC	1 cut(s)	50
BmrFI	CCNGG	2 cut(s)	53, 126
BmsI	GCATC	4 cut(s)	180, 600, 640, 787
BoxI	GACNNNNGTC	1 cut(s)	390
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
Bpu10I	CCTNAGC	2 cut(s)	308, 645
Bpu1102I	GCTNAGC	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	185
BpuMI	CCSGG	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	244, 274
Bse118I	RCCGGY	2 cut(s)	179, 704
Bse3DI	GCAATG	1 cut(s)	499
BseBI	CCWGG	1 cut(s)	126
BseGI	GGATG	4 cut(s)	442, 655, 727, 802
BseMI	GCAATG	1 cut(s)	499
BseMII	CTCAG	1 cut(s)	302
BseRI	GAGGAG	1 cut(s)	223
BseXI	GCAGC	1 cut(s)	160
BseYI	CCCAGC	1 cut(s)	157
Bsh1236I	CGCG	1 cut(s)	403
BshFI	GGCC	1 cut(s)	186
BsiHKAI	GWGCWC	2 cut(s)	98, 289
BsiSI	CCGG	3 cut(s)	53, 180, 705
BsmAI	GTCTC	1 cut(s)	247
BsmI	GAATGC	1 cut(s)	640
BsnI	GGCC	1 cut(s)	186
Bsp1286I	GDGCHC	5 cut(s)	53, 98, 155, 289, 607
Bsp1407I	TGTACA	1 cut(s)	480
Bsp143I	GATC	5 cut(s)	3, 421, 470, 532, 543
Bsp1720I	GCTNAGC	1 cut(s)	561
BspACI	CCGC	8 cut(s)	129, 143, 148, 177, 183, 241, 249, 403
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	1 cut(s)	301
BspFNI	CGCG	1 cut(s)	403
BspHI	TCATGA	1 cut(s)	505
BspLI	GGNNCC	1 cut(s)	50
BspMAI	CTGCAG	1 cut(s)	773
BspPI	GGATC	3 cut(s)	429, 538, 540
BspTI	CTTAAG	1 cut(s)	416
BsrBI	CCGCTC	2 cut(s)	148, 249
BsrDI	GCAATG	1 cut(s)	499
BsrFI	RCCGGY	2 cut(s)	179, 704
BsrGI	TGTACA	1 cut(s)	480
BssAI	RCCGGY	2 cut(s)	179, 704
BssMI	GATC	5 cut(s)	3, 421, 470, 532, 543
BssSI	CACGAG	2 cut(s)	43, 217
Bst2BI	CACGAG	2 cut(s)	43, 217
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	2 cut(s)	25, 361
Bst6I	CTCTTC	2 cut(s)	738, 786
BstAFI	CTTAAG	1 cut(s)	416
BstAUI	TGTACA	1 cut(s)	480
BstC8I	GCNNGC	2 cut(s)	155, 181
BstDEI	CTNAG	4 cut(s)	288, 308, 561, 645
BstF5I	GGATG	4 cut(s)	442, 655, 727, 802
BstFNI	CGCG	1 cut(s)	403
BstKTI	GATC	5 cut(s)	6, 424, 473, 535, 546
BstMAI	GTCTC	1 cut(s)	247
BstMBI	GATC	5 cut(s)	3, 421, 470, 532, 543
BstMWI	GCNNNNNNNGC	4 cut(s)	154, 293, 498, 650
BstNI	CCWGG	1 cut(s)	126
BstNSI	RCATGY	2 cut(s)	661, 753
BstPAI	GACNNNNGTC	1 cut(s)	390
BstSCI	CCNGG	2 cut(s)	51, 124
BstSFI	CTRYAG	1 cut(s)	769
BstUI	CGCG	1 cut(s)	403
BstV1I	GCAGC	1 cut(s)	160
BstX2I	RGATCY	3 cut(s)	421, 532, 543
BstYI	RGATCY	3 cut(s)	421, 532, 543
BsuRI	GGCC	1 cut(s)	186
BtgZI	GCGATG	1 cut(s)	384
BtsCI	GGATG	4 cut(s)	442, 655, 727, 802
Cac8I	GCNNGC	2 cut(s)	155, 181
CciI	TCATGA	1 cut(s)	505
Cfr10I	RCCGGY	2 cut(s)	179, 704
Cfr13I	GGNCC	1 cut(s)	707
CpoI	CGGWCCG	1 cut(s)	707
Csp6I	GTAC	4 cut(s)	40, 396, 445, 481
CspI	CGGWCCG	1 cut(s)	707
CviAII	CATG	7 cut(s)	244, 319, 478, 506, 658, 750, 834
CviJI	RGCY	9 cut(s)	51, 59, 104, 153, 173, 186, 565, 605, 819
CviKI_1	RGCY	9 cut(s)	51, 59, 104, 153, 173, 186, 565, 605, 819
CviQI	GTAC	4 cut(s)	40, 396, 445, 481
DdeI	CTNAG	4 cut(s)	288, 308, 561, 645
DpnI	GATC	5 cut(s)	5, 423, 472, 534, 545
DpnII	GATC	5 cut(s)	3, 421, 470, 532, 543
Eam1104I	CTCTTC	2 cut(s)	738, 786
EarI	CTCTTC	2 cut(s)	738, 786
EciI	GGCGGA	1 cut(s)	158
Eco24I	GRGCYC	3 cut(s)	53, 155, 607
Eco47I	GGWCC	1 cut(s)	707
EcoRII	CCWGG	1 cut(s)	124
EcoT22I	ATGCAT	1 cut(s)	655
EcoT38I	GRGCYC	3 cut(s)	53, 155, 607
FaeI	CATG	7 cut(s)	247, 322, 481, 509, 661, 753, 837
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FatI	CATG	7 cut(s)	243, 318, 477, 505, 657, 749, 833
FauI	CCCGC	3 cut(s)	122, 141, 242
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	20
Fnu4HI	GCNGC	3 cut(s)	174, 177, 184
FokI	GGATG	4 cut(s)	449, 662, 734, 809
FriOI	GRGCYC	3 cut(s)	53, 155, 607
Fsp4HI	GCNGC	3 cut(s)	174, 177, 184
FspBI	CTAG	4 cut(s)	60, 105, 351, 779
GluI	GCNGC	3 cut(s)	174, 177, 184
GsaI	CCCAGC	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	186
HapII	CCGG	3 cut(s)	53, 180, 705
Hin1II	CATG	7 cut(s)	247, 322, 481, 509, 661, 753, 837
HincII	GTYRAC	1 cut(s)	776
HindII	GTYRAC	1 cut(s)	776
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	2 cut(s)	17, 761
HpaII	CCGG	3 cut(s)	53, 180, 705
Hpy166II	GTNNAC	3 cut(s)	21, 263, 776
Hpy188I	TCNGA	5 cut(s)	100, 117, 328, 385, 585
Hpy188III	TCNNGA	3 cut(s)	164, 506, 806
Hpy8I	GTNNAC	3 cut(s)	21, 263, 776
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	425, 712
HpyCH4III	ACNGT	2 cut(s)	25, 361
HpyCH4IV	ACGT	3 cut(s)	79, 259, 598
HpyCH4V	TGCA	4 cut(s)	193, 296, 653, 771
HpyF10VI	GCNNNNNNNGC	4 cut(s)	154, 293, 498, 650
HpyF3I	CTNAG	4 cut(s)	288, 308, 561, 645
HpySE526I	ACGT	3 cut(s)	79, 259, 598
Hsp92II	CATG	7 cut(s)	247, 322, 481, 509, 661, 753, 837
KroI	GCCGGC	1 cut(s)	179
KroNI	GCCGGC	1 cut(s)	181
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	5 cut(s)	3, 421, 470, 532, 543
LmnI	GCTCC	2 cut(s)	48, 145
LpnPI	CCDG	9 cut(s)	66, 111, 138, 143, 193, 200, 620, 718, 791
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	4 cut(s)	180, 600, 640, 787
MaeI	CTAG	4 cut(s)	60, 105, 351, 779
MaeII	ACGT	3 cut(s)	79, 259, 598
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	5 cut(s)	5, 423, 472, 534, 545
MbiI	CCGCTC	2 cut(s)	148, 249
MboI	GATC	5 cut(s)	3, 421, 470, 532, 543
MboII	GAAGA	6 cut(s)	210, 213, 372, 533, 755, 803
MflI	RGATCY	3 cut(s)	421, 532, 543
MhlI	GDGCHC	5 cut(s)	53, 98, 155, 289, 607
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	8 cut(s)	49, 94, 201, 248, 358, 739, 787, 802
Mph1103I	ATGCAT	1 cut(s)	655
MreI	CGCCGGCG	1 cut(s)	179
MroNI	GCCGGC	1 cut(s)	179
MseI	TTAA	4 cut(s)	275, 374, 417, 738
MslI	CAYNNNNRTG	1 cut(s)	268
MspCI	CTTAAG	1 cut(s)	416
MspI	CCGG	3 cut(s)	53, 180, 705
MspR9I	CCNGG	2 cut(s)	53, 126
Mva1269I	GAATGC	1 cut(s)	640
MvaI	CCWGG	1 cut(s)	126
MvnI	CGCG	1 cut(s)	403
MwoI	GCNNNNNNNGC	4 cut(s)	154, 293, 498, 650
NaeI	GCCGGC	1 cut(s)	181
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	5 cut(s)	3, 421, 470, 532, 543
NgoMIV	GCCGGC	1 cut(s)	179
NlaIII	CATG	7 cut(s)	247, 322, 481, 509, 661, 753, 837
NlaIV	GGNNCC	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	212
NsiI	ATGCAT	1 cut(s)	655
NspI	RCATGY	2 cut(s)	661, 753
PagI	TCATGA	1 cut(s)	505
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PctI	GAATGC	1 cut(s)	640
PdiI	GCCGGC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	761
PflFI	GACNNNGTC	1 cut(s)	258
PkrI	GCNGC	3 cut(s)	175, 178, 185
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
PshAI	GACNNNNGTC	1 cut(s)	390
PsiI	TTATAA	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	124
PspFI	CCCAGC	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	50
PspPI	GGNCC	1 cut(s)	707
PstI	CTGCAG	1 cut(s)	773
PsuI	RGATCY	3 cut(s)	421, 532, 543
PsyI	GACNNNGTC	1 cut(s)	258
RsaI	GTAC	4 cut(s)	41, 397, 446, 482
RsaNI	GTAC	4 cut(s)	40, 396, 445, 481
RseI	CAYNNNNRTG	1 cut(s)	268
Rsr2I	CGGWCCG	1 cut(s)	707
RsrII	CGGWCCG	1 cut(s)	707
SaqAI	TTAA	4 cut(s)	275, 374, 417, 738
SatI	GCNGC	3 cut(s)	174, 177, 184
Sau3AI	GATC	5 cut(s)	3, 421, 470, 532, 543
Sau96I	GGNCC	1 cut(s)	707
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	2 cut(s)	53, 126
SduI	GDGCHC	5 cut(s)	53, 98, 155, 289, 607
SetI	ASST	9 cut(s)	82, 175, 262, 350, 417, 567, 601, 702, 813
SfaNI	GCATC	4 cut(s)	180, 600, 640, 787
SfcI	CTRYAG	1 cut(s)	769
SgrAI	CRCCGGYG	1 cut(s)	179
SinI	GGWCC	1 cut(s)	707
SmiMI	CAYNNNNRTG	1 cut(s)	268
SmlI	CTYRAG	2 cut(s)	164, 416
SmoI	CTYRAG	2 cut(s)	164, 416
SpeI	ACTAGT	1 cut(s)	778
SsiI	CCGC	8 cut(s)	129, 143, 148, 177, 183, 241, 249, 403
SspMI	CTAG	4 cut(s)	60, 105, 351, 779
StyD4I	CCNGG	2 cut(s)	51, 124
TaaI	ACNGT	2 cut(s)	25, 361
TaiI	ACGT	3 cut(s)	82, 262, 601
TaqI	TCGA	1 cut(s)	669
TatI	WGTACW	2 cut(s)	444, 480
TauI	GCSGC	2 cut(s)	179, 186
TfiI	GAWTC	1 cut(s)	761
Tru1I	TTAA	4 cut(s)	275, 374, 417, 738
Tru9I	TTAA	4 cut(s)	275, 374, 417, 738
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	2 cut(s)	453, 466
TspGWI	ACGGA	1 cut(s)	699
Tth111I	GACNNNGTC	1 cut(s)	258
Vha464I	CTTAAG	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	707
XceI	RCATGY	2 cut(s)	661, 753
XmiI	GTMKAC	1 cut(s)	20
XspI	CTAG	4 cut(s)	60, 105, 351, 779
Zsp2I	ATGCAT	1 cut(s)	655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.