Prupe.2G233400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0009308
Physical Location & Seq
Forward (+)
25646283 .. 25649883
3601 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G233400.1

Sequence Viewer

Length: 927 bp
ATGAAGGCCAACAAGGCAACGGTCTTAACGTTTGCTGAGAAATGCAAGAGCATACTGTCTTCCAACTGGCAAGGGCAACTCAATACCATAAAGGCTGATGCTAAAGGAAGTAAGGAAGACATATACAGATCAAAGGTTAAGTACATCTGCAAAAGAGGGAAGCCATACATTTGGGTACCCGAAAAGGAGTTGCATAATGTGAATGTAATTGTTGATGAACGCAGTTCATTTGCTGTGGCCAATCCCATCCCAGGTCCACTGGCAAGCTTGCTTAGATCGATAAAAAAGTCACCAGCTCGAATTGCTCTGATTGGAGATGTTGTACCTCTAACAGATGCAAAGGTTAAGTCTGCAACAGAAGTCCTTAAAGAAGTCATATTGTCGGAACAGAAAGCAATAAGTGAGTCCAGTTATACAGTTTCAGGTGTATTAAGTTCTTCTGATCATAGCCGTACATCTCGAAGCGAAAACCTTAAGGAGGTCTTGGAAGGGGATGAAAAGTACATAGTTTATAAGTTCAACCAAAGATCATGCATGTATGTTGACGGCAATGGAGACACTCATGAGATTGATCAGGAAGATATGAACGCATCTAAAGCAGATCCGTTAGCTCTTTTGTCCGCTAAGCTTATCGATGGGATAAATCAAAGCGCTGCCAGACGCAGAGCCCTCATGCTTTTCTGCTTGACATACTTCAATACAAATGCAAAGGATGCATACATGCTGTCTATCGATCGTAAGGGATTTGAGGTATTGAGCAAGGTTCCCAGTCCTGCGATGAAGGATGGATATGGCCAGTTTCAGTGGAAGCAATTTAGATTATCTTTGAAGGAAGAGGCACGTGATGTCGAAGCATTCTGCCGCCAACTTGTGGAAATGGAAGAGGAGGCTGTTAAGGAGGTTTCAGGCCACAGTGGTTTAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2470 Pyrid_oxidase_2

Protein Analysis

309

Amino Acids

34.33

Weight (kDa)

8.61

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 513
Acc65I GGTACC 1 cut(s) 175
AccB1I GGYRCC 1 cut(s) 175
AccB7I CCANNNNNTGG 1 cut(s) 871
AciI CCGC 2 cut(s) 621, 862
AclI AACGTT 1 cut(s) 29
AclWI GGATC 1 cut(s) 596
AcoI YGGCCR 2 cut(s) 237, 793
AcvI CACGTG 1 cut(s) 842
AfaI GTAC 5 cut(s) 143, 177, 324, 454, 503
AfeI AGCGCT 1 cut(s) 652
AfiI CCNNNNNNNGG 3 cut(s) 251, 478, 871
AflII CTTAAG 1 cut(s) 473
AgsI TTSAA 3 cut(s) 520, 697, 829
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 4 cut(s) 267, 296, 611, 628
AluI AGCT 4 cut(s) 267, 296, 611, 628
Alw26I GTCTC 1 cut(s) 549
AlwI GGATC 1 cut(s) 596
Aor51HI AGCGCT 1 cut(s) 652
AoxI GGCC 4 cut(s) 6, 237, 793, 907
ApeKI GCWGC 1 cut(s) 653
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
Asp718I GGTACC 1 cut(s) 175
AspLEI GCGC 1 cut(s) 653
AspS9I GGNCC 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 282
AvaII GGWCC 1 cut(s) 254
BalI TGGCCA 2 cut(s) 239, 795
BanI GGYRCC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 670
BbrPI CACGTG 1 cut(s) 842
BbsI GAAGAC 2 cut(s) 51, 123
BbvI GCAGC 1 cut(s) 640
BccI CCATC 3 cut(s) 254, 629, 779
BceAI ACGGC 2 cut(s) 435, 562
BciT130I CCWGG 1 cut(s) 252
BclI TGATCA 2 cut(s) 442, 571
BcoDI GTCTC 1 cut(s) 549
BfoI RGCGCY 1 cut(s) 654
BfrI CTTAAG 1 cut(s) 473
BglI GCCNNNNNGGC 1 cut(s) 14
BisI GCNGC 2 cut(s) 654, 862
BlpI GCTNAGC 1 cut(s) 624
BlsI GCNGC 2 cut(s) 655, 863
Bme1390I CCNGG 1 cut(s) 252
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 2 cut(s) 177, 765
BmrFI CCNGG 1 cut(s) 252
BmrI ACTGGG 1 cut(s) 762
BmsI GCATC 4 cut(s) 88, 325, 599, 703
BmuI ACTGGG 1 cut(s) 762
BpiI GAAGAC 2 cut(s) 51, 123
Bpu1102I GCTNAGC 1 cut(s) 624
Bsa29I ATCGAT 3 cut(s) 278, 633, 732
BsaAI YACGTR 1 cut(s) 842
BsaJI CCNNGG 1 cut(s) 250
BsaXI ACNNNNNCTCC 2 cut(s) 306, 336
Bsc4I CCNNNNNNNGG 3 cut(s) 251, 478, 871
Bse1I ACTGG 5 cut(s) 71, 264, 408, 768, 796
Bse3DI GCAATG 1 cut(s) 556
BseBI CCWGG 1 cut(s) 252
BseCI ATCGAT 3 cut(s) 278, 633, 732
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 4 cut(s) 246, 499, 718, 790
BseLI CCNNNNNNNGG 3 cut(s) 251, 478, 871
BseMI GCAATG 1 cut(s) 556
BseMII CTCAG 1 cut(s) 27
BseNI ACTGG 5 cut(s) 71, 264, 408, 768, 796
BseRI GAGGAG 1 cut(s) 899
BseXI GCAGC 1 cut(s) 640
Bsh1285I CGRYCG 1 cut(s) 736
BshFI GGCC 4 cut(s) 8, 239, 795, 909
BshNI GGYRCC 1 cut(s) 175
BshVI ATCGAT 3 cut(s) 278, 633, 732
BsiEI CGRYCG 1 cut(s) 736
BslI CCNNNNNNNGG 3 cut(s) 251, 478, 871
BsmAI GTCTC 1 cut(s) 549
BsmI GAATGC 1 cut(s) 854
BsnI GGCC 4 cut(s) 8, 239, 795, 909
Bsp1286I GDGCHC 1 cut(s) 670
Bsp143I GATC 7 cut(s) 128, 275, 442, 527, 571, 601, 733
Bsp1720I GCTNAGC 1 cut(s) 624
BspACI CCGC 2 cut(s) 621, 862
BspANI GGCC 4 cut(s) 8, 239, 795, 909
BspCNI CTCAG 1 cut(s) 28
BspDI ATCGAT 3 cut(s) 278, 633, 732
BspHI TCATGA 1 cut(s) 562
BspLI GGNNCC 2 cut(s) 177, 765
BspPI GGATC 1 cut(s) 596
BspT107I GGYRCC 1 cut(s) 175
BspTI CTTAAG 1 cut(s) 473
BsrDI GCAATG 1 cut(s) 556
BsrI ACTGG 5 cut(s) 71, 264, 408, 768, 796
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 7 cut(s) 128, 275, 442, 527, 571, 601, 733
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 4 cut(s) 22, 57, 418, 914
Bst6I CTCTTC 2 cut(s) 828, 876
BstAFI CTTAAG 1 cut(s) 473
BstAPI GCANNNNNTGC 1 cut(s) 713
BstBAI YACGTR 1 cut(s) 842
BstC8I GCNNGC 2 cut(s) 265, 269
BstDEI CTNAG 3 cut(s) 36, 272, 624
BstENI CCTNNNNNAGG 1 cut(s) 476
BstF5I GGATG 4 cut(s) 246, 499, 718, 790
BstH2I RGCGCY 1 cut(s) 654
BstHHI GCGC 1 cut(s) 653
BstKTI GATC 7 cut(s) 131, 278, 445, 530, 574, 604, 736
BstMAI GTCTC 1 cut(s) 549
BstMBI GATC 7 cut(s) 128, 275, 442, 527, 571, 601, 733
BstMCI CGRYCG 1 cut(s) 736
BstMWI GCNNNNNNNGC 4 cut(s) 14, 302, 596, 713
BstNI CCWGG 1 cut(s) 252
BstNSI RCATGY 2 cut(s) 538, 724
BstSCI CCNGG 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 640
BstV2I GAAGAC 2 cut(s) 51, 123
BstX2I RGATCY 1 cut(s) 601
BstXI CCANNNNNNTGG 1 cut(s) 171
BstYI RGATCY 1 cut(s) 601
Bsu15I ATCGAT 3 cut(s) 278, 633, 732
BsuRI GGCC 4 cut(s) 8, 239, 795, 909
BsuTUI ATCGAT 3 cut(s) 278, 633, 732
BtgZI GCGATG 1 cut(s) 791
BtsCI GGATG 4 cut(s) 246, 499, 718, 790
BtsIMutI CAGTG 3 cut(s) 257, 809, 919
Cac8I GCNNGC 2 cut(s) 265, 269
CciI TCATGA 1 cut(s) 562
CfoI GCGC 1 cut(s) 653
Cfr13I GGNCC 1 cut(s) 254
ClaI ATCGAT 3 cut(s) 278, 633, 732
CseI GACGC 1 cut(s) 669
Csp6I GTAC 5 cut(s) 142, 176, 323, 453, 502
CviAII CATG 6 cut(s) 531, 535, 563, 673, 721, 924
CviQI GTAC 5 cut(s) 142, 176, 323, 453, 502
DdeI CTNAG 3 cut(s) 36, 272, 624
DpnI GATC 7 cut(s) 130, 277, 444, 529, 573, 603, 735
DpnII GATC 7 cut(s) 128, 275, 442, 527, 571, 601, 733
EaeI YGGCCR 2 cut(s) 237, 793
Eam1104I CTCTTC 2 cut(s) 828, 876
EarI CTCTTC 2 cut(s) 828, 876
Eco24I GRGCYC 1 cut(s) 670
Eco47I GGWCC 1 cut(s) 254
Eco47III AGCGCT 1 cut(s) 652
Eco72I CACGTG 1 cut(s) 842
EcoNI CCTNNNNNAGG 1 cut(s) 476
EcoRII CCWGG 1 cut(s) 250
EcoT22I ATGCAT 2 cut(s) 536, 718
EcoT38I GRGCYC 1 cut(s) 670
FaeI CATG 6 cut(s) 534, 538, 566, 676, 724, 927
FalI AAGNNNNNCTT 2 cut(s) 467, 499
FatI CATG 6 cut(s) 530, 534, 562, 672, 720, 923
FbaI TGATCA 2 cut(s) 442, 571
Fnu4HI GCNGC 2 cut(s) 654, 862
FokI GGATG 4 cut(s) 233, 506, 725, 797
FriOI GRGCYC 1 cut(s) 670
Fsp4HI GCNGC 2 cut(s) 654, 862
GlaI GCGC 1 cut(s) 652
GluI GCNGC 2 cut(s) 654, 862
HaeII RGCGCY 1 cut(s) 654
HaeIII GGCC 4 cut(s) 8, 239, 795, 909
HgaI GACGC 1 cut(s) 669
HhaI GCGC 1 cut(s) 653
Hin1II CATG 6 cut(s) 534, 538, 566, 676, 724, 927
Hin6I GCGC 1 cut(s) 651
HinP1I GCGC 1 cut(s) 651
HincII GTYRAC 1 cut(s) 544
HindII GTYRAC 1 cut(s) 544
HindIII AAGCTT 2 cut(s) 265, 626
HinfI GANTC 1 cut(s) 404
HphI GGTGA 1 cut(s) 282
Hpy166II GTNNAC 2 cut(s) 257, 544
Hpy188I TCNGA 3 cut(s) 309, 385, 442
Hpy188III TCNNGA 3 cut(s) 459, 563, 575
Hpy8I GTNNAC 2 cut(s) 257, 544
HpyAV CCTTC 3 cut(s) 482, 775, 823
HpyCH4III ACNGT 4 cut(s) 22, 57, 418, 914
HpyCH4IV ACGT 2 cut(s) 29, 841
HpyCH4V TGCA 8 cut(s) 45, 150, 193, 338, 353, 534, 707, 716
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 302, 596, 713
HpyF3I CTNAG 3 cut(s) 36, 272, 624
HpySE526I ACGT 2 cut(s) 29, 841
Hsp92II CATG 6 cut(s) 534, 538, 566, 676, 724, 927
HspAI GCGC 1 cut(s) 651
KpnI GGTACC 1 cut(s) 179
Ksp22I TGATCA 2 cut(s) 442, 571
Kzo9I GATC 7 cut(s) 128, 275, 442, 527, 571, 601, 733
Lsp1109I GCAGC 1 cut(s) 640
LweI GCATC 4 cut(s) 88, 325, 599, 703
MaeII ACGT 2 cut(s) 29, 841
MaeIII GTNAC 1 cut(s) 288
MalI GATC 7 cut(s) 130, 277, 444, 529, 573, 603, 735
MboI GATC 7 cut(s) 128, 275, 442, 527, 571, 601, 733
MboII GAAGA 6 cut(s) 51, 128, 429, 590, 845, 893
MflI RGATCY 1 cut(s) 601
MhlI GDGCHC 1 cut(s) 670
MlsI TGGCCA 2 cut(s) 239, 795
MluCI AATT 3 cut(s) 207, 300, 812
MluNI TGGCCA 2 cut(s) 239, 795
MlyI GAGTC 1 cut(s) 413
MmeI TCCRAC 2 cut(s) 87, 363
MnlI CCTC 9 cut(s) 149, 336, 472, 680, 742, 829, 877, 880, 892
Mox20I TGGCCA 2 cut(s) 239, 795
Mph1103I ATGCAT 2 cut(s) 536, 718
MscI TGGCCA 2 cut(s) 239, 795
MseI TTAA 7 cut(s) 26, 138, 345, 366, 431, 474, 894
Msp20I TGGCCA 2 cut(s) 239, 795
MspCI CTTAAG 1 cut(s) 473
MspR9I CCNGG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 854
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 4 cut(s) 14, 302, 596, 713
NdeII GATC 7 cut(s) 128, 275, 442, 527, 571, 601, 733
NlaIII CATG 6 cut(s) 534, 538, 566, 676, 724, 927
NlaIV GGNNCC 2 cut(s) 177, 765
NmuCI GTSAC 1 cut(s) 288
NsiI ATGCAT 2 cut(s) 536, 718
NspI RCATGY 2 cut(s) 538, 724
PagI TCATGA 1 cut(s) 562
PcsI WCGNNNNNNNCGW 1 cut(s) 26
PctI GAATGC 1 cut(s) 854
PflMI CCANNNNNTGG 1 cut(s) 871
PkrI GCNGC 2 cut(s) 655, 863
Ple19I CGATCG 1 cut(s) 736
PleI GAGTC 1 cut(s) 412
PmaCI CACGTG 1 cut(s) 842
PmlI CACGTG 1 cut(s) 842
PpsI GAGTC 1 cut(s) 412
Ppu21I YACGTR 1 cut(s) 842
PsiI TTATAA 1 cut(s) 513
Psp1406I AACGTT 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 250
PspCI CACGTG 1 cut(s) 842
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 2 cut(s) 177, 765
PspPI GGNCC 1 cut(s) 254
PsuI RGATCY 1 cut(s) 601
PvuI CGATCG 1 cut(s) 736
RsaI GTAC 5 cut(s) 143, 177, 324, 454, 503
RsaNI GTAC 5 cut(s) 142, 176, 323, 453, 502
SaqAI TTAA 7 cut(s) 26, 138, 345, 366, 431, 474, 894
SatI GCNGC 2 cut(s) 654, 862
Sau3AI GATC 7 cut(s) 128, 275, 442, 527, 571, 601, 733
Sau96I GGNCC 1 cut(s) 254
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 1 cut(s) 670
SfaNI GCATC 4 cut(s) 88, 325, 599, 703
SinI GGWCC 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 473
SmoI CTYRAG 1 cut(s) 473
Sse9I AATT 3 cut(s) 207, 300, 812
SsiI CCGC 2 cut(s) 621, 862
StyD4I CCNGG 1 cut(s) 250
TaaI ACNGT 4 cut(s) 22, 57, 418, 914
TaiI ACGT 2 cut(s) 32, 844
TaqI TCGA 6 cut(s) 278, 298, 460, 633, 732, 849
TasI AATT 3 cut(s) 207, 300, 812
TatI WGTACW 2 cut(s) 141, 501
TauI GCSGC 1 cut(s) 864
Tru1I TTAA 7 cut(s) 26, 138, 345, 366, 431, 474, 894
Tru9I TTAA 7 cut(s) 26, 138, 345, 366, 431, 474, 894
TscAI CASTG 3 cut(s) 264, 809, 919
TseFI GTSAC 1 cut(s) 288
TseI GCWGC 1 cut(s) 653
Tsp45I GTSAC 1 cut(s) 288
TspDTI ATGAA 6 cut(s) 17, 216, 231, 510, 599, 794
TspGWI ACGGA 1 cut(s) 594
TspRI CASTG 3 cut(s) 264, 809, 919
Van91I CCANNNNNTGG 1 cut(s) 871
Vha464I CTTAAG 1 cut(s) 473
VpaK11BI GGWCC 1 cut(s) 254
XagI CCTNNNNNAGG 1 cut(s) 476
XceI RCATGY 2 cut(s) 538, 724
Zsp2I ATGCAT 2 cut(s) 536, 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.