FvH4_7g22120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0009308
Physical Location & Seq
Forward (+)
17520293 .. 17523829
3537 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g22120.t1

Sequence Viewer

Length: 927 bp
ATGAAGACGAACAAGGCGACGGTGTTGACATTTGCAGAGAAATGCAAGAGTATACTGTCTGCGAATTGGCGAGGGCAGCTGAATACCATCAAGGCTGATGCTAAAGGAAGCAAGGAGGACATTTACACATCAAAGATCAAGTACATATGCAAAAGAGGGAAGCCGTACATTTGGATACCAGAGAAGGAGTTGCACAATGTGAACTTAATTGTTGATGAACGGGGTTCTTTTTCTGTGGCTAGTCCCATCCCAGGGCCACTGGCAGGTTTACTTAGATCAATAAAGAAGTTACCAGATCGAGTTGCTCTGACTGGAGATGTTGTTCCTTTAACTGATGAAAAGGCTCAGTCCGCAACAAAAGTCCTTAGAGAAGTCATGCAATCGGAACAGAGAGCAATCAGTGCTTCCAGTTATACAGTGTCAGGTGTATTAAGTTCTTCTGATCATAGTCGTACTTCGCGGAGTGAAAACCTTAAGGATCTCTTGGAAGGGGATGAAAAGTACATAGTTTATAAGTTCAACCAGAGATCTTGCATGTACATTGATGGAAATGGAAGCACTCATGAAATTGATGAAGAAGACATGGGTCAATGTAAAGCAGATCCGTTAGCTTGTTTATCTGCTAAGCTTATTGATGGGATAAATCAGAGTGTAGCAAGACGCAGAGCCCTGACGCTTTTTTGTTTGACATACAAGAATGCAAATGCTAAGGATGCATACATGCTGTCTGTCGATCACAAGGGATTTGAGGTATTGAGCAAGGTTGCCGGTCCATTGTCGAAGGGAGACATTGGTCAGTACCAGTGGAAGGAGTTCAGATTTAACTTGAAGGAAGAGGCACGTGATGTTGAATCATTCTGCCGTCAACTTGTAGAAATGGAAATGGATGCTGTTAAGGAGGTCTCAAGCCATAGTGGTTTAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2470 Pyrid_oxidase_2

Protein Analysis

309

Amino Acids

34.3

Weight (kDa)

8.53

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 513
Acc36I ACCTGC 1 cut(s) 254
AccI GTMKAC 1 cut(s) 52
AccII CGCG 1 cut(s) 460
AciI CCGC 2 cut(s) 351, 460
AclWI GGATC 2 cut(s) 486, 596
AcvI CACGTG 1 cut(s) 842
AdeI CACNNNGTG 1 cut(s) 199
AfaI GTAC 6 cut(s) 143, 167, 454, 503, 539, 800
AfiI CCNNNNNNNGG 4 cut(s) 251, 252, 263, 808
AflII CTTAAG 1 cut(s) 473
AgsI TTSAA 3 cut(s) 520, 829, 851
AjnI CCWGG 1 cut(s) 250
AloI GAACNNNNNNTCC 2 cut(s) 306, 338
AluBI AGCT 3 cut(s) 79, 611, 628
AluI AGCT 3 cut(s) 79, 611, 628
Alw26I GTCTC 2 cut(s) 780, 907
AlwI GGATC 2 cut(s) 486, 596
AoxI GGCC 1 cut(s) 254
ApeKI GCWGC 1 cut(s) 76
Asp700I GAANNNNTTC 1 cut(s) 812
AspS9I GGNCC 2 cut(s) 254, 770
AvaII GGWCC 1 cut(s) 770
BanII GRGCYC 1 cut(s) 670
BbrPI CACGTG 1 cut(s) 842
BbsI GAAGAC 2 cut(s) 11, 585
BbvI GCAGC 1 cut(s) 88
BccI CCATC 4 cut(s) 95, 254, 539, 629
BceAI ACGGC 2 cut(s) 148, 846
BciT130I CCWGG 1 cut(s) 252
BciVI GTATCC 1 cut(s) 168
BclI TGATCA 1 cut(s) 442
BcoDI GTCTC 2 cut(s) 780, 907
BfaI CTAG 1 cut(s) 240
BfrI CTTAAG 1 cut(s) 473
BfuAI ACCTGC 1 cut(s) 254
BfuI GTATCC 1 cut(s) 168
BglII AGATCT 1 cut(s) 527
BisI GCNGC 1 cut(s) 77
BlpI GCTNAGC 1 cut(s) 624
BlsI GCNGC 1 cut(s) 78
Bme1390I CCNGG 1 cut(s) 252
Bme18I GGWCC 1 cut(s) 770
BmgT120I GGNCC 2 cut(s) 254, 770
BmrFI CCNGG 1 cut(s) 252
BmsI GCATC 3 cut(s) 88, 703, 877
BoxI GACNNNNGTC 2 cut(s) 585, 792
BpiI GAAGAC 2 cut(s) 11, 585
BpmI CTGGAG 1 cut(s) 333
Bpu10I CCTNAGC 1 cut(s) 708
Bpu1102I GCTNAGC 1 cut(s) 624
BpuEI CTTGAG 1 cut(s) 889
BsaAI YACGTR 1 cut(s) 842
BsaI GGTCTC 1 cut(s) 907
BsaJI CCNNGG 2 cut(s) 250, 251
BsaXI ACNNNNNCTCC 2 cut(s) 306, 336
Bsc4I CCNNNNNNNGG 4 cut(s) 251, 252, 263, 808
Bse118I RCCGGY 1 cut(s) 767
Bse1I ACTGG 4 cut(s) 264, 316, 408, 802
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 2 cut(s) 250, 251
BseGI GGATG 4 cut(s) 246, 499, 718, 892
BseLI CCNNNNNNNGG 4 cut(s) 251, 252, 263, 808
BseMII CTCAG 1 cut(s) 359
BseNI ACTGG 4 cut(s) 264, 316, 408, 802
BseXI GCAGC 1 cut(s) 88
Bsh1236I CGCG 1 cut(s) 460
BshFI GGCC 1 cut(s) 256
BsiSI CCGG 1 cut(s) 768
BslFI GGGAC 1 cut(s) 228
BslI CCNNNNNNNGG 4 cut(s) 251, 252, 263, 808
BsmAI GTCTC 2 cut(s) 780, 907
BsmFI GGGAC 1 cut(s) 228
BsmI GAATGC 1 cut(s) 703
BsnI GGCC 1 cut(s) 256
Bso31I GGTCTC 1 cut(s) 907
Bsp1286I GDGCHC 1 cut(s) 670
Bsp1407I TGTACA 1 cut(s) 537
Bsp143I GATC 8 cut(s) 135, 275, 295, 442, 478, 527, 601, 733
Bsp1720I GCTNAGC 1 cut(s) 624
BspACI CCGC 2 cut(s) 351, 460
BspANI GGCC 1 cut(s) 256
BspCNI CTCAG 1 cut(s) 358
BspFNI CGCG 1 cut(s) 460
BspHI TCATGA 1 cut(s) 562
BspMI ACCTGC 1 cut(s) 254
BspPI GGATC 2 cut(s) 486, 596
BspTI CTTAAG 1 cut(s) 473
BspTNI GGTCTC 1 cut(s) 907
BsrFI RCCGGY 1 cut(s) 767
BsrGI TGTACA 1 cut(s) 537
BsrI ACTGG 4 cut(s) 264, 316, 408, 802
BssAI RCCGGY 1 cut(s) 767
BssECI CCNNGG 2 cut(s) 250, 251
BssMI GATC 8 cut(s) 135, 275, 295, 442, 478, 527, 601, 733
BssNAI GTATAC 1 cut(s) 53
Bst1107I GTATAC 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 3 cut(s) 22, 57, 418
Bst6I CTCTTC 1 cut(s) 828
BstAFI CTTAAG 1 cut(s) 473
BstAPI GCANNNNNTGC 1 cut(s) 401
BstAUI TGTACA 1 cut(s) 537
BstBAI YACGTR 1 cut(s) 842
BstDEI CTNAG 5 cut(s) 272, 345, 365, 624, 708
BstF5I GGATG 4 cut(s) 246, 499, 718, 892
BstFNI CGCG 1 cut(s) 460
BstKTI GATC 8 cut(s) 138, 278, 298, 445, 481, 530, 604, 736
BstMAI GTCTC 2 cut(s) 780, 907
BstMBI GATC 8 cut(s) 135, 275, 295, 442, 478, 527, 601, 733
BstMWI GCNNNNNNNGC 4 cut(s) 76, 350, 401, 713
BstNI CCWGG 1 cut(s) 252
BstNSI RCATGY 2 cut(s) 538, 724
BstPAI GACNNNNGTC 2 cut(s) 585, 792
BstSCI CCNGG 1 cut(s) 250
BstUI CGCG 1 cut(s) 460
BstV1I GCAGC 1 cut(s) 88
BstV2I GAAGAC 2 cut(s) 11, 585
BstX2I RGATCY 3 cut(s) 478, 527, 601
BstYI RGATCY 3 cut(s) 478, 527, 601
BstZ17I GTATAC 1 cut(s) 53
BsuI GTATCC 1 cut(s) 168
BsuRI GGCC 1 cut(s) 256
BtsCI GGATG 4 cut(s) 246, 499, 718, 892
BtsIMutI CAGTG 4 cut(s) 257, 406, 423, 809
BveI ACCTGC 1 cut(s) 254
CciI TCATGA 1 cut(s) 562
Cfr10I RCCGGY 1 cut(s) 767
Cfr13I GGNCC 2 cut(s) 254, 770
CseI GACGC 2 cut(s) 669, 682
Csp6I GTAC 6 cut(s) 142, 166, 453, 502, 538, 799
CviAII CATG 5 cut(s) 376, 535, 563, 583, 721
CviQI GTAC 6 cut(s) 142, 166, 453, 502, 538, 799
DdeI CTNAG 5 cut(s) 272, 345, 365, 624, 708
DpnI GATC 8 cut(s) 137, 277, 297, 444, 480, 529, 603, 735
DpnII GATC 8 cut(s) 135, 275, 295, 442, 478, 527, 601, 733
DraIII CACNNNGTG 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 828
EarI CTCTTC 1 cut(s) 828
Eco24I GRGCYC 1 cut(s) 670
Eco31I GGTCTC 1 cut(s) 907
Eco47I GGWCC 1 cut(s) 770
Eco72I CACGTG 1 cut(s) 842
EcoRII CCWGG 1 cut(s) 250
EcoT22I ATGCAT 1 cut(s) 718
EcoT38I GRGCYC 1 cut(s) 670
FaeI CATG 5 cut(s) 379, 538, 566, 586, 724
FalI AAGNNNNNCTT 2 cut(s) 467, 499
FaqI GGGAC 1 cut(s) 228
FatI CATG 5 cut(s) 375, 534, 562, 582, 720
FauNDI CATATG 1 cut(s) 146
FbaI TGATCA 1 cut(s) 442
FblI GTMKAC 1 cut(s) 52
Fnu4HI GCNGC 1 cut(s) 77
FokI GGATG 4 cut(s) 233, 506, 725, 899
FriOI GRGCYC 1 cut(s) 670
Fsp4HI GCNGC 1 cut(s) 77
FspBI CTAG 1 cut(s) 240
GluI GCNGC 1 cut(s) 77
GsuI CTGGAG 1 cut(s) 333
HaeIII GGCC 1 cut(s) 256
HapII CCGG 1 cut(s) 768
HgaI GACGC 2 cut(s) 669, 682
Hin1II CATG 5 cut(s) 379, 538, 566, 586, 724
HincII GTYRAC 2 cut(s) 27, 866
HindII GTYRAC 2 cut(s) 27, 866
HindIII AAGCTT 1 cut(s) 626
HinfI GANTC 1 cut(s) 851
HpaII CCGG 1 cut(s) 768
Hpy166II GTNNAC 5 cut(s) 27, 53, 202, 269, 866
Hpy188I TCNGA 5 cut(s) 309, 385, 442, 648, 818
Hpy188III TCNNGA 1 cut(s) 563
Hpy8I GTNNAC 5 cut(s) 27, 53, 202, 269, 866
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 5 cut(s) 178, 482, 775, 802, 823
HpyCH4III ACNGT 3 cut(s) 22, 57, 418
HpyCH4IV ACGT 1 cut(s) 841
HpyCH4V TGCA 8 cut(s) 35, 45, 150, 193, 379, 534, 701, 716
HpyF10VI GCNNNNNNNGC 4 cut(s) 76, 350, 401, 713
HpyF3I CTNAG 5 cut(s) 272, 345, 365, 624, 708
HpySE526I ACGT 1 cut(s) 841
Hsp92II CATG 5 cut(s) 379, 538, 566, 586, 724
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 8 cut(s) 135, 275, 295, 442, 478, 527, 601, 733
Lsp1109I GCAGC 1 cut(s) 88
LweI GCATC 3 cut(s) 88, 703, 877
MaeI CTAG 1 cut(s) 240
MaeII ACGT 1 cut(s) 841
MaeIII GTNAC 1 cut(s) 288
MalI GATC 8 cut(s) 137, 277, 297, 444, 480, 529, 603, 735
MboI GATC 8 cut(s) 135, 275, 295, 442, 478, 527, 601, 733
MboII GAAGA 5 cut(s) 16, 429, 587, 590, 845
MflI RGATCY 3 cut(s) 478, 527, 601
MhlI GDGCHC 1 cut(s) 670
MluCI AATT 3 cut(s) 64, 207, 567
MnlI CCTC 6 cut(s) 65, 109, 149, 742, 829, 892
Mph1103I ATGCAT 1 cut(s) 718
MroXI GAANNNNTTC 1 cut(s) 812
MseI TTAA 6 cut(s) 206, 329, 431, 474, 822, 894
MspA1I CMGCKG 1 cut(s) 79
MspCI CTTAAG 1 cut(s) 473
MspI CCGG 1 cut(s) 768
MspR9I CCNGG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 703
MvaI CCWGG 1 cut(s) 252
MvnI CGCG 1 cut(s) 460
MwoI GCNNNNNNNGC 4 cut(s) 76, 350, 401, 713
NdeI CATATG 1 cut(s) 146
NdeII GATC 8 cut(s) 135, 275, 295, 442, 478, 527, 601, 733
NlaIII CATG 5 cut(s) 379, 538, 566, 586, 724
NsiI ATGCAT 1 cut(s) 718
NspI RCATGY 2 cut(s) 538, 724
PagI TCATGA 1 cut(s) 562
PasI CCCWGGG 1 cut(s) 251
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PctI GAATGC 1 cut(s) 703
PdmI GAANNNNTTC 1 cut(s) 812
PfeI GAWTC 1 cut(s) 851
PkrI GCNGC 1 cut(s) 78
PmaCI CACGTG 1 cut(s) 842
PmlI CACGTG 1 cut(s) 842
Ppu21I YACGTR 1 cut(s) 842
PshAI GACNNNNGTC 2 cut(s) 585, 792
PsiI TTATAA 1 cut(s) 513
Psp6I CCWGG 1 cut(s) 250
PspCI CACGTG 1 cut(s) 842
PspGI CCWGG 1 cut(s) 250
PspPI GGNCC 2 cut(s) 254, 770
PsuI RGATCY 3 cut(s) 478, 527, 601
PvuII CAGCTG 1 cut(s) 79
RsaI GTAC 6 cut(s) 143, 167, 454, 503, 539, 800
RsaNI GTAC 6 cut(s) 142, 166, 453, 502, 538, 799
SaqAI TTAA 6 cut(s) 206, 329, 431, 474, 822, 894
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 8 cut(s) 135, 275, 295, 442, 478, 527, 601, 733
Sau96I GGNCC 2 cut(s) 254, 770
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 1 cut(s) 670
SfaNI GCATC 3 cut(s) 88, 703, 877
SinI GGWCC 1 cut(s) 770
SmlI CTYRAG 2 cut(s) 473, 904
SmoI CTYRAG 2 cut(s) 473, 904
Sse9I AATT 3 cut(s) 64, 207, 567
SsiI CCGC 2 cut(s) 351, 460
SspMI CTAG 1 cut(s) 240
StyD4I CCNGG 1 cut(s) 250
TaaI ACNGT 3 cut(s) 22, 57, 418
TaiI ACGT 1 cut(s) 844
TaqI TCGA 3 cut(s) 298, 732, 779
TasI AATT 3 cut(s) 64, 207, 567
TatI WGTACW 3 cut(s) 141, 501, 537
TfiI GAWTC 1 cut(s) 851
Tru1I TTAA 6 cut(s) 206, 329, 431, 474, 822, 894
Tru9I TTAA 6 cut(s) 206, 329, 431, 474, 822, 894
TscAI CASTG 4 cut(s) 264, 406, 423, 809
TseI GCWGC 1 cut(s) 76
TspDTI ATGAA 6 cut(s) 17, 231, 351, 510, 579, 588
TspGWI ACGGA 1 cut(s) 594
TspRI CASTG 4 cut(s) 264, 406, 423, 809
Vha464I CTTAAG 1 cut(s) 473
VpaK11BI GGWCC 1 cut(s) 770
XceI RCATGY 2 cut(s) 538, 724
XmiI GTMKAC 1 cut(s) 52
XmnI GAANNNNTTC 1 cut(s) 812
XspI CTAG 1 cut(s) 240
Zsp2I ATGCAT 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.