Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0009308

Physical Location & Seq

Genomic Coordinates Reverse (-)

54224136 .. 54227264

Gene Structure 3129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG342400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGGCATGCATTGGTCAGTACCAGTGGAAGGAGTTTAGATTTACTTTTAAGGAAGAGGCATGTGATGTTGAATCATTCTGCAGTCAACTAGTAGAAATGGAAGAGGATGCTGTTCAGGAGGACTGGAGTCTTCCACCCGATCTCCGATTCTCACCGATCCGCCGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2470 Pyrid_oxidase_2

Protein Analysis

56

Amino Acids

6.77

Weight (kDa)

4.34

Isoelectric Point (pI)

85.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04020 AT3G04020 AT3G04020 AT3G04020
fragaria_vesca	FvH4_7g22120
malus_domestica	MD07G1196400.v1.1
prunus_persica	Prupe.2G233400_v2.0.a1
pyrus_communis	pycom07g18450
rosa_chinensis	RchiOBHm_Chr1g0366511
rosa_laevigata	RLG00000027341
rosa_multiflora	Rmu_co8175244.1_g000001 Rmu_sc0011292.1_g000004
rosa_roxburghii	Rroxscaffold_4G00289860 Rroxscaffold_4G00290120
rosa_rugosa	Rorug01G0330500
rosa_samantha	Rh1AG338500 Rh1BG300000 Rh1CG315100 Rh1DG331800 Rh6AG342400
rosa_wichuraiana	Rw1G029970 Rw6G029860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	160, 163
AclWI	GGATC	1 cut(s)	151
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgsI	TTSAA	1 cut(s)	71
AhlI	ACTAGT	1 cut(s)	88
AlwI	GGATC	1 cut(s)	151
AsuHPI	GGTGA	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	122
BcuI	ACTAGT	1 cut(s)	88
BfaI	CTAG	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	79
BisI	GCNGC	1 cut(s)	163
BlsI	GCNGC	1 cut(s)	164
BmsI	GCATC	1 cut(s)	97
BoxI	GACNNNNGTC	1 cut(s)	126
BpiI	GAAGAC	1 cut(s)	122
BpmI	CTGGAG	1 cut(s)	145
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse1I	ACTGG	2 cut(s)	22, 128
BseGI	GGATG	1 cut(s)	112
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseNI	ACTGG	2 cut(s)	22, 128
BslI	CCNNNNNNNGG	1 cut(s)	28
Bsp143I	GATC	2 cut(s)	139, 156
BspACI	CCGC	2 cut(s)	160, 163
BspMAI	CTGCAG	1 cut(s)	83
BspPI	GGATC	1 cut(s)	151
BsrI	ACTGG	2 cut(s)	22, 128
BssMI	GATC	2 cut(s)	139, 156
Bst6I	CTCTTC	2 cut(s)	48, 96
BstC8I	GCNNGC	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	2 cut(s)	142, 159
BstMBI	GATC	2 cut(s)	139, 156
BstNSI	RCATGY	2 cut(s)	9, 63
BstPAI	GACNNNNGTC	1 cut(s)	126
BstSFI	CTRYAG	1 cut(s)	79
BstV2I	GAAGAC	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	29
Cac8I	GCNNGC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	2 cut(s)	6, 60
CviQI	GTAC	1 cut(s)	19
DpnI	GATC	2 cut(s)	141, 158
DpnII	GATC	2 cut(s)	139, 156
Eam1104I	CTCTTC	2 cut(s)	48, 96
EarI	CTCTTC	2 cut(s)	48, 96
EciI	GGCGGA	1 cut(s)	149
EcoT22I	ATGCAT	1 cut(s)	11
FaeI	CATG	2 cut(s)	9, 63
FaiI	YATR	2 cut(s)	7, 61
FatI	CATG	2 cut(s)	5, 59
Fnu4HI	GCNGC	1 cut(s)	163
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	163
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	1 cut(s)	163
GsuI	CTGGAG	1 cut(s)	145
Hin1II	CATG	2 cut(s)	9, 63
HincII	GTYRAC	1 cut(s)	86
HindII	GTYRAC	1 cut(s)	86
HinfI	GANTC	3 cut(s)	71, 127, 147
HphI	GGTGA	1 cut(s)	144
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188I	TCNGA	2 cut(s)	146, 170
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	1 cut(s)	86
HpyAV	CCTTC	1 cut(s)	22
HpyCH4V	TGCA	2 cut(s)	9, 81
Hsp92II	CATG	2 cut(s)	9, 63
Kzo9I	GATC	2 cut(s)	139, 156
LpnPI	CCDG	3 cut(s)	35, 101, 109
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	89
MalI	GATC	2 cut(s)	141, 158
MboI	GATC	2 cut(s)	139, 156
MboII	GAAGA	3 cut(s)	65, 113, 122
MlyI	GAGTC	1 cut(s)	136
MnlI	CCTC	3 cut(s)	49, 97, 112
Mph1103I	ATGCAT	1 cut(s)	11
MseI	TTAA	1 cut(s)	48
NdeII	GATC	2 cut(s)	139, 156
NlaIII	CATG	2 cut(s)	9, 63
NsiI	ATGCAT	1 cut(s)	11
NspI	RCATGY	2 cut(s)	9, 63
PaeI	GCATGC	1 cut(s)	9
PfeI	GAWTC	2 cut(s)	71, 147
PkrI	GCNGC	1 cut(s)	164
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
PshAI	GACNNNNGTC	1 cut(s)	126
PstI	CTGCAG	1 cut(s)	83
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	1 cut(s)	163
Sau3AI	GATC	2 cut(s)	139, 156
SchI	GAGTC	1 cut(s)	136
SfaNI	GCATC	1 cut(s)	97
SfcI	CTRYAG	1 cut(s)	79
SgeI	CNNG	7 cut(s)	18, 34, 72, 101, 128, 136, 149
SpeI	ACTAGT	1 cut(s)	88
SphI	GCATGC	1 cut(s)	9
SsiI	CCGC	2 cut(s)	160, 163
SspMI	CTAG	1 cut(s)	89
TauI	GCSGC	1 cut(s)	165
TfiI	GAWTC	2 cut(s)	71, 147
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	1 cut(s)	29
TspRI	CASTG	1 cut(s)	29
XceI	RCATGY	2 cut(s)	9, 63
XspI	CTAG	1 cut(s)	89
Zsp2I	ATGCAT	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.