Rmu_co8175244.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8175244.1
OG0009308
Physical Location & Seq
Forward (+)
1 .. 676
676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8175244.1_g000001.1.cds

Sequence Viewer

Length: 311 bp
cccctttatctgctaagcttatcgatgggataaatcagagtgtagcgagacgtagagccctgatgcttttttgtttgacttacaagaatgccaatgctaaggatgcatacatgctgtctgtcgaacgcaagggatttgacatattgagcaaggttgccggtccgttgttgaaggatggcattggtcagtaccagtggaaggagtttagatttacttttaaggaagaggcatgtgatgttgaatcattctgcagtcaactagtagaatggaagaggatgctgttcaggaggtttcaagccatagtggtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2470 Pyrid_oxidase_2

Protein Analysis

102

Amino Acids

11.84

Weight (kDa)

9.48

Isoelectric Point (pI)

47.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 198
AgsI TTSAA 3 cut(s) 171, 241, 295
AhlI ACTAGT 1 cut(s) 258
AluBI AGCT 1 cut(s) 18
AluI AGCT 1 cut(s) 18
Alw26I GTCTC 1 cut(s) 42
AspS9I GGNCC 1 cut(s) 160
AvaII GGWCC 1 cut(s) 160
BanII GRGCYC 1 cut(s) 60
BccI CCATC 2 cut(s) 19, 169
BcoDI GTCTC 1 cut(s) 42
BcuI ACTAGT 1 cut(s) 258
BfaI CTAG 1 cut(s) 259
BfmI CTRYAG 1 cut(s) 249
BlpI GCTNAGC 1 cut(s) 14
Bme18I GGWCC 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 160
BmsI GCATC 3 cut(s) 53, 93, 266
Bpu10I CCTNAGC 1 cut(s) 98
Bpu1102I GCTNAGC 1 cut(s) 14
Bsa29I ATCGAT 1 cut(s) 23
Bsc4I CCNNNNNNNGG 1 cut(s) 198
Bse118I RCCGGY 1 cut(s) 157
Bse1I ACTGG 1 cut(s) 192
BseCI ATCGAT 1 cut(s) 23
BseGI GGATG 3 cut(s) 108, 180, 281
BseLI CCNNNNNNNGG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 192
BshVI ATCGAT 1 cut(s) 23
BsiSI CCGG 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 198
BsmAI GTCTC 1 cut(s) 42
BsmBI CGTCTC 1 cut(s) 42
BsmI GAATGC 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 60
Bsp1720I GCTNAGC 1 cut(s) 14
BspDI ATCGAT 1 cut(s) 23
BspMAI CTGCAG 1 cut(s) 253
BsrFI RCCGGY 1 cut(s) 157
BsrI ACTGG 1 cut(s) 192
BssAI RCCGGY 1 cut(s) 157
Bst6I CTCTTC 2 cut(s) 218, 265
BstDEI CTNAG 2 cut(s) 14, 98
BstF5I GGATG 3 cut(s) 108, 180, 281
BstMAI GTCTC 1 cut(s) 42
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstNSI RCATGY 2 cut(s) 114, 233
BstSFI CTRYAG 1 cut(s) 249
Bsu15I ATCGAT 1 cut(s) 23
BsuTUI ATCGAT 1 cut(s) 23
BtsCI GGATG 3 cut(s) 108, 180, 281
BtsIMutI CAGTG 1 cut(s) 199
Cfr10I RCCGGY 1 cut(s) 157
Cfr13I GGNCC 1 cut(s) 160
ClaI ATCGAT 1 cut(s) 23
CpoI CGGWCCG 1 cut(s) 160
Csp6I GTAC 1 cut(s) 189
CspI CGGWCCG 1 cut(s) 160
CviAII CATG 2 cut(s) 111, 230
CviJI RGCY 3 cut(s) 18, 58, 298
CviKI_1 RGCY 3 cut(s) 18, 58, 298
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 2 cut(s) 14, 98
Eam1104I CTCTTC 2 cut(s) 218, 265
EarI CTCTTC 2 cut(s) 218, 265
Eco24I GRGCYC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 160
EcoT22I ATGCAT 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 60
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 2 cut(s) 114, 233
FaiI YATR 5 cut(s) 108, 112, 142, 231, 301
FatI CATG 2 cut(s) 110, 229
FokI GGATG 3 cut(s) 115, 187, 288
FriOI GRGCYC 1 cut(s) 60
FspBI CTAG 1 cut(s) 259
HapII CCGG 1 cut(s) 158
Hin1II CATG 2 cut(s) 114, 233
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HindIII AAGCTT 1 cut(s) 16
HinfI GANTC 1 cut(s) 241
HpaII CCGG 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 1 cut(s) 38
Hpy188III TCNNGA 1 cut(s) 285
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 2 cut(s) 165, 192
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 2 cut(s) 106, 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpyF3I CTNAG 2 cut(s) 14, 98
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 2 cut(s) 114, 233
LpnPI CCDG 4 cut(s) 73, 171, 205, 270
LweI GCATC 3 cut(s) 53, 93, 266
MaeI CTAG 1 cut(s) 259
MaeII ACGT 1 cut(s) 51
MboII GAAGA 2 cut(s) 235, 282
MhlI GDGCHC 1 cut(s) 60
MnlI CCTC 3 cut(s) 219, 266, 281
Mph1103I ATGCAT 1 cut(s) 108
MseI TTAA 1 cut(s) 218
MspI CCGG 1 cut(s) 158
Mva1269I GAATGC 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 103
NlaIII CATG 2 cut(s) 114, 233
NsiI ATGCAT 1 cut(s) 108
NspI RCATGY 2 cut(s) 114, 233
PctI GAATGC 1 cut(s) 93
PfeI GAWTC 1 cut(s) 241
PspPI GGNCC 1 cut(s) 160
PstI CTGCAG 1 cut(s) 253
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
Rsr2I CGGWCCG 1 cut(s) 160
RsrII CGGWCCG 1 cut(s) 160
SaqAI TTAA 1 cut(s) 218
Sau96I GGNCC 1 cut(s) 160
SduI GDGCHC 1 cut(s) 60
SetI ASST 4 cut(s) 20, 54, 155, 292
SfaNI GCATC 3 cut(s) 53, 93, 266
SfcI CTRYAG 1 cut(s) 249
SinI GGWCC 1 cut(s) 160
SpeI ACTAGT 1 cut(s) 258
SspMI CTAG 1 cut(s) 259
TaiI ACGT 1 cut(s) 54
TaqI TCGA 2 cut(s) 23, 122
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TscAI CASTG 1 cut(s) 199
TspGWI ACGGA 1 cut(s) 152
TspRI CASTG 1 cut(s) 199
VpaK11BI GGWCC 1 cut(s) 160
XceI RCATGY 2 cut(s) 114, 233
XspI CTAG 1 cut(s) 259
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.