Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0009308

Physical Location & Seq

Genomic Coordinates Reverse (-)

10785775 .. 10788621

Gene Structure 2847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027341

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGAAGACGAACAAGACGACGGTTTTGACGTTTGCTGAGAAATGCAAGAGTATATTGTCTTCGAATTGGCAAGGGCAGCTCAATACCATCAAGGCTGATGCTAAAGGAAGGTACCCATTTCATTTAATTGTTGGAATAAATATGAAGCTGCATAAGGTATTACCAGCTCGAGTTGCTCTGACTGGAGATCTTGTACCTTTAACCAATGAAAAGGCTCAGTCTGCAACAAAAGTCCTTAGAGAAGTCATGCTATCGGAACAGACAGCAATCAGCGCGTCTAGTTATACAGTTTCAGGTGTATTAAGTTCTTCTGACCATAGTCGTACATCTCGGAGTGAAAACCTTAAGGATCTCTTGGAAGGGGATGAAAAGTACATAGTTTATAAGTTCAACCAAAGATCATGCATGTACATTGATGGCAATGGAAGCACTCATGACATTGACCAAGAAGATATAGGTGGATCTAAAGCAGATCCGTTAGCTCCTTTATCTGCTAAGCTTATTGATGGGATAAATCAGAGTGTAGCAAGACGCAGAGCCCTGATGCTTTTTTGTTTGACATACAAGAATGTCAATGCTAAGGATGCATACATGCTGTCTGTCGATCGCAAGGGATTTGACATATTGAGCAAGGTTGCCGGTCCATTGTTGAAGGATGGCATTGGTCAGTACCAGTGGAAGGAGTTCAGATTTACTTTGAAGGAAGAGGCACGTGATGTTGAATCATTCTGCAGTCAACTAGTAGAAATGGAAGAGGATGCTGTTAAGGAGGTTTCAAGCCATAGTGGTTTAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2470 Pyrid_oxidase_2

Protein Analysis

266

Amino Acids

29.38

Weight (kDa)

8.22

Isoelectric Point (pI)

37.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04020 AT3G04020 AT3G04020 AT3G04020
fragaria_vesca	FvH4_7g22120
malus_domestica	MD07G1196400.v1.1
prunus_persica	Prupe.2G233400_v2.0.a1
pyrus_communis	pycom07g18450
rosa_chinensis	RchiOBHm_Chr1g0366511
rosa_laevigata	RLG00000027341
rosa_multiflora	Rmu_co8175244.1_g000001 Rmu_sc0011292.1_g000004
rosa_roxburghii	Rroxscaffold_4G00289860 Rroxscaffold_4G00290120
rosa_rugosa	Rorug01G0330500
rosa_samantha	Rh1AG338500 Rh1BG300000 Rh1CG315100 Rh1DG331800 Rh6AG342400
rosa_wichuraiana	Rw1G029970 Rw6G029860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	384
Acc65I	GGTACC	1 cut(s)	111
AccB1I	GGYRCC	1 cut(s)	111
AccII	CGCG	1 cut(s)	275
AclWI	GGATC	3 cut(s)	357, 467, 469
AcvI	CACGTG	1 cut(s)	713
AfaI	GTAC	6 cut(s)	113, 195, 325, 374, 410, 671
AfiI	CCNNNNNNNGG	1 cut(s)	679
AflII	CTTAAG	1 cut(s)	344
AgsI	TTSAA	5 cut(s)	391, 652, 700, 722, 777
AhlI	ACTAGT	1 cut(s)	739
AluBI	AGCT	5 cut(s)	79, 148, 167, 482, 499
AluI	AGCT	5 cut(s)	79, 148, 167, 482, 499
AlwI	GGATC	3 cut(s)	357, 467, 469
Ama87I	CYCGRG	1 cut(s)	168
ApeKI	GCWGC	2 cut(s)	76, 148
ArsI	GACNNNNNNTTYG	2 cut(s)	7, 39
Asp700I	GAANNNNTTC	1 cut(s)	683
Asp718I	GGTACC	1 cut(s)	111
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	641
AsuII	TTCGAA	1 cut(s)	62
AvaI	CYCGRG	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	641
BanI	GGYRCC	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	541
BarI	GAAGNNNNNNTAC	2 cut(s)	43, 75
BbrPI	CACGTG	1 cut(s)	713
BbsI	GAAGAC	2 cut(s)	11, 51
BbvI	GCAGC	2 cut(s)	88, 135
BccI	CCATC	4 cut(s)	95, 410, 500, 650
BcuI	ACTAGT	1 cut(s)	739
BfaI	CTAG	2 cut(s)	279, 740
BfmI	CTRYAG	1 cut(s)	730
BfrI	CTTAAG	1 cut(s)	344
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	2 cut(s)	77, 149
BlpI	GCTNAGC	1 cut(s)	495
BlsI	GCNGC	2 cut(s)	78, 150
Bme18I	GGWCC	1 cut(s)	641
BmeT110I	CYCGRG	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	641
BmiI	GGNNCC	1 cut(s)	113
BmsI	GCATC	4 cut(s)	88, 534, 574, 748
BoxI	GACNNNNGTC	1 cut(s)	318
BpiI	GAAGAC	2 cut(s)	11, 51
BpmI	CTGGAG	1 cut(s)	204
Bpu10I	CCTNAGC	1 cut(s)	579
Bpu1102I	GCTNAGC	1 cut(s)	495
Bpu14I	TTCGAA	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	713
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bsc4I	CCNNNNNNNGG	1 cut(s)	679
Bse118I	RCCGGY	1 cut(s)	638
Bse1I	ACTGG	2 cut(s)	187, 673
Bse3DI	GCAATG	1 cut(s)	427
BseGI	GGATG	4 cut(s)	370, 589, 661, 763
BseLI	CCNNNNNNNGG	1 cut(s)	679
BseMI	GCAATG	1 cut(s)	427
BseMII	CTCAG	2 cut(s)	27, 230
BseNI	ACTGG	2 cut(s)	187, 673
BseXI	GCAGC	2 cut(s)	88, 135
Bsh1236I	CGCG	1 cut(s)	275
Bsh1285I	CGRYCG	1 cut(s)	607
BshNI	GGYRCC	1 cut(s)	111
BsiEI	CGRYCG	1 cut(s)	607
BsiHKCI	CYCGRG	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	639
BslI	CCNNNNNNNGG	1 cut(s)	679
BsoBI	CYCGRG	1 cut(s)	168
Bsp119I	TTCGAA	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	541
Bsp1407I	TGTACA	1 cut(s)	408
Bsp143I	GATC	6 cut(s)	187, 349, 398, 461, 472, 604
Bsp1720I	GCTNAGC	1 cut(s)	495
BspCNI	CTCAG	2 cut(s)	28, 229
BspFNI	CGCG	1 cut(s)	275
BspHI	TCATGA	1 cut(s)	433
BspLI	GGNNCC	1 cut(s)	113
BspMAI	CTGCAG	1 cut(s)	734
BspPI	GGATC	3 cut(s)	357, 467, 469
BspT104I	TTCGAA	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	111
BspTI	CTTAAG	1 cut(s)	344
BsrDI	GCAATG	1 cut(s)	427
BsrFI	RCCGGY	1 cut(s)	638
BsrGI	TGTACA	1 cut(s)	408
BsrI	ACTGG	2 cut(s)	187, 673
BssAI	RCCGGY	1 cut(s)	638
BssMI	GATC	6 cut(s)	187, 349, 398, 461, 472, 604
Bst4CI	ACNGT	2 cut(s)	22, 289
Bst6I	CTCTTC	2 cut(s)	699, 747
BstAFI	CTTAAG	1 cut(s)	344
BstAUI	TGTACA	1 cut(s)	408
BstBAI	YACGTR	1 cut(s)	713
BstBI	TTCGAA	1 cut(s)	62
BstDEI	CTNAG	5 cut(s)	36, 216, 236, 495, 579
BstF5I	GGATG	4 cut(s)	370, 589, 661, 763
BstFNI	CGCG	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	6 cut(s)	190, 352, 401, 464, 475, 607
BstMBI	GATC	6 cut(s)	187, 349, 398, 461, 472, 604
BstMCI	CGRYCG	1 cut(s)	607
BstMWI	GCNNNNNNNGC	6 cut(s)	76, 173, 221, 272, 426, 584
BstNSI	RCATGY	2 cut(s)	409, 595
BstPAI	GACNNNNGTC	1 cut(s)	318
BstSFI	CTRYAG	1 cut(s)	730
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	2 cut(s)	88, 135
BstV2I	GAAGAC	2 cut(s)	11, 51
BstX2I	RGATCY	4 cut(s)	187, 349, 461, 472
BstYI	RGATCY	4 cut(s)	187, 349, 461, 472
BtsCI	GGATG	4 cut(s)	370, 589, 661, 763
BtsIMutI	CAGTG	1 cut(s)	680
CciI	TCATGA	1 cut(s)	433
CfoI	GCGC	1 cut(s)	275
Cfr10I	RCCGGY	1 cut(s)	638
Cfr13I	GGNCC	1 cut(s)	641
CseI	GACGC	2 cut(s)	264, 540
Csp6I	GTAC	6 cut(s)	112, 194, 324, 373, 409, 670
CviAII	CATG	6 cut(s)	247, 402, 406, 434, 592, 795
CviJI	RGCY	9 cut(s)	79, 95, 148, 167, 215, 482, 499, 539, 780
CviKI_1	RGCY	9 cut(s)	79, 95, 148, 167, 215, 482, 499, 539, 780
CviQI	GTAC	6 cut(s)	112, 194, 324, 373, 409, 670
DdeI	CTNAG	5 cut(s)	36, 216, 236, 495, 579
DpnI	GATC	6 cut(s)	189, 351, 400, 463, 474, 606
DpnII	GATC	6 cut(s)	187, 349, 398, 461, 472, 604
Eam1104I	CTCTTC	2 cut(s)	699, 747
EarI	CTCTTC	2 cut(s)	699, 747
Eco24I	GRGCYC	1 cut(s)	541
Eco47I	GGWCC	1 cut(s)	641
Eco72I	CACGTG	1 cut(s)	713
Eco88I	CYCGRG	1 cut(s)	168
EcoT22I	ATGCAT	2 cut(s)	407, 589
EcoT38I	GRGCYC	1 cut(s)	541
FaeI	CATG	6 cut(s)	250, 405, 409, 437, 595, 798
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FatI	CATG	6 cut(s)	246, 401, 405, 433, 591, 794
Fnu4HI	GCNGC	2 cut(s)	77, 149
FokI	GGATG	4 cut(s)	377, 596, 668, 770
FriOI	GRGCYC	1 cut(s)	541
Fsp4HI	GCNGC	2 cut(s)	77, 149
FspBI	CTAG	2 cut(s)	279, 740
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	2 cut(s)	77, 149
GsuI	CTGGAG	1 cut(s)	204
HapII	CCGG	1 cut(s)	639
HgaI	GACGC	2 cut(s)	264, 540
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	6 cut(s)	250, 405, 409, 437, 595, 798
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HincII	GTYRAC	1 cut(s)	737
HindII	GTYRAC	1 cut(s)	737
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	1 cut(s)	722
HpaII	CCGG	1 cut(s)	639
Hpy166II	GTNNAC	1 cut(s)	737
Hpy188I	TCNGA	6 cut(s)	180, 256, 313, 333, 519, 689
Hpy188III	TCNNGA	1 cut(s)	434
Hpy8I	GTNNAC	1 cut(s)	737
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	5 cut(s)	102, 353, 646, 673, 694
HpyCH4III	ACNGT	2 cut(s)	22, 289
HpyCH4IV	ACGT	2 cut(s)	29, 712
HpyCH4V	TGCA	6 cut(s)	45, 151, 224, 405, 587, 732
HpyF10VI	GCNNNNNNNGC	6 cut(s)	76, 173, 221, 272, 426, 584
HpyF3I	CTNAG	5 cut(s)	36, 216, 236, 495, 579
HpySE526I	ACGT	2 cut(s)	29, 712
Hsp92II	CATG	6 cut(s)	250, 405, 409, 437, 595, 798
HspAI	GCGC	1 cut(s)	273
KpnI	GGTACC	1 cut(s)	115
Kzo9I	GATC	6 cut(s)	187, 349, 398, 461, 472, 604
LmnI	GCTCC	1 cut(s)	487
LpnPI	CCDG	6 cut(s)	168, 177, 279, 554, 652, 686
Lsp1109I	GCAGC	2 cut(s)	88, 135
LweI	GCATC	4 cut(s)	88, 534, 574, 748
MaeI	CTAG	2 cut(s)	279, 740
MaeII	ACGT	2 cut(s)	29, 712
MalI	GATC	6 cut(s)	189, 351, 400, 463, 474, 606
MboI	GATC	6 cut(s)	187, 349, 398, 461, 472, 604
MboII	GAAGA	6 cut(s)	16, 51, 300, 461, 716, 764
MflI	RGATCY	4 cut(s)	187, 349, 461, 472
MhlI	GDGCHC	1 cut(s)	541
MluCI	AATT	2 cut(s)	64, 126
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	3 cut(s)	700, 748, 763
Mph1103I	ATGCAT	2 cut(s)	407, 589
MroXI	GAANNNNTTC	1 cut(s)	683
MseI	TTAA	5 cut(s)	125, 200, 302, 345, 765
MspCI	CTTAAG	1 cut(s)	344
MspI	CCGG	1 cut(s)	639
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	6 cut(s)	76, 173, 221, 272, 426, 584
NdeII	GATC	6 cut(s)	187, 349, 398, 461, 472, 604
NlaIII	CATG	6 cut(s)	250, 405, 409, 437, 595, 798
NlaIV	GGNNCC	1 cut(s)	113
NsiI	ATGCAT	2 cut(s)	407, 589
NspI	RCATGY	2 cut(s)	409, 595
NspV	TTCGAA	1 cut(s)	62
PaeR7I	CTCGAG	1 cut(s)	168
PagI	TCATGA	1 cut(s)	433
PcsI	WCGNNNNNNNCGW	2 cut(s)	14, 26
PdmI	GAANNNNTTC	1 cut(s)	683
PfeI	GAWTC	1 cut(s)	722
PkrI	GCNGC	2 cut(s)	78, 150
Ple19I	CGATCG	1 cut(s)	607
PmaCI	CACGTG	1 cut(s)	713
PmlI	CACGTG	1 cut(s)	713
Ppu21I	YACGTR	1 cut(s)	713
PshAI	GACNNNNGTC	1 cut(s)	318
PsiI	TTATAA	1 cut(s)	384
PspCI	CACGTG	1 cut(s)	713
PspN4I	GGNNCC	1 cut(s)	113
PspPI	GGNCC	1 cut(s)	641
PspXI	VCTCGAGB	1 cut(s)	168
PstI	CTGCAG	1 cut(s)	734
PsuI	RGATCY	4 cut(s)	187, 349, 461, 472
PvuI	CGATCG	1 cut(s)	607
RsaI	GTAC	6 cut(s)	113, 195, 325, 374, 410, 671
RsaNI	GTAC	6 cut(s)	112, 194, 324, 373, 409, 670
SaqAI	TTAA	5 cut(s)	125, 200, 302, 345, 765
SatI	GCNGC	2 cut(s)	77, 149
Sau3AI	GATC	6 cut(s)	187, 349, 398, 461, 472, 604
Sau96I	GGNCC	1 cut(s)	641
SduI	GDGCHC	1 cut(s)	541
SfaNI	GCATC	4 cut(s)	88, 534, 574, 748
SfcI	CTRYAG	1 cut(s)	730
Sfr274I	CTCGAG	1 cut(s)	168
SfuI	TTCGAA	1 cut(s)	62
SinI	GGWCC	1 cut(s)	641
SlaI	CTCGAG	1 cut(s)	168
SmlI	CTYRAG	2 cut(s)	168, 344
SmoI	CTYRAG	2 cut(s)	168, 344
SpeI	ACTAGT	1 cut(s)	739
Sse9I	AATT	2 cut(s)	64, 126
SspMI	CTAG	2 cut(s)	279, 740
TaaI	ACNGT	2 cut(s)	22, 289
TaiI	ACGT	2 cut(s)	32, 715
TaqI	TCGA	3 cut(s)	62, 169, 603
TasI	AATT	2 cut(s)	64, 126
TatI	WGTACW	2 cut(s)	372, 408
TfiI	GAWTC	1 cut(s)	722
Tru1I	TTAA	5 cut(s)	125, 200, 302, 345, 765
Tru9I	TTAA	5 cut(s)	125, 200, 302, 345, 765
TscAI	CASTG	1 cut(s)	680
TseI	GCWGC	2 cut(s)	76, 148
TspDTI	ATGAA	5 cut(s)	17, 110, 158, 222, 381
TspGWI	ACGGA	1 cut(s)	465
TspRI	CASTG	1 cut(s)	680
Vha464I	CTTAAG	1 cut(s)	344
VpaK11BI	GGWCC	1 cut(s)	641
XceI	RCATGY	2 cut(s)	409, 595
XhoI	CTCGAG	1 cut(s)	168
XmnI	GAANNNNTTC	1 cut(s)	683
XspI	CTAG	2 cut(s)	279, 740
Zsp2I	ATGCAT	2 cut(s)	407, 589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.