Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011292.1

Orthogroup ID

OG0009308

Physical Location & Seq

Genomic Coordinates Reverse (-)

7598 .. 10811

Gene Structure 3214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011292.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atgttgaccggtgttgactggaagttgacctgtgttgactggaagttgaccggtgttgactggcacggcagggctgactgggtgctgacttggcaggctgtcttttggttctgggcctgcttctttgctactgggccggagtctgtttctaggctttgggctgcacctcagtatctgggtctagggttgcgtctgatctgggctgaagtctactgggtcagtttttcttctgggttggtggtcaggcagcggttcagagcaatggttcttcaggtgaccggttcaggtcactacaaaaaagaattcatttggcttcacatatcatgcatgtacattgatggcaatggaagcactcatgacattgaccaagaagatataggtggatctaaagcagatccgttagcccctttatctgctaagcttattgacgggataaatcagagtgtagcaagacgtagagccctgatgcttttttgtttgacttacaagaatgccaatgctaaggatgcatacatgctgtctgtcgatcgcaagggatttgacatattgagcaaggttgccagtccgttgttgaaggatggcattggtcagtaccagtggaaggagtttagatttacttgtaaggaagaggcacgtgatgttgaatcattctacagtcaactagtagaaatggaagggatgctgttcaggaggtttcaagccatagtggtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2470 Pyrid_oxidase_2

Protein Analysis

237

Amino Acids

27.22

Weight (kDa)

8.23

Isoelectric Point (pI)

36.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04020 AT3G04020 AT3G04020 AT3G04020
fragaria_vesca	FvH4_7g22120
malus_domestica	MD07G1196400.v1.1
prunus_persica	Prupe.2G233400_v2.0.a1
pyrus_communis	pycom07g18450
rosa_chinensis	RchiOBHm_Chr1g0366511
rosa_laevigata	RLG00000027341
rosa_multiflora	Rmu_co8175244.1_g000001 Rmu_sc0011292.1_g000004
rosa_roxburghii	Rroxscaffold_4G00289860 Rroxscaffold_4G00290120
rosa_rugosa	Rorug01G0330500
rosa_samantha	Rh1AG338500 Rh1BG300000 Rh1CG315100 Rh1DG331800 Rh6AG342400
rosa_wichuraiana	Rw1G029970 Rw6G029860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	210
AciI	CCGC	1 cut(s)	250
AclWI	GGATC	2 cut(s)	389, 391
AcsI	RAATTY	1 cut(s)	302
AcuI	CTGAAG	2 cut(s)	225, 254
AcvI	CACGTG	1 cut(s)	635
AfaI	GTAC	2 cut(s)	332, 593
AfiI	CCNNNNNNNGG	1 cut(s)	601
AgeI	ACCGGT	3 cut(s)	8, 50, 278
AgsI	TTSAA	3 cut(s)	574, 644, 698
AhlI	ACTAGT	1 cut(s)	661
AluBI	AGCT	1 cut(s)	421
AluI	AGCT	1 cut(s)	421
AlwI	GGATC	2 cut(s)	389, 391
AlwNI	CAGNNNCTG	1 cut(s)	175
AoxI	GGCC	2 cut(s)	114, 134
ApeKI	GCWGC	2 cut(s)	161, 247
ApoI	RAATTY	1 cut(s)	302
AsiGI	ACCGGT	3 cut(s)	8, 50, 278
AspS9I	GGNCC	2 cut(s)	114, 134
AsuHPI	GGTGA	1 cut(s)	286
BaeI	ACNNNNGTAYC	2 cut(s)	155, 188
BanII	GRGCYC	1 cut(s)	463
BbrPI	CACGTG	1 cut(s)	635
BbvI	GCAGC	2 cut(s)	148, 259
BccI	CCATC	2 cut(s)	332, 572
BceAI	ACGGC	1 cut(s)	82
BcuI	ACTAGT	1 cut(s)	661
BfaI	CTAG	3 cut(s)	150, 182, 662
BfmI	CTRYAG	1 cut(s)	652
BisI	GCNGC	2 cut(s)	162, 248
BlpI	GCTNAGC	1 cut(s)	417
BlsI	GCNGC	2 cut(s)	163, 249
BmgT120I	GGNCC	2 cut(s)	114, 134
BmrI	ACTGGG	3 cut(s)	88, 141, 223
BmsI	GCATC	3 cut(s)	456, 496, 669
BmuI	ACTGGG	3 cut(s)	88, 141, 223
Bpu10I	CCTNAGC	1 cut(s)	501
Bpu1102I	GCTNAGC	1 cut(s)	417
BsaAI	YACGTR	1 cut(s)	635
BsaWI	WCCGGW	3 cut(s)	8, 50, 278
Bsc4I	CCNNNNNNNGG	1 cut(s)	601
Bse118I	RCCGGY	3 cut(s)	8, 50, 278
Bse1I	ACTGG	8 cut(s)	23, 44, 65, 83, 136, 218, 561, 595
Bse3DI	GCAATG	2 cut(s)	267, 349
BseGI	GGATG	3 cut(s)	511, 583, 684
BseLI	CCNNNNNNNGG	1 cut(s)	601
BseMI	GCAATG	2 cut(s)	267, 349
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	8 cut(s)	23, 44, 65, 83, 136, 218, 561, 595
BseXI	GCAGC	2 cut(s)	148, 259
BsgI	GTGCAG	1 cut(s)	147
Bsh1285I	CGRYCG	1 cut(s)	529
BshFI	GGCC	2 cut(s)	116, 136
BshTI	ACCGGT	3 cut(s)	8, 50, 278
BsiEI	CGRYCG	1 cut(s)	529
BsiSI	CCGG	4 cut(s)	9, 51, 137, 279
BslI	CCNNNNNNNGG	1 cut(s)	601
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	2 cut(s)	116, 136
Bsp1286I	GDGCHC	1 cut(s)	463
Bsp1407I	TGTACA	1 cut(s)	330
Bsp143I	GATC	4 cut(s)	195, 383, 394, 526
Bsp1720I	GCTNAGC	1 cut(s)	417
BspACI	CCGC	1 cut(s)	250
BspANI	GGCC	2 cut(s)	116, 136
BspCNI	CTCAG	1 cut(s)	181
BspHI	TCATGA	1 cut(s)	355
BspPI	GGATC	2 cut(s)	389, 391
BsrDI	GCAATG	2 cut(s)	267, 349
BsrFI	RCCGGY	3 cut(s)	8, 50, 278
BsrGI	TGTACA	1 cut(s)	330
BsrI	ACTGG	8 cut(s)	23, 44, 65, 83, 136, 218, 561, 595
BssAI	RCCGGY	3 cut(s)	8, 50, 278
BssMI	GATC	4 cut(s)	195, 383, 394, 526
Bst4CI	ACNGT	1 cut(s)	656
Bst6I	CTCTTC	1 cut(s)	621
BstAUI	TGTACA	1 cut(s)	330
BstBAI	YACGTR	1 cut(s)	635
BstC8I	GCNNGC	2 cut(s)	96, 118
BstDEI	CTNAG	3 cut(s)	168, 417, 501
BstEII	GGTNACC	1 cut(s)	274
BstF5I	GGATG	3 cut(s)	511, 583, 684
BstKTI	GATC	4 cut(s)	198, 386, 397, 529
BstMBI	GATC	4 cut(s)	195, 383, 394, 526
BstMCI	CGRYCG	1 cut(s)	529
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 348, 506
BstNSI	RCATGY	2 cut(s)	331, 517
BstPI	GGTNACC	1 cut(s)	274
BstSFI	CTRYAG	1 cut(s)	652
BstV1I	GCAGC	2 cut(s)	148, 259
BstX2I	RGATCY	2 cut(s)	383, 394
BstYI	RGATCY	2 cut(s)	383, 394
BsuRI	GGCC	2 cut(s)	116, 136
BtsCI	GGATG	3 cut(s)	511, 583, 684
BtsIMutI	CAGTG	1 cut(s)	602
Cac8I	GCNNGC	2 cut(s)	96, 118
CaiI	CAGNNNCTG	1 cut(s)	175
CciI	TCATGA	1 cut(s)	355
Cfr10I	RCCGGY	3 cut(s)	8, 50, 278
Cfr13I	GGNCC	2 cut(s)	114, 134
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	331, 592
CspAI	ACCGGT	3 cut(s)	8, 50, 278
CviAII	CATG	4 cut(s)	324, 328, 356, 514
CviQI	GTAC	2 cut(s)	331, 592
DdeI	CTNAG	3 cut(s)	168, 417, 501
DpnI	GATC	4 cut(s)	197, 385, 396, 528
DpnII	GATC	4 cut(s)	195, 383, 394, 526
Eam1104I	CTCTTC	1 cut(s)	621
EarI	CTCTTC	1 cut(s)	621
Eco24I	GRGCYC	1 cut(s)	463
Eco57I	CTGAAG	2 cut(s)	225, 254
Eco72I	CACGTG	1 cut(s)	635
Eco91I	GGTNACC	1 cut(s)	274
EcoO65I	GGTNACC	1 cut(s)	274
EcoRI	GAATTC	1 cut(s)	302
EcoT22I	ATGCAT	2 cut(s)	329, 511
EcoT38I	GRGCYC	1 cut(s)	463
FaeI	CATG	4 cut(s)	327, 331, 359, 517
FaiI	YATR	9 cut(s)	320, 325, 329, 357, 377, 511, 515, 545, 704
FatI	CATG	4 cut(s)	323, 327, 355, 513
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	162, 248
FokI	GGATG	3 cut(s)	518, 590, 691
FriOI	GRGCYC	1 cut(s)	463
Fsp4HI	GCNGC	2 cut(s)	162, 248
FspBI	CTAG	3 cut(s)	150, 182, 662
GluI	GCNGC	2 cut(s)	162, 248
HaeIII	GGCC	2 cut(s)	116, 136
HapII	CCGG	4 cut(s)	9, 51, 137, 279
HgaI	GACGC	1 cut(s)	179
Hin1II	CATG	4 cut(s)	327, 331, 359, 517
HincII	GTYRAC	7 cut(s)	6, 16, 27, 37, 48, 58, 659
HindII	GTYRAC	7 cut(s)	6, 16, 27, 37, 48, 58, 659
HindIII	AAGCTT	1 cut(s)	419
HinfI	GANTC	2 cut(s)	140, 644
HpaII	CCGG	4 cut(s)	9, 51, 137, 279
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	8 cut(s)	6, 16, 27, 37, 48, 58, 211, 659
Hpy188I	TCNGA	3 cut(s)	195, 257, 441
Hpy188III	TCNNGA	2 cut(s)	356, 688
Hpy8I	GTNNAC	8 cut(s)	6, 16, 27, 37, 48, 58, 211, 659
HpyAV	CCTTC	3 cut(s)	568, 595, 668
HpyCH4III	ACNGT	1 cut(s)	656
HpyCH4IV	ACGT	2 cut(s)	454, 634
HpyCH4V	TGCA	3 cut(s)	164, 327, 509
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 348, 506
HpyF3I	CTNAG	3 cut(s)	168, 417, 501
HpySE526I	ACGT	2 cut(s)	454, 634
Hsp92II	CATG	4 cut(s)	327, 331, 359, 517
Kzo9I	GATC	4 cut(s)	195, 383, 394, 526
Lsp1109I	GCAGC	2 cut(s)	148, 259
LweI	GCATC	3 cut(s)	456, 496, 669
MaeI	CTAG	3 cut(s)	150, 182, 662
MaeII	ACGT	2 cut(s)	454, 634
MaeIII	GTNAC	2 cut(s)	274, 287
MalI	GATC	4 cut(s)	197, 385, 396, 528
MboI	GATC	4 cut(s)	195, 383, 394, 526
MboII	GAAGA	4 cut(s)	219, 260, 383, 638
MflI	RGATCY	2 cut(s)	383, 394
MhlI	GDGCHC	1 cut(s)	463
MluCI	AATT	1 cut(s)	302
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	3 cut(s)	177, 622, 684
Mph1103I	ATGCAT	2 cut(s)	329, 511
MspA1I	CMGCKG	1 cut(s)	250
MspI	CCGG	4 cut(s)	9, 51, 137, 279
Mva1269I	GAATGC	1 cut(s)	496
MwoI	GCNNNNNNNGC	3 cut(s)	91, 348, 506
NdeII	GATC	4 cut(s)	195, 383, 394, 526
NlaIII	CATG	4 cut(s)	327, 331, 359, 517
NmuCI	GTSAC	2 cut(s)	274, 287
NsiI	ATGCAT	2 cut(s)	329, 511
NspI	RCATGY	2 cut(s)	331, 517
PagI	TCATGA	1 cut(s)	355
PctI	GAATGC	1 cut(s)	496
PfeI	GAWTC	1 cut(s)	644
PinAI	ACCGGT	3 cut(s)	8, 50, 278
PkrI	GCNGC	2 cut(s)	163, 249
Ple19I	CGATCG	1 cut(s)	529
PleI	GAGTC	1 cut(s)	148
PmaCI	CACGTG	1 cut(s)	635
PmlI	CACGTG	1 cut(s)	635
PpsI	GAGTC	1 cut(s)	148
Ppu21I	YACGTR	1 cut(s)	635
PspCI	CACGTG	1 cut(s)	635
PspEI	GGTNACC	1 cut(s)	274
PspPI	GGNCC	2 cut(s)	114, 134
PstNI	CAGNNNCTG	1 cut(s)	175
PsuI	RGATCY	2 cut(s)	383, 394
PvuI	CGATCG	1 cut(s)	529
RsaI	GTAC	2 cut(s)	332, 593
RsaNI	GTAC	2 cut(s)	331, 592
SatI	GCNGC	2 cut(s)	162, 248
Sau3AI	GATC	4 cut(s)	195, 383, 394, 526
Sau96I	GGNCC	2 cut(s)	114, 134
SchI	GAGTC	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	463
SfaNI	GCATC	3 cut(s)	456, 496, 669
SfcI	CTRYAG	1 cut(s)	652
SpeI	ACTAGT	1 cut(s)	661
Sse9I	AATT	1 cut(s)	302
SsiI	CCGC	1 cut(s)	250
SspMI	CTAG	3 cut(s)	150, 182, 662
TaaI	ACNGT	1 cut(s)	656
TaiI	ACGT	2 cut(s)	457, 637
TaqI	TCGA	1 cut(s)	525
TasI	AATT	1 cut(s)	302
TatI	WGTACW	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	644
TscAI	CASTG	1 cut(s)	602
TseFI	GTSAC	2 cut(s)	274, 287
TseI	GCWGC	2 cut(s)	161, 247
Tsp45I	GTSAC	2 cut(s)	274, 287
TspDTI	ATGAA	1 cut(s)	295
TspGWI	ACGGA	2 cut(s)	387, 555
TspRI	CASTG	1 cut(s)	602
XapI	RAATTY	1 cut(s)	302
XceI	RCATGY	2 cut(s)	331, 517
XmiI	GTMKAC	1 cut(s)	210
XspI	CTAG	3 cut(s)	150, 182, 662
Zsp2I	ATGCAT	2 cut(s)	329, 511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.