Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009308

Physical Location & Seq

Genomic Coordinates Reverse (-)

10509547 .. 10512568

Gene Structure 3022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00289860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAAGACGAACAAGGCGACAGTTTTGACCTTTGCTGAGAAGTGCAAGAGTATATTGTCTTCGAATTGGCAAGGGCAGCTCAATACCATCAAGGCTGATGCTAAAGGAAGCAAGGAGGATATTTACACATCGAAGATTAAGTACATATGCAAAAGAGGGAAGCCGTACATTTGGGTACCCGAGAAGGAGTTGCATAATGTGAACTTAATTGTTGATGAACGGAGTTCTTTTTCTGTGGCTACTCCCATCCCAGGGCCACTGGCAAGTTTACTTAGATCAATAAAGAAGTTACCAGCTCGAGTTGCTCTGACTGGAGATGTTGTACCTTTAACCGATGAAAAGGCTCAGTCTGCAACAAAAGTCCTTAGAGAAGTCATGCTATCGGAACAGACAACAATCAGCGCGTCTAGTTATATAGTTTCAGGTGTATTAAGTTCTTCTGACCATAGCCGTACATCGCGGAGTGAAAACCTTAAGGATCTCTTGGAAGGGGATGAAAAGTACATAGTTTATAAGTTCAACCAAAGATCATGCATGTACATTGATGGCAATGGAAGCACTCATGACGTTGACCAAGAAGATATAGGTGGATCTAAAGCAGATCCGTTAGCTCCTTTATCTGCTAAGCTTATTGATGGGATAAATCAGAGTGTAGCAAGACGCAGAGCCCTGATGCTTTTTTGTTTGACATACAAGAATGTCAATGCTAAGGATGCATACATGCTGTCTGTCGATCGCAAGGGATTTGACATATTGAGCAAGGTTGCCGGTCCATTGTTGAAGGATGGCATTGGTCAGTACCAGTGGAAGGAGTTTAGATTTACTTTGAAGGAAGAGGCACGTGATGTTGAATCATTCTGCAGTCAACTAGTAGAAATGGAAGAGGAAGCTGTTAAGGAGGTTTCAAGCCATAGTGGTTTAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2470 Pyrid_oxidase_2

Protein Analysis

308

Amino Acids

34.17

Weight (kDa)

8.42

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04020 AT3G04020 AT3G04020 AT3G04020
fragaria_vesca	FvH4_7g22120
malus_domestica	MD07G1196400.v1.1
prunus_persica	Prupe.2G233400_v2.0.a1
pyrus_communis	pycom07g18450
rosa_chinensis	RchiOBHm_Chr1g0366511
rosa_laevigata	RLG00000027341
rosa_multiflora	Rmu_co8175244.1_g000001 Rmu_sc0011292.1_g000004
rosa_roxburghii	Rroxscaffold_4G00289860 Rroxscaffold_4G00290120
rosa_rugosa	Rorug01G0330500
rosa_samantha	Rh1AG338500 Rh1BG300000 Rh1CG315100 Rh1DG331800 Rh6AG342400
rosa_wichuraiana	Rw1G029970 Rw6G029860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
Acc65I	GGTACC	1 cut(s)	175
AccB1I	GGYRCC	1 cut(s)	175
AccII	CGCG	2 cut(s)	404, 460
AciI	CCGC	1 cut(s)	460
AclWI	GGATC	3 cut(s)	486, 596, 598
AcvI	CACGTG	1 cut(s)	842
AfaI	GTAC	8 cut(s)	143, 167, 177, 324, 454, 503, 539, 800
AfiI	CCNNNNNNNGG	3 cut(s)	251, 252, 808
AflII	CTTAAG	1 cut(s)	473
AgsI	TTSAA	5 cut(s)	520, 781, 829, 851, 906
AhlI	ACTAGT	1 cut(s)	868
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	5 cut(s)	79, 296, 611, 628, 890
AluI	AGCT	5 cut(s)	79, 296, 611, 628, 890
AlwI	GGATC	3 cut(s)	486, 596, 598
Ama87I	CYCGRG	2 cut(s)	179, 297
AoxI	GGCC	1 cut(s)	254
ApeKI	GCWGC	1 cut(s)	76
Asp718I	GGTACC	1 cut(s)	175
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	2 cut(s)	254, 770
AsuII	TTCGAA	1 cut(s)	62
AvaI	CYCGRG	2 cut(s)	179, 297
AvaII	GGWCC	1 cut(s)	770
BanI	GGYRCC	1 cut(s)	175
BanII	GRGCYC	1 cut(s)	670
BarI	GAAGNNNNNNTAC	4 cut(s)	43, 75, 125, 157
BbrPI	CACGTG	1 cut(s)	842
BbsI	GAAGAC	2 cut(s)	11, 51
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	5 cut(s)	95, 254, 539, 629, 779
BceAI	ACGGC	2 cut(s)	148, 435
BciT130I	CCWGG	1 cut(s)	252
BcuI	ACTAGT	1 cut(s)	868
BfaI	CTAG	2 cut(s)	408, 869
BfmI	CTRYAG	1 cut(s)	859
BfrI	CTTAAG	1 cut(s)	473
BisI	GCNGC	1 cut(s)	77
BlpI	GCTNAGC	1 cut(s)	624
BlsI	GCNGC	1 cut(s)	78
Bme1390I	CCNGG	1 cut(s)	252
Bme18I	GGWCC	1 cut(s)	770
BmeT110I	CYCGRG	2 cut(s)	179, 297
BmgT120I	GGNCC	2 cut(s)	254, 770
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	3 cut(s)	88, 663, 703
BpiI	GAAGAC	2 cut(s)	11, 51
BpmI	CTGGAG	1 cut(s)	333
Bpu10I	CCTNAGC	1 cut(s)	708
Bpu1102I	GCTNAGC	1 cut(s)	624
Bpu14I	TTCGAA	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	842
BsaJI	CCNNGG	2 cut(s)	250, 251
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	3 cut(s)	251, 252, 808
Bse118I	RCCGGY	1 cut(s)	767
Bse1I	ACTGG	3 cut(s)	264, 316, 802
Bse3DI	GCAATG	1 cut(s)	556
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	250, 251
BseGI	GGATG	4 cut(s)	246, 499, 718, 790
BseLI	CCNNNNNNNGG	3 cut(s)	251, 252, 808
BseMI	GCAATG	1 cut(s)	556
BseMII	CTCAG	2 cut(s)	27, 359
BseNI	ACTGG	3 cut(s)	264, 316, 802
BseXI	GCAGC	1 cut(s)	88
Bsh1236I	CGCG	2 cut(s)	404, 460
Bsh1285I	CGRYCG	1 cut(s)	736
BshFI	GGCC	1 cut(s)	256
BshNI	GGYRCC	1 cut(s)	175
BsiEI	CGRYCG	1 cut(s)	736
BsiHKCI	CYCGRG	2 cut(s)	179, 297
BsiSI	CCGG	1 cut(s)	768
BslI	CCNNNNNNNGG	3 cut(s)	251, 252, 808
BsnI	GGCC	1 cut(s)	256
BsoBI	CYCGRG	2 cut(s)	179, 297
Bsp119I	TTCGAA	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp1407I	TGTACA	1 cut(s)	537
Bsp143I	GATC	6 cut(s)	275, 478, 527, 590, 601, 733
Bsp1720I	GCTNAGC	1 cut(s)	624
BspACI	CCGC	1 cut(s)	460
BspANI	GGCC	1 cut(s)	256
BspCNI	CTCAG	2 cut(s)	28, 358
BspFNI	CGCG	2 cut(s)	404, 460
BspHI	TCATGA	1 cut(s)	562
BspLI	GGNNCC	1 cut(s)	177
BspMAI	CTGCAG	1 cut(s)	863
BspPI	GGATC	3 cut(s)	486, 596, 598
BspT104I	TTCGAA	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	175
BspTI	CTTAAG	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	556
BsrFI	RCCGGY	1 cut(s)	767
BsrGI	TGTACA	1 cut(s)	537
BsrI	ACTGG	3 cut(s)	264, 316, 802
BssAI	RCCGGY	1 cut(s)	767
BssECI	CCNNGG	2 cut(s)	250, 251
BssMI	GATC	6 cut(s)	275, 478, 527, 590, 601, 733
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	2 cut(s)	828, 876
BstAFI	CTTAAG	1 cut(s)	473
BstAUI	TGTACA	1 cut(s)	537
BstBAI	YACGTR	1 cut(s)	842
BstBI	TTCGAA	1 cut(s)	62
BstDEI	CTNAG	6 cut(s)	36, 272, 345, 365, 624, 708
BstF5I	GGATG	4 cut(s)	246, 499, 718, 790
BstFNI	CGCG	2 cut(s)	404, 460
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	6 cut(s)	278, 481, 530, 593, 604, 736
BstMBI	GATC	6 cut(s)	275, 478, 527, 590, 601, 733
BstMCI	CGRYCG	1 cut(s)	736
BstMWI	GCNNNNNNNGC	5 cut(s)	76, 302, 350, 555, 713
BstNI	CCWGG	1 cut(s)	252
BstNSI	RCATGY	2 cut(s)	538, 724
BstSCI	CCNGG	1 cut(s)	250
BstSFI	CTRYAG	1 cut(s)	859
BstUI	CGCG	2 cut(s)	404, 460
BstV1I	GCAGC	1 cut(s)	88
BstV2I	GAAGAC	2 cut(s)	11, 51
BstX2I	RGATCY	3 cut(s)	478, 590, 601
BstYI	RGATCY	3 cut(s)	478, 590, 601
BsuRI	GGCC	1 cut(s)	256
BtgZI	GCGATG	1 cut(s)	441
BtsCI	GGATG	4 cut(s)	246, 499, 718, 790
BtsIMutI	CAGTG	2 cut(s)	257, 809
CciI	TCATGA	1 cut(s)	562
CfoI	GCGC	1 cut(s)	404
Cfr10I	RCCGGY	1 cut(s)	767
Cfr13I	GGNCC	2 cut(s)	254, 770
CseI	GACGC	2 cut(s)	393, 669
Csp6I	GTAC	8 cut(s)	142, 166, 176, 323, 453, 502, 538, 799
CviAII	CATG	6 cut(s)	376, 531, 535, 563, 721, 924
CviQI	GTAC	8 cut(s)	142, 166, 176, 323, 453, 502, 538, 799
DdeI	CTNAG	6 cut(s)	36, 272, 345, 365, 624, 708
DpnI	GATC	6 cut(s)	277, 480, 529, 592, 603, 735
DpnII	GATC	6 cut(s)	275, 478, 527, 590, 601, 733
Eam1104I	CTCTTC	2 cut(s)	828, 876
EarI	CTCTTC	2 cut(s)	828, 876
Eco24I	GRGCYC	1 cut(s)	670
Eco47I	GGWCC	1 cut(s)	770
Eco72I	CACGTG	1 cut(s)	842
Eco88I	CYCGRG	2 cut(s)	179, 297
EcoRII	CCWGG	1 cut(s)	250
EcoT22I	ATGCAT	2 cut(s)	536, 718
EcoT38I	GRGCYC	1 cut(s)	670
FaeI	CATG	6 cut(s)	379, 534, 538, 566, 724, 927
FalI	AAGNNNNNCTT	2 cut(s)	467, 499
FatI	CATG	6 cut(s)	375, 530, 534, 562, 720, 923
FauNDI	CATATG	1 cut(s)	146
Fnu4HI	GCNGC	1 cut(s)	77
FokI	GGATG	4 cut(s)	233, 506, 725, 797
FriOI	GRGCYC	1 cut(s)	670
Fsp4HI	GCNGC	1 cut(s)	77
FspBI	CTAG	2 cut(s)	408, 869
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	1 cut(s)	77
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	256
HapII	CCGG	1 cut(s)	768
HgaI	GACGC	2 cut(s)	393, 669
HhaI	GCGC	1 cut(s)	404
Hin1II	CATG	6 cut(s)	379, 534, 538, 566, 724, 927
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HincII	GTYRAC	2 cut(s)	571, 866
HindII	GTYRAC	2 cut(s)	571, 866
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	1 cut(s)	851
HpaII	CCGG	1 cut(s)	768
Hpy166II	GTNNAC	4 cut(s)	202, 269, 571, 866
Hpy188I	TCNGA	4 cut(s)	309, 385, 442, 648
Hpy188III	TCNNGA	1 cut(s)	563
Hpy8I	GTNNAC	4 cut(s)	202, 269, 571, 866
HpyAV	CCTTC	5 cut(s)	178, 482, 775, 802, 823
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	2 cut(s)	567, 841
HpyCH4V	TGCA	7 cut(s)	45, 150, 193, 353, 534, 716, 861
HpyF10VI	GCNNNNNNNGC	5 cut(s)	76, 302, 350, 555, 713
HpyF3I	CTNAG	6 cut(s)	36, 272, 345, 365, 624, 708
HpySE526I	ACGT	2 cut(s)	567, 841
Hsp92II	CATG	6 cut(s)	379, 534, 538, 566, 724, 927
HspAI	GCGC	1 cut(s)	402
KpnI	GGTACC	1 cut(s)	179
Kzo9I	GATC	6 cut(s)	275, 478, 527, 590, 601, 733
LmnI	GCTCC	1 cut(s)	616
LpnPI	CCDG	9 cut(s)	237, 245, 264, 297, 306, 408, 683, 781, 815
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	3 cut(s)	88, 663, 703
MaeI	CTAG	2 cut(s)	408, 869
MaeII	ACGT	2 cut(s)	567, 841
MaeIII	GTNAC	1 cut(s)	288
MalI	GATC	6 cut(s)	277, 480, 529, 592, 603, 735
MboI	GATC	6 cut(s)	275, 478, 527, 590, 601, 733
MboII	GAAGA	7 cut(s)	16, 51, 145, 429, 590, 845, 893
MflI	RGATCY	3 cut(s)	478, 590, 601
MhlI	GDGCHC	1 cut(s)	670
MluCI	AATT	2 cut(s)	64, 207
MnlI	CCTC	5 cut(s)	109, 149, 829, 877, 892
Mph1103I	ATGCAT	2 cut(s)	536, 718
MseI	TTAA	6 cut(s)	138, 206, 329, 431, 474, 894
MspCI	CTTAAG	1 cut(s)	473
MspI	CCGG	1 cut(s)	768
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
MvnI	CGCG	2 cut(s)	404, 460
MwoI	GCNNNNNNNGC	5 cut(s)	76, 302, 350, 555, 713
NdeI	CATATG	1 cut(s)	146
NdeII	GATC	6 cut(s)	275, 478, 527, 590, 601, 733
NlaIII	CATG	6 cut(s)	379, 534, 538, 566, 724, 927
NlaIV	GGNNCC	1 cut(s)	177
NsiI	ATGCAT	2 cut(s)	536, 718
NspI	RCATGY	2 cut(s)	538, 724
NspV	TTCGAA	1 cut(s)	62
PaeR7I	CTCGAG	1 cut(s)	297
PagI	TCATGA	1 cut(s)	562
PasI	CCCWGGG	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	851
PkrI	GCNGC	1 cut(s)	78
Ple19I	CGATCG	1 cut(s)	736
PmaCI	CACGTG	1 cut(s)	842
PmlI	CACGTG	1 cut(s)	842
Ppu21I	YACGTR	1 cut(s)	842
PsiI	TTATAA	1 cut(s)	513
Psp6I	CCWGG	1 cut(s)	250
PspCI	CACGTG	1 cut(s)	842
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	2 cut(s)	254, 770
PspXI	VCTCGAGB	1 cut(s)	297
PstI	CTGCAG	1 cut(s)	863
PsuI	RGATCY	3 cut(s)	478, 590, 601
PvuI	CGATCG	1 cut(s)	736
RsaI	GTAC	8 cut(s)	143, 167, 177, 324, 454, 503, 539, 800
RsaNI	GTAC	8 cut(s)	142, 166, 176, 323, 453, 502, 538, 799
SaqAI	TTAA	6 cut(s)	138, 206, 329, 431, 474, 894
SatI	GCNGC	1 cut(s)	77
Sau3AI	GATC	6 cut(s)	275, 478, 527, 590, 601, 733
Sau96I	GGNCC	2 cut(s)	254, 770
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	1 cut(s)	670
SfaNI	GCATC	3 cut(s)	88, 663, 703
SfcI	CTRYAG	1 cut(s)	859
Sfr274I	CTCGAG	1 cut(s)	297
SfuI	TTCGAA	1 cut(s)	62
SinI	GGWCC	1 cut(s)	770
SlaI	CTCGAG	1 cut(s)	297
SmlI	CTYRAG	2 cut(s)	297, 473
SmoI	CTYRAG	2 cut(s)	297, 473
SpeI	ACTAGT	1 cut(s)	868
Sse9I	AATT	2 cut(s)	64, 207
SsiI	CCGC	1 cut(s)	460
SspMI	CTAG	2 cut(s)	408, 869
StyD4I	CCNGG	1 cut(s)	250
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	2 cut(s)	570, 844
TaqI	TCGA	4 cut(s)	62, 131, 298, 732
TasI	AATT	2 cut(s)	64, 207
TatI	WGTACW	3 cut(s)	141, 501, 537
TfiI	GAWTC	1 cut(s)	851
Tru1I	TTAA	6 cut(s)	138, 206, 329, 431, 474, 894
Tru9I	TTAA	6 cut(s)	138, 206, 329, 431, 474, 894
TscAI	CASTG	2 cut(s)	264, 809
TseI	GCWGC	1 cut(s)	76
TspDTI	ATGAA	4 cut(s)	17, 231, 351, 510
TspGWI	ACGGA	2 cut(s)	235, 594
TspRI	CASTG	2 cut(s)	264, 809
Vha464I	CTTAAG	1 cut(s)	473
VpaK11BI	GGWCC	1 cut(s)	770
XceI	RCATGY	2 cut(s)	538, 724
XhoI	CTCGAG	1 cut(s)	297
XspI	CTAG	2 cut(s)	408, 869
Zsp2I	ATGCAT	2 cut(s)	536, 718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.