Rh1BG300000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0009308
Physical Location & Seq
Forward (+)
43474000 .. 43477497
3498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG300000.1

Sequence Viewer

Length: 915 bp
ATGGTAGAGATTTTGATGAGGTTGAAATTATTGCAGAGTATATTGTCTTCGAATTGGCAAGGGCAGCTCAATACCATCAAGGCTGATGCTAAAGGAAGCAAGGAGGATATTTACACATCGAAGATCAAGTACATATGCAAAAGAGGGAAGCCGTACATTTGGGTACCCGAGAAGGAGTTGCATAATGTGAACTTAATTGTTGATGAACGGAGTTCTTTTTCAGTGGCTAATCCCATCCCAGGGCCACTGGCAAGTTTACTTAGATCAATAAAGAAGTTACCAGCTCGAGTTGCTCTGACTGGAGATGTTGTACCTTTAACCGATGAAAAGGCTCAGTCTGCAACAAAAGTCCTTAGAGAAGTCATGCTATCGGAACAGACAGCAATCAGCGCGTCTAGTTATACAGTTTCAGGTGTATTAAGTTCTTCTGACCATAGTCGTACATCGCGGAGTGAAAACCTTAAGGATCTCTTGGAAGGGGATGAAAAGTACATAGTTTATAAGTTCAACCAAAGATCATGCATGTACATTGATGGCAATGGAAGCACTCATGACATTGACCAAGAAGATATAGGTGGATCTAAAGCAGATCCGTTAGCTCCTTTATCTGCTAAGCTTATTGATGGGATAAATCAGAGTGTAGCAAGACGCAGAGCCCTGATGCTTTTTTGTTTGACATACAAGAATGTCAATGCTAAGGATGCATACATGCTGTCTGTCGATCGCAAGGGATTTGACATATTGAGCAAGGTTGCCGGTCCATTGTTGAAGGATGGCATTGGTCAGTACCAGTGGAAGGAGTTTAGATTTACTTTGAAGGAAGAGGCACGTGATGTTGAATCATTCTGCAGTCAACTAGTAGAAATGGAAGAGGATGCTGTTAAGGAGGTTTCAAGCCATAGTGGTTTAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2470 Pyrid_oxidase_2

Protein Analysis

304

Amino Acids

33.81

Weight (kDa)

7.61

Isoelectric Point (pI)

41.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 501
Acc65I GGTACC 1 cut(s) 163
AccB1I GGYRCC 1 cut(s) 163
AccII CGCG 2 cut(s) 392, 448
AciI CCGC 1 cut(s) 448
AclWI GGATC 3 cut(s) 474, 584, 586
AcvI CACGTG 1 cut(s) 830
AfaI GTAC 8 cut(s) 131, 155, 165, 312, 442, 491, 527, 788
AfiI CCNNNNNNNGG 3 cut(s) 239, 240, 796
AflII CTTAAG 1 cut(s) 461
AgsI TTSAA 6 cut(s) 25, 508, 769, 817, 839, 894
AhlI ACTAGT 1 cut(s) 856
AjnI CCWGG 1 cut(s) 238
AluBI AGCT 4 cut(s) 67, 284, 599, 616
AluI AGCT 4 cut(s) 67, 284, 599, 616
AlwI GGATC 3 cut(s) 474, 584, 586
Ama87I CYCGRG 2 cut(s) 167, 285
AoxI GGCC 1 cut(s) 242
ApeKI GCWGC 1 cut(s) 64
Asp718I GGTACC 1 cut(s) 163
AspLEI GCGC 1 cut(s) 392
AspS9I GGNCC 2 cut(s) 242, 758
AsuII TTCGAA 1 cut(s) 50
AvaI CYCGRG 2 cut(s) 167, 285
AvaII GGWCC 1 cut(s) 758
BanI GGYRCC 1 cut(s) 163
BanII GRGCYC 1 cut(s) 658
BarI GAAGNNNNNNTAC 4 cut(s) 31, 63, 113, 145
BbrPI CACGTG 1 cut(s) 830
BbsI GAAGAC 1 cut(s) 39
BbvI GCAGC 1 cut(s) 76
BccI CCATC 5 cut(s) 83, 242, 527, 617, 767
BceAI ACGGC 1 cut(s) 136
BciT130I CCWGG 1 cut(s) 240
BcuI ACTAGT 1 cut(s) 856
BfaI CTAG 2 cut(s) 396, 857
BfmI CTRYAG 1 cut(s) 847
BfrI CTTAAG 1 cut(s) 461
BisI GCNGC 1 cut(s) 65
BlpI GCTNAGC 1 cut(s) 612
BlsI GCNGC 1 cut(s) 66
Bme1390I CCNGG 1 cut(s) 240
Bme18I GGWCC 1 cut(s) 758
BmeT110I CYCGRG 2 cut(s) 167, 285
BmgT120I GGNCC 2 cut(s) 242, 758
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 240
BmsI GCATC 4 cut(s) 76, 651, 691, 865
BoxI GACNNNNGTC 1 cut(s) 435
BpiI GAAGAC 1 cut(s) 39
BpmI CTGGAG 1 cut(s) 321
Bpu10I CCTNAGC 1 cut(s) 696
Bpu1102I GCTNAGC 1 cut(s) 612
Bpu14I TTCGAA 1 cut(s) 50
BsaAI YACGTR 1 cut(s) 830
BsaJI CCNNGG 2 cut(s) 238, 239
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bsc4I CCNNNNNNNGG 3 cut(s) 239, 240, 796
Bse118I RCCGGY 1 cut(s) 755
Bse1I ACTGG 3 cut(s) 252, 304, 790
Bse3DI GCAATG 1 cut(s) 544
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 2 cut(s) 238, 239
BseGI GGATG 5 cut(s) 234, 487, 706, 778, 880
BseLI CCNNNNNNNGG 3 cut(s) 239, 240, 796
BseMI GCAATG 1 cut(s) 544
BseMII CTCAG 1 cut(s) 347
BseNI ACTGG 3 cut(s) 252, 304, 790
BseXI GCAGC 1 cut(s) 76
Bsh1236I CGCG 2 cut(s) 392, 448
Bsh1285I CGRYCG 1 cut(s) 724
BshFI GGCC 1 cut(s) 244
BshNI GGYRCC 1 cut(s) 163
BsiEI CGRYCG 1 cut(s) 724
BsiHKCI CYCGRG 2 cut(s) 167, 285
BsiSI CCGG 1 cut(s) 756
BslI CCNNNNNNNGG 3 cut(s) 239, 240, 796
BsnI GGCC 1 cut(s) 244
BsoBI CYCGRG 2 cut(s) 167, 285
Bsp119I TTCGAA 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 658
Bsp1407I TGTACA 1 cut(s) 525
Bsp143I GATC 7 cut(s) 123, 263, 466, 515, 578, 589, 721
Bsp1720I GCTNAGC 1 cut(s) 612
BspACI CCGC 1 cut(s) 448
BspANI GGCC 1 cut(s) 244
BspCNI CTCAG 1 cut(s) 346
BspFNI CGCG 2 cut(s) 392, 448
BspHI TCATGA 1 cut(s) 550
BspLI GGNNCC 1 cut(s) 165
BspMAI CTGCAG 1 cut(s) 851
BspPI GGATC 3 cut(s) 474, 584, 586
BspT104I TTCGAA 1 cut(s) 50
BspT107I GGYRCC 1 cut(s) 163
BspTI CTTAAG 1 cut(s) 461
BsrDI GCAATG 1 cut(s) 544
BsrFI RCCGGY 1 cut(s) 755
BsrGI TGTACA 1 cut(s) 525
BsrI ACTGG 3 cut(s) 252, 304, 790
BssAI RCCGGY 1 cut(s) 755
BssECI CCNNGG 2 cut(s) 238, 239
BssMI GATC 7 cut(s) 123, 263, 466, 515, 578, 589, 721
Bst2UI CCWGG 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 406
Bst6I CTCTTC 2 cut(s) 816, 864
BstAFI CTTAAG 1 cut(s) 461
BstAUI TGTACA 1 cut(s) 525
BstBAI YACGTR 1 cut(s) 830
BstBI TTCGAA 1 cut(s) 50
BstDEI CTNAG 5 cut(s) 260, 333, 353, 612, 696
BstF5I GGATG 5 cut(s) 234, 487, 706, 778, 880
BstFNI CGCG 2 cut(s) 392, 448
BstHHI GCGC 1 cut(s) 392
BstKTI GATC 7 cut(s) 126, 266, 469, 518, 581, 592, 724
BstMBI GATC 7 cut(s) 123, 263, 466, 515, 578, 589, 721
BstMCI CGRYCG 1 cut(s) 724
BstMWI GCNNNNNNNGC 6 cut(s) 64, 290, 338, 389, 543, 701
BstNI CCWGG 1 cut(s) 240
BstNSI RCATGY 2 cut(s) 526, 712
BstPAI GACNNNNGTC 1 cut(s) 435
BstSCI CCNGG 1 cut(s) 238
BstSFI CTRYAG 1 cut(s) 847
BstUI CGCG 2 cut(s) 392, 448
BstV1I GCAGC 1 cut(s) 76
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 3 cut(s) 466, 578, 589
BstYI RGATCY 3 cut(s) 466, 578, 589
BsuRI GGCC 1 cut(s) 244
BtgZI GCGATG 1 cut(s) 429
BtsCI GGATG 5 cut(s) 234, 487, 706, 778, 880
BtsIMutI CAGTG 3 cut(s) 228, 245, 797
CciI TCATGA 1 cut(s) 550
CfoI GCGC 1 cut(s) 392
Cfr10I RCCGGY 1 cut(s) 755
Cfr13I GGNCC 2 cut(s) 242, 758
CseI GACGC 2 cut(s) 381, 657
Csp6I GTAC 8 cut(s) 130, 154, 164, 311, 441, 490, 526, 787
CviAII CATG 6 cut(s) 364, 519, 523, 551, 709, 912
CviQI GTAC 8 cut(s) 130, 154, 164, 311, 441, 490, 526, 787
DdeI CTNAG 5 cut(s) 260, 333, 353, 612, 696
DpnI GATC 7 cut(s) 125, 265, 468, 517, 580, 591, 723
DpnII GATC 7 cut(s) 123, 263, 466, 515, 578, 589, 721
Eam1104I CTCTTC 2 cut(s) 816, 864
EarI CTCTTC 2 cut(s) 816, 864
Eco24I GRGCYC 1 cut(s) 658
Eco47I GGWCC 1 cut(s) 758
Eco72I CACGTG 1 cut(s) 830
Eco88I CYCGRG 2 cut(s) 167, 285
EcoRII CCWGG 1 cut(s) 238
EcoT22I ATGCAT 2 cut(s) 524, 706
EcoT38I GRGCYC 1 cut(s) 658
FaeI CATG 6 cut(s) 367, 522, 526, 554, 712, 915
FalI AAGNNNNNCTT 2 cut(s) 455, 487
FatI CATG 6 cut(s) 363, 518, 522, 550, 708, 911
FauNDI CATATG 1 cut(s) 134
Fnu4HI GCNGC 1 cut(s) 65
FokI GGATG 5 cut(s) 221, 494, 713, 785, 887
FriOI GRGCYC 1 cut(s) 658
Fsp4HI GCNGC 1 cut(s) 65
FspBI CTAG 2 cut(s) 396, 857
GlaI GCGC 1 cut(s) 391
GluI GCNGC 1 cut(s) 65
GsuI CTGGAG 1 cut(s) 321
HaeIII GGCC 1 cut(s) 244
HapII CCGG 1 cut(s) 756
HgaI GACGC 2 cut(s) 381, 657
HhaI GCGC 1 cut(s) 392
Hin1II CATG 6 cut(s) 367, 522, 526, 554, 712, 915
Hin6I GCGC 1 cut(s) 390
HinP1I GCGC 1 cut(s) 390
HincII GTYRAC 1 cut(s) 854
HindII GTYRAC 1 cut(s) 854
HindIII AAGCTT 1 cut(s) 614
HinfI GANTC 1 cut(s) 839
HpaII CCGG 1 cut(s) 756
Hpy166II GTNNAC 3 cut(s) 190, 257, 854
Hpy188I TCNGA 4 cut(s) 297, 373, 430, 636
Hpy188III TCNNGA 1 cut(s) 551
Hpy8I GTNNAC 3 cut(s) 190, 257, 854
HpyAV CCTTC 5 cut(s) 166, 470, 763, 790, 811
HpyCH4III ACNGT 1 cut(s) 406
HpyCH4IV ACGT 1 cut(s) 829
HpyCH4V TGCA 7 cut(s) 34, 138, 181, 341, 522, 704, 849
HpyF10VI GCNNNNNNNGC 6 cut(s) 64, 290, 338, 389, 543, 701
HpyF3I CTNAG 5 cut(s) 260, 333, 353, 612, 696
HpySE526I ACGT 1 cut(s) 829
Hsp92II CATG 6 cut(s) 367, 522, 526, 554, 712, 915
HspAI GCGC 1 cut(s) 390
KpnI GGTACC 1 cut(s) 167
Kzo9I GATC 7 cut(s) 123, 263, 466, 515, 578, 589, 721
LmnI GCTCC 1 cut(s) 604
LpnPI CCDG 9 cut(s) 225, 233, 252, 285, 294, 396, 671, 769, 803
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 4 cut(s) 76, 651, 691, 865
MaeI CTAG 2 cut(s) 396, 857
MaeII ACGT 1 cut(s) 829
MaeIII GTNAC 1 cut(s) 276
MalI GATC 7 cut(s) 125, 265, 468, 517, 580, 591, 723
MboI GATC 7 cut(s) 123, 263, 466, 515, 578, 589, 721
MboII GAAGA 6 cut(s) 39, 133, 417, 578, 833, 881
MflI RGATCY 3 cut(s) 466, 578, 589
MhlI GDGCHC 1 cut(s) 658
MluCI AATT 3 cut(s) 26, 52, 195
MnlI CCTC 6 cut(s) 12, 97, 137, 817, 865, 880
Mph1103I ATGCAT 2 cut(s) 524, 706
MseI TTAA 5 cut(s) 194, 317, 419, 462, 882
MspCI CTTAAG 1 cut(s) 461
MspI CCGG 1 cut(s) 756
MspR9I CCNGG 1 cut(s) 240
MvaI CCWGG 1 cut(s) 240
MvnI CGCG 2 cut(s) 392, 448
MwoI GCNNNNNNNGC 6 cut(s) 64, 290, 338, 389, 543, 701
NdeI CATATG 1 cut(s) 134
NdeII GATC 7 cut(s) 123, 263, 466, 515, 578, 589, 721
NlaIII CATG 6 cut(s) 367, 522, 526, 554, 712, 915
NlaIV GGNNCC 1 cut(s) 165
NsiI ATGCAT 2 cut(s) 524, 706
NspI RCATGY 2 cut(s) 526, 712
NspV TTCGAA 1 cut(s) 50
PaeR7I CTCGAG 1 cut(s) 285
PagI TCATGA 1 cut(s) 550
PasI CCCWGGG 1 cut(s) 239
PfeI GAWTC 1 cut(s) 839
PkrI GCNGC 1 cut(s) 66
Ple19I CGATCG 1 cut(s) 724
PmaCI CACGTG 1 cut(s) 830
PmlI CACGTG 1 cut(s) 830
Ppu21I YACGTR 1 cut(s) 830
PshAI GACNNNNGTC 1 cut(s) 435
PsiI TTATAA 1 cut(s) 501
Psp6I CCWGG 1 cut(s) 238
PspCI CACGTG 1 cut(s) 830
PspGI CCWGG 1 cut(s) 238
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 2 cut(s) 242, 758
PspXI VCTCGAGB 1 cut(s) 285
PstI CTGCAG 1 cut(s) 851
PsuI RGATCY 3 cut(s) 466, 578, 589
PvuI CGATCG 1 cut(s) 724
RsaI GTAC 8 cut(s) 131, 155, 165, 312, 442, 491, 527, 788
RsaNI GTAC 8 cut(s) 130, 154, 164, 311, 441, 490, 526, 787
SaqAI TTAA 5 cut(s) 194, 317, 419, 462, 882
SatI GCNGC 1 cut(s) 65
Sau3AI GATC 7 cut(s) 123, 263, 466, 515, 578, 589, 721
Sau96I GGNCC 2 cut(s) 242, 758
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 1 cut(s) 658
SfaNI GCATC 4 cut(s) 76, 651, 691, 865
SfcI CTRYAG 1 cut(s) 847
Sfr274I CTCGAG 1 cut(s) 285
SfuI TTCGAA 1 cut(s) 50
SinI GGWCC 1 cut(s) 758
SlaI CTCGAG 1 cut(s) 285
SmlI CTYRAG 2 cut(s) 285, 461
SmoI CTYRAG 2 cut(s) 285, 461
SpeI ACTAGT 1 cut(s) 856
Sse9I AATT 3 cut(s) 26, 52, 195
SsiI CCGC 1 cut(s) 448
SspMI CTAG 2 cut(s) 396, 857
StyD4I CCNGG 1 cut(s) 238
TaaI ACNGT 1 cut(s) 406
TaiI ACGT 1 cut(s) 832
TaqI TCGA 4 cut(s) 50, 119, 286, 720
TasI AATT 3 cut(s) 26, 52, 195
TatI WGTACW 3 cut(s) 129, 489, 525
TfiI GAWTC 1 cut(s) 839
Tru1I TTAA 5 cut(s) 194, 317, 419, 462, 882
Tru9I TTAA 5 cut(s) 194, 317, 419, 462, 882
TscAI CASTG 3 cut(s) 228, 252, 797
TseI GCWGC 1 cut(s) 64
TspDTI ATGAA 3 cut(s) 219, 339, 498
TspGWI ACGGA 2 cut(s) 223, 582
TspRI CASTG 3 cut(s) 228, 252, 797
Vha464I CTTAAG 1 cut(s) 461
VpaK11BI GGWCC 1 cut(s) 758
XceI RCATGY 2 cut(s) 526, 712
XhoI CTCGAG 1 cut(s) 285
XspI CTAG 2 cut(s) 396, 857
Zsp2I ATGCAT 2 cut(s) 524, 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.