pycom07g18450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0009308
Physical Location & Seq
Forward (+)
20877536 .. 20878673
1138 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g18450.3

Sequence Viewer

Length: 531 bp
ATGAGTGAGTCCAGTTATACAGTTTCAGGTGTATTAAGTTCATCTGATCATAGCTGTACATCACGAAGCGAAAGCCTTAAGGAGCTCTTGGAAGGCGATGAAAACTACATAGTTTACAAGTTCAATCAAAGATCGTGTGTGTATGTTGATGGCAGTGGAGACACTCATAAGATTGATACAGAAGATATGGCTGCGTCTAAAGCAGATTTGTTGGCTCCTTTGTCTGCCAAACTCATTGATGGGATAAATCAAAGTGCACCAAGACGCAGAGCGCTAATGCTTTTCTGCTGTACATACTTGAATGCAAATGCAAAGGATGCATACATGCTGTCTATCGACCGTAAGGGTTTTGAGGTGTTGAGCAAGGTTCTGAGTCCTGGGTTTGAGGATGGATTTGGCCAGTTCGAGTGGAAGGAATTTAGACTGTCTTTGGAGGAAGAGGCACATGACGTCGAAGCATTCTGCCGTCAACTTGTGGAAATGGAAGAGGAGGTTGTAAAGGAGGTTTCAGGCCATGGTGGTTTAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2470 Pyrid_oxidase_2

Protein Analysis

177

Amino Acids

19.56

Weight (kDa)

4.69

Isoelectric Point (pI)

51.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 453
AcoI YGGCCR 1 cut(s) 397
AcsI RAATTY 1 cut(s) 416
AcyI GRCGYC 1 cut(s) 450
AfaI GTAC 2 cut(s) 58, 292
AfeI AGCGCT 1 cut(s) 273
AflII CTTAAG 1 cut(s) 77
AgsI TTSAA 2 cut(s) 124, 301
AjnI CCWGG 1 cut(s) 376
AluBI AGCT 2 cut(s) 54, 85
AluI AGCT 2 cut(s) 54, 85
Alw21I GWGCWC 2 cut(s) 87, 259
Alw26I GTCTC 1 cut(s) 153
Alw44I GTGCAC 1 cut(s) 255
Aor51HI AGCGCT 1 cut(s) 273
AoxI GGCC 2 cut(s) 397, 511
ApaLI GTGCAC 1 cut(s) 255
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 1 cut(s) 416
AspLEI GCGC 1 cut(s) 274
BaeGI GKGCMC 1 cut(s) 259
BalI TGGCCA 1 cut(s) 399
BanII GRGCYC 1 cut(s) 87
Bbv12I GWGCWC 2 cut(s) 87, 259
BbvI GCAGC 1 cut(s) 178
BccI CCATC 3 cut(s) 143, 233, 383
BceAI ACGGC 1 cut(s) 450
BciT130I CCWGG 1 cut(s) 378
BclI TGATCA 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 153
BfoI RGCGCY 1 cut(s) 275
BfrI CTTAAG 1 cut(s) 77
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
Bme1390I CCNGG 1 cut(s) 378
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 378
BmsI GCATC 1 cut(s) 307
BsaHI GRCGYC 1 cut(s) 450
BsaJI CCNNGG 2 cut(s) 377, 514
Bse1I ACTGG 2 cut(s) 12, 400
BseBI CCWGG 1 cut(s) 378
BseDI CCNNGG 2 cut(s) 377, 514
BseGI GGATG 2 cut(s) 322, 394
BseMII CTCAG 1 cut(s) 362
BseNI ACTGG 2 cut(s) 12, 400
BseRI GAGGAG 1 cut(s) 503
BseSI GKGCMC 1 cut(s) 259
BseXI GCAGC 1 cut(s) 178
Bsh1285I CGRYCG 1 cut(s) 340
BshFI GGCC 2 cut(s) 399, 513
BsiEI CGRYCG 1 cut(s) 340
BsiHKAI GWGCWC 2 cut(s) 87, 259
BsmAI GTCTC 1 cut(s) 153
BsmI GAATGC 2 cut(s) 307, 458
BsnI GGCC 2 cut(s) 399, 513
Bsp1286I GDGCHC 2 cut(s) 87, 259
Bsp1407I TGTACA 2 cut(s) 56, 290
Bsp143I GATC 2 cut(s) 46, 131
Bsp19I CCATGG 1 cut(s) 514
BspANI GGCC 2 cut(s) 399, 513
BspCNI CTCAG 1 cut(s) 363
BspLI GGNNCC 1 cut(s) 216
BspTI CTTAAG 1 cut(s) 77
BsrGI TGTACA 2 cut(s) 56, 290
BsrI ACTGG 2 cut(s) 12, 400
BssECI CCNNGG 2 cut(s) 377, 514
BssMI GATC 2 cut(s) 46, 131
BssNI GRCGYC 1 cut(s) 450
BssT1I CCWWGG 1 cut(s) 514
Bst2UI CCWGG 1 cut(s) 378
Bst4CI ACNGT 3 cut(s) 22, 341, 426
Bst6I CTCTTC 2 cut(s) 432, 480
BstACI GRCGYC 1 cut(s) 450
BstAFI CTTAAG 1 cut(s) 77
BstAPI GCANNNNNTGC 1 cut(s) 317
BstAUI TGTACA 2 cut(s) 56, 290
BstDEI CTNAG 1 cut(s) 371
BstDSI CCRYGG 1 cut(s) 514
BstF5I GGATG 2 cut(s) 322, 394
BstH2I RGCGCY 1 cut(s) 275
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 2 cut(s) 49, 134
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 2 cut(s) 46, 131
BstMCI CGRYCG 1 cut(s) 340
BstMWI GCNNNNNNNGC 2 cut(s) 200, 317
BstNI CCWGG 1 cut(s) 378
BstNSI RCATGY 1 cut(s) 328
BstSCI CCNGG 1 cut(s) 376
BstSLI GKGCMC 1 cut(s) 259
BstV1I GCAGC 1 cut(s) 178
BsuRI GGCC 2 cut(s) 399, 513
BtgI CCRYGG 1 cut(s) 514
BtgZI GCGATG 1 cut(s) 111
BtsCI GGATG 2 cut(s) 322, 394
BtsI GCAGTG 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 160
CfoI GCGC 1 cut(s) 274
CseI GACGC 2 cut(s) 183, 273
Csp6I GTAC 2 cut(s) 57, 291
CviAII CATG 3 cut(s) 325, 446, 515
CviJI RGCY 7 cut(s) 54, 75, 85, 191, 215, 399, 513
CviKI_1 RGCY 7 cut(s) 54, 75, 85, 191, 215, 399, 513
CviQI GTAC 2 cut(s) 57, 291
DdeI CTNAG 1 cut(s) 371
DpnI GATC 2 cut(s) 48, 133
DpnII GATC 2 cut(s) 46, 131
EaeI YGGCCR 1 cut(s) 397
Eam1104I CTCTTC 2 cut(s) 432, 480
EarI CTCTTC 2 cut(s) 432, 480
Ecl136II GAGCTC 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 514
Eco24I GRGCYC 1 cut(s) 87
Eco47III AGCGCT 1 cut(s) 273
Eco53kI GAGCTC 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 376
EcoT14I CCWWGG 1 cut(s) 514
EcoT22I ATGCAT 1 cut(s) 322
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 514
FaeI CATG 3 cut(s) 328, 449, 518
FalI AAGNNNNNCTT 2 cut(s) 71, 103
FatI CATG 3 cut(s) 324, 445, 514
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 1 cut(s) 192
FokI GGATG 2 cut(s) 329, 401
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 192
GlaI GCGC 1 cut(s) 273
GluI GCNGC 1 cut(s) 192
HaeII RGCGCY 1 cut(s) 275
HaeIII GGCC 2 cut(s) 399, 513
HgaI GACGC 2 cut(s) 183, 273
HhaI GCGC 1 cut(s) 274
Hin1I GRCGYC 1 cut(s) 450
Hin1II CATG 3 cut(s) 328, 449, 518
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HincII GTYRAC 1 cut(s) 470
HindII GTYRAC 1 cut(s) 470
HinfI GANTC 2 cut(s) 8, 373
Hpy166II GTNNAC 3 cut(s) 115, 257, 470
Hpy188I TCNGA 2 cut(s) 46, 372
Hpy188III TCNNGA 1 cut(s) 63
Hpy8I GTNNAC 3 cut(s) 115, 257, 470
Hpy99I CGWCG 1 cut(s) 455
HpyAV CCTTC 2 cut(s) 86, 406
HpyCH4III ACNGT 3 cut(s) 22, 341, 426
HpyCH4IV ACGT 1 cut(s) 450
HpyCH4V TGCA 4 cut(s) 257, 305, 311, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 317
HpyF3I CTNAG 1 cut(s) 371
HpySE526I ACGT 1 cut(s) 450
Hsp92I GRCGYC 1 cut(s) 450
Hsp92II CATG 3 cut(s) 328, 449, 518
HspAI GCGC 1 cut(s) 272
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 2 cut(s) 46, 131
LmnI GCTCC 2 cut(s) 82, 220
LpnPI CCDG 6 cut(s) 12, 25, 363, 390, 413, 495
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 1 cut(s) 307
MaeII ACGT 1 cut(s) 450
MalI GATC 2 cut(s) 48, 133
MboI GATC 2 cut(s) 46, 131
MboII GAAGA 3 cut(s) 194, 449, 497
MhlI GDGCHC 2 cut(s) 87, 259
MlsI TGGCCA 1 cut(s) 399
MluCI AATT 1 cut(s) 416
MluNI TGGCCA 1 cut(s) 399
MlyI GAGTC 2 cut(s) 17, 382
MnlI CCTC 7 cut(s) 346, 379, 427, 433, 481, 484, 496
Mox20I TGGCCA 1 cut(s) 399
Mph1103I ATGCAT 1 cut(s) 322
MscI TGGCCA 1 cut(s) 399
MseI TTAA 2 cut(s) 35, 78
Msp20I TGGCCA 1 cut(s) 399
MspCI CTTAAG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 378
Mva1269I GAATGC 2 cut(s) 307, 458
MvaI CCWGG 1 cut(s) 378
MwoI GCNNNNNNNGC 2 cut(s) 200, 317
NcoI CCATGG 1 cut(s) 514
NdeII GATC 2 cut(s) 46, 131
NlaIII CATG 3 cut(s) 328, 449, 518
NlaIV GGNNCC 1 cut(s) 216
NsiI ATGCAT 1 cut(s) 322
NspI RCATGY 1 cut(s) 328
PctI GAATGC 2 cut(s) 307, 458
PkrI GCNGC 1 cut(s) 193
PleI GAGTC 2 cut(s) 16, 381
PpsI GAGTC 2 cut(s) 16, 381
Psp124BI GAGCTC 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 376
PspGI CCWGG 1 cut(s) 376
PspN4I GGNNCC 1 cut(s) 216
RsaI GTAC 2 cut(s) 58, 292
RsaNI GTAC 2 cut(s) 57, 291
SacI GAGCTC 1 cut(s) 87
SaqAI TTAA 2 cut(s) 35, 78
SatI GCNGC 1 cut(s) 192
Sau3AI GATC 2 cut(s) 46, 131
SchI GAGTC 2 cut(s) 17, 382
ScrFI CCNGG 1 cut(s) 378
SduI GDGCHC 2 cut(s) 87, 259
SetI ASST 8 cut(s) 31, 56, 87, 357, 369, 453, 495, 507
SfaNI GCATC 1 cut(s) 307
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 1 cut(s) 416
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 1 cut(s) 376
StyI CCWWGG 1 cut(s) 514
TaaI ACNGT 3 cut(s) 22, 341, 426
TaiI ACGT 1 cut(s) 453
TaqI TCGA 3 cut(s) 336, 405, 453
TasI AATT 1 cut(s) 416
TatI WGTACW 2 cut(s) 56, 290
Tru1I TTAA 2 cut(s) 35, 78
Tru9I TTAA 2 cut(s) 35, 78
TscAI CASTG 1 cut(s) 160
TseI GCWGC 1 cut(s) 191
TspDTI ATGAA 2 cut(s) 30, 114
TspRI CASTG 1 cut(s) 160
Vha464I CTTAAG 1 cut(s) 77
VneI GTGCAC 1 cut(s) 255
XapI RAATTY 1 cut(s) 416
XceI RCATGY 1 cut(s) 328
ZraI GACGTC 1 cut(s) 451
Zsp2I ATGCAT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.