Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009308

Physical Location & Seq

Genomic Coordinates Reverse (-)

10701358 .. 10704615

Gene Structure 3258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00290120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGAAGACGAACAAGGCGACAGTTTTGACCTTTGCTGAGAAGTGCAAGAGTATATTGTCTTCGAATTGGCAAGGGCAGCTCAATACCATCAAGGCTGATGCTAAAGGAAGCAAGGAGGATATTTACACATCGAAGATTAAGTACATATGCAAAAGAGGGAAGCCGTACATTTGGGTACCCGAGAAGGAGTTGCATAATGTGAACTTAATTGTTGATGAACGGAGTTCTTTTTCTGTGGCTACTCCCATCCCAGGGCCACTGGCAAGTTTACTTAGATCAATAAAGAAGTTACCAGCTCGAGTTGCTCTGACTGGAGATGTTGTACCTTTAACCGATGAAAAGGCTCAGTCTGCAACAAAAGTCCTTAGAGAAGTCATGCTATCGGAACAGACAACAATCAGCGCGTCTAGTTATATAGTTTCAGGTGTATTAAGTTCTTCTGACCATAGCCGTACATCGCGGAGTGAAAACCTTAAGGATCTCTTGGAAGGGGATGAAAAGTACATAGTTTATAAGTCTTTTTTGTCCAGATCATGCATGTACATTGATGGCAATGGAAGCACTCATGACGTTGACCAAGAAGATATAGGTGGATCTAAAGCAGATCCGTTAGCTCCTTTATCTGCTAAGCTTATTGATGGGATAAATCAGAGTGTAGCAAGACGCAGAGCCCTGATGCTTTTTTGTTTGACATACAAGAATGTCAATGCTAAGGATGCATACATGCTGTCTGTCGATCGCAAGGGATTTGACATATTGAGCAAGGTTGCCGGTCCATTGTTGAAGGATGGCATTGGTCAGTACCAGTGGAAGGAGTTTAGATTTACTTTGAAGGAAGAGGCACGTGATGTTGAATCATTCTGCAGTCAACTAGTAGAAATGGAAGAGGAAGCTGTTAAGGAGGTTTCAAGCCATAGTGGTTTAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2470 Pyrid_oxidase_2

Protein Analysis

309

Amino Acids

34.21

Weight (kDa)

8.42

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04020 AT3G04020 AT3G04020 AT3G04020
fragaria_vesca	FvH4_7g22120
malus_domestica	MD07G1196400.v1.1
prunus_persica	Prupe.2G233400_v2.0.a1
pyrus_communis	pycom07g18450
rosa_chinensis	RchiOBHm_Chr1g0366511
rosa_laevigata	RLG00000027341
rosa_multiflora	Rmu_co8175244.1_g000001 Rmu_sc0011292.1_g000004
rosa_roxburghii	Rroxscaffold_4G00289860 Rroxscaffold_4G00290120
rosa_rugosa	Rorug01G0330500
rosa_samantha	Rh1AG338500 Rh1BG300000 Rh1CG315100 Rh1DG331800 Rh6AG342400
rosa_wichuraiana	Rw1G029970 Rw6G029860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
Acc65I	GGTACC	1 cut(s)	175
AccB1I	GGYRCC	1 cut(s)	175
AccII	CGCG	2 cut(s)	404, 460
AciI	CCGC	1 cut(s)	460
AclWI	GGATC	3 cut(s)	486, 599, 601
AcvI	CACGTG	1 cut(s)	845
AfaI	GTAC	8 cut(s)	143, 167, 177, 324, 454, 503, 542, 803
AfiI	CCNNNNNNNGG	3 cut(s)	251, 252, 811
AflII	CTTAAG	1 cut(s)	473
AgsI	TTSAA	4 cut(s)	784, 832, 854, 909
AhlI	ACTAGT	1 cut(s)	871
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	5 cut(s)	79, 296, 614, 631, 893
AluI	AGCT	5 cut(s)	79, 296, 614, 631, 893
AlwI	GGATC	3 cut(s)	486, 599, 601
Ama87I	CYCGRG	2 cut(s)	179, 297
AoxI	GGCC	1 cut(s)	254
ApeKI	GCWGC	1 cut(s)	76
Asp718I	GGTACC	1 cut(s)	175
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	2 cut(s)	254, 773
AsuII	TTCGAA	1 cut(s)	62
AvaI	CYCGRG	2 cut(s)	179, 297
AvaII	GGWCC	1 cut(s)	773
BanI	GGYRCC	1 cut(s)	175
BanII	GRGCYC	1 cut(s)	673
BarI	GAAGNNNNNNTAC	4 cut(s)	43, 75, 125, 157
BbrPI	CACGTG	1 cut(s)	845
BbsI	GAAGAC	2 cut(s)	11, 51
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	5 cut(s)	95, 254, 542, 632, 782
BceAI	ACGGC	2 cut(s)	148, 435
BciT130I	CCWGG	1 cut(s)	252
BcuI	ACTAGT	1 cut(s)	871
BfaI	CTAG	2 cut(s)	408, 872
BfmI	CTRYAG	1 cut(s)	862
BfrI	CTTAAG	1 cut(s)	473
BisI	GCNGC	1 cut(s)	77
BlpI	GCTNAGC	1 cut(s)	627
BlsI	GCNGC	1 cut(s)	78
Bme1390I	CCNGG	1 cut(s)	252
Bme18I	GGWCC	1 cut(s)	773
BmeT110I	CYCGRG	2 cut(s)	179, 297
BmgT120I	GGNCC	2 cut(s)	254, 773
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	3 cut(s)	88, 666, 706
BpiI	GAAGAC	2 cut(s)	11, 51
BpmI	CTGGAG	1 cut(s)	333
Bpu10I	CCTNAGC	1 cut(s)	711
Bpu1102I	GCTNAGC	1 cut(s)	627
Bpu14I	TTCGAA	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	845
BsaJI	CCNNGG	2 cut(s)	250, 251
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	3 cut(s)	251, 252, 811
Bse118I	RCCGGY	1 cut(s)	770
Bse1I	ACTGG	3 cut(s)	264, 316, 805
Bse3DI	GCAATG	1 cut(s)	559
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	250, 251
BseGI	GGATG	4 cut(s)	246, 499, 721, 793
BseLI	CCNNNNNNNGG	3 cut(s)	251, 252, 811
BseMI	GCAATG	1 cut(s)	559
BseMII	CTCAG	2 cut(s)	27, 359
BseNI	ACTGG	3 cut(s)	264, 316, 805
BseXI	GCAGC	1 cut(s)	88
Bsh1236I	CGCG	2 cut(s)	404, 460
Bsh1285I	CGRYCG	1 cut(s)	739
BshFI	GGCC	1 cut(s)	256
BshNI	GGYRCC	1 cut(s)	175
BsiEI	CGRYCG	1 cut(s)	739
BsiHKCI	CYCGRG	2 cut(s)	179, 297
BsiSI	CCGG	1 cut(s)	771
BslI	CCNNNNNNNGG	3 cut(s)	251, 252, 811
BsnI	GGCC	1 cut(s)	256
BsoBI	CYCGRG	2 cut(s)	179, 297
Bsp119I	TTCGAA	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	673
Bsp1407I	TGTACA	1 cut(s)	540
Bsp143I	GATC	6 cut(s)	275, 478, 530, 593, 604, 736
Bsp1720I	GCTNAGC	1 cut(s)	627
BspACI	CCGC	1 cut(s)	460
BspANI	GGCC	1 cut(s)	256
BspCNI	CTCAG	2 cut(s)	28, 358
BspFNI	CGCG	2 cut(s)	404, 460
BspHI	TCATGA	1 cut(s)	565
BspLI	GGNNCC	1 cut(s)	177
BspMAI	CTGCAG	1 cut(s)	866
BspPI	GGATC	3 cut(s)	486, 599, 601
BspT104I	TTCGAA	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	175
BspTI	CTTAAG	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	559
BsrFI	RCCGGY	1 cut(s)	770
BsrGI	TGTACA	1 cut(s)	540
BsrI	ACTGG	3 cut(s)	264, 316, 805
BssAI	RCCGGY	1 cut(s)	770
BssECI	CCNNGG	2 cut(s)	250, 251
BssMI	GATC	6 cut(s)	275, 478, 530, 593, 604, 736
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	2 cut(s)	831, 879
BstAFI	CTTAAG	1 cut(s)	473
BstAUI	TGTACA	1 cut(s)	540
BstBAI	YACGTR	1 cut(s)	845
BstBI	TTCGAA	1 cut(s)	62
BstDEI	CTNAG	6 cut(s)	36, 272, 345, 365, 627, 711
BstF5I	GGATG	4 cut(s)	246, 499, 721, 793
BstFNI	CGCG	2 cut(s)	404, 460
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	6 cut(s)	278, 481, 533, 596, 607, 739
BstMBI	GATC	6 cut(s)	275, 478, 530, 593, 604, 736
BstMCI	CGRYCG	1 cut(s)	739
BstMWI	GCNNNNNNNGC	5 cut(s)	76, 302, 350, 558, 716
BstNI	CCWGG	1 cut(s)	252
BstNSI	RCATGY	2 cut(s)	541, 727
BstSCI	CCNGG	1 cut(s)	250
BstSFI	CTRYAG	1 cut(s)	862
BstUI	CGCG	2 cut(s)	404, 460
BstV1I	GCAGC	1 cut(s)	88
BstV2I	GAAGAC	2 cut(s)	11, 51
BstX2I	RGATCY	3 cut(s)	478, 593, 604
BstYI	RGATCY	3 cut(s)	478, 593, 604
BsuRI	GGCC	1 cut(s)	256
BtgZI	GCGATG	1 cut(s)	441
BtsCI	GGATG	4 cut(s)	246, 499, 721, 793
BtsIMutI	CAGTG	2 cut(s)	257, 812
CciI	TCATGA	1 cut(s)	565
CfoI	GCGC	1 cut(s)	404
Cfr10I	RCCGGY	1 cut(s)	770
Cfr13I	GGNCC	2 cut(s)	254, 773
CseI	GACGC	2 cut(s)	393, 672
Csp6I	GTAC	8 cut(s)	142, 166, 176, 323, 453, 502, 541, 802
CviAII	CATG	6 cut(s)	376, 534, 538, 566, 724, 927
CviQI	GTAC	8 cut(s)	142, 166, 176, 323, 453, 502, 541, 802
DdeI	CTNAG	6 cut(s)	36, 272, 345, 365, 627, 711
DpnI	GATC	6 cut(s)	277, 480, 532, 595, 606, 738
DpnII	GATC	6 cut(s)	275, 478, 530, 593, 604, 736
Eam1104I	CTCTTC	2 cut(s)	831, 879
EarI	CTCTTC	2 cut(s)	831, 879
Eco24I	GRGCYC	1 cut(s)	673
Eco47I	GGWCC	1 cut(s)	773
Eco72I	CACGTG	1 cut(s)	845
Eco88I	CYCGRG	2 cut(s)	179, 297
EcoRII	CCWGG	1 cut(s)	250
EcoT22I	ATGCAT	2 cut(s)	539, 721
EcoT38I	GRGCYC	1 cut(s)	673
FaeI	CATG	6 cut(s)	379, 537, 541, 569, 727, 930
FalI	AAGNNNNNCTT	2 cut(s)	467, 499
FatI	CATG	6 cut(s)	375, 533, 537, 565, 723, 926
FauNDI	CATATG	1 cut(s)	146
Fnu4HI	GCNGC	1 cut(s)	77
FokI	GGATG	4 cut(s)	233, 506, 728, 800
FriOI	GRGCYC	1 cut(s)	673
Fsp4HI	GCNGC	1 cut(s)	77
FspBI	CTAG	2 cut(s)	408, 872
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	1 cut(s)	77
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	256
HapII	CCGG	1 cut(s)	771
HgaI	GACGC	2 cut(s)	393, 672
HhaI	GCGC	1 cut(s)	404
Hin1II	CATG	6 cut(s)	379, 537, 541, 569, 727, 930
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HincII	GTYRAC	2 cut(s)	574, 869
HindII	GTYRAC	2 cut(s)	574, 869
HindIII	AAGCTT	1 cut(s)	629
HinfI	GANTC	1 cut(s)	854
HpaII	CCGG	1 cut(s)	771
Hpy166II	GTNNAC	4 cut(s)	202, 269, 574, 869
Hpy188I	TCNGA	4 cut(s)	309, 385, 442, 651
Hpy188III	TCNNGA	2 cut(s)	528, 566
Hpy8I	GTNNAC	4 cut(s)	202, 269, 574, 869
HpyAV	CCTTC	5 cut(s)	178, 482, 778, 805, 826
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	2 cut(s)	570, 844
HpyCH4V	TGCA	7 cut(s)	45, 150, 193, 353, 537, 719, 864
HpyF10VI	GCNNNNNNNGC	5 cut(s)	76, 302, 350, 558, 716
HpyF3I	CTNAG	6 cut(s)	36, 272, 345, 365, 627, 711
HpySE526I	ACGT	2 cut(s)	570, 844
Hsp92II	CATG	6 cut(s)	379, 537, 541, 569, 727, 930
HspAI	GCGC	1 cut(s)	402
KpnI	GGTACC	1 cut(s)	179
Kzo9I	GATC	6 cut(s)	275, 478, 530, 593, 604, 736
LmnI	GCTCC	1 cut(s)	619
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	3 cut(s)	88, 666, 706
MaeI	CTAG	2 cut(s)	408, 872
MaeII	ACGT	2 cut(s)	570, 844
MaeIII	GTNAC	1 cut(s)	288
MalI	GATC	6 cut(s)	277, 480, 532, 595, 606, 738
MboI	GATC	6 cut(s)	275, 478, 530, 593, 604, 736
MboII	GAAGA	7 cut(s)	16, 51, 145, 429, 593, 848, 896
MflI	RGATCY	3 cut(s)	478, 593, 604
MhlI	GDGCHC	1 cut(s)	673
MluCI	AATT	2 cut(s)	64, 207
MnlI	CCTC	5 cut(s)	109, 149, 832, 880, 895
Mph1103I	ATGCAT	2 cut(s)	539, 721
MseI	TTAA	6 cut(s)	138, 206, 329, 431, 474, 897
MspCI	CTTAAG	1 cut(s)	473
MspI	CCGG	1 cut(s)	771
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
MvnI	CGCG	2 cut(s)	404, 460
MwoI	GCNNNNNNNGC	5 cut(s)	76, 302, 350, 558, 716
NdeI	CATATG	1 cut(s)	146
NdeII	GATC	6 cut(s)	275, 478, 530, 593, 604, 736
NlaIII	CATG	6 cut(s)	379, 537, 541, 569, 727, 930
NlaIV	GGNNCC	1 cut(s)	177
NsiI	ATGCAT	2 cut(s)	539, 721
NspI	RCATGY	2 cut(s)	541, 727
NspV	TTCGAA	1 cut(s)	62
PaeR7I	CTCGAG	1 cut(s)	297
PagI	TCATGA	1 cut(s)	565
PasI	CCCWGGG	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	854
PkrI	GCNGC	1 cut(s)	78
Ple19I	CGATCG	1 cut(s)	739
PmaCI	CACGTG	1 cut(s)	845
PmlI	CACGTG	1 cut(s)	845
Ppu21I	YACGTR	1 cut(s)	845
PsiI	TTATAA	1 cut(s)	513
Psp6I	CCWGG	1 cut(s)	250
PspCI	CACGTG	1 cut(s)	845
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	2 cut(s)	254, 773
PspXI	VCTCGAGB	1 cut(s)	297
PstI	CTGCAG	1 cut(s)	866
PsuI	RGATCY	3 cut(s)	478, 593, 604
PvuI	CGATCG	1 cut(s)	739
RsaI	GTAC	8 cut(s)	143, 167, 177, 324, 454, 503, 542, 803
RsaNI	GTAC	8 cut(s)	142, 166, 176, 323, 453, 502, 541, 802
SaqAI	TTAA	6 cut(s)	138, 206, 329, 431, 474, 897
SatI	GCNGC	1 cut(s)	77
Sau3AI	GATC	6 cut(s)	275, 478, 530, 593, 604, 736
Sau96I	GGNCC	2 cut(s)	254, 773
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	1 cut(s)	673
SfaNI	GCATC	3 cut(s)	88, 666, 706
SfcI	CTRYAG	1 cut(s)	862
Sfr274I	CTCGAG	1 cut(s)	297
SfuI	TTCGAA	1 cut(s)	62
SinI	GGWCC	1 cut(s)	773
SlaI	CTCGAG	1 cut(s)	297
SmlI	CTYRAG	2 cut(s)	297, 473
SmoI	CTYRAG	2 cut(s)	297, 473
SpeI	ACTAGT	1 cut(s)	871
Sse9I	AATT	2 cut(s)	64, 207
SsiI	CCGC	1 cut(s)	460
SspMI	CTAG	2 cut(s)	408, 872
StyD4I	CCNGG	1 cut(s)	250
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	2 cut(s)	573, 847
TaqI	TCGA	4 cut(s)	62, 131, 298, 735
TasI	AATT	2 cut(s)	64, 207
TatI	WGTACW	3 cut(s)	141, 501, 540
TfiI	GAWTC	1 cut(s)	854
Tru1I	TTAA	6 cut(s)	138, 206, 329, 431, 474, 897
Tru9I	TTAA	6 cut(s)	138, 206, 329, 431, 474, 897
TscAI	CASTG	2 cut(s)	264, 812
TseI	GCWGC	1 cut(s)	76
TspDTI	ATGAA	4 cut(s)	17, 231, 351, 510
TspGWI	ACGGA	2 cut(s)	235, 597
TspRI	CASTG	2 cut(s)	264, 812
Vha464I	CTTAAG	1 cut(s)	473
VpaK11BI	GGWCC	1 cut(s)	773
XceI	RCATGY	2 cut(s)	541, 727
XhoI	CTCGAG	1 cut(s)	297
XspI	CTAG	2 cut(s)	408, 872
Zsp2I	ATGCAT	2 cut(s)	539, 721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.