AT3G05100

Has 53 Blast hits to 53 proteins in 21 species Archae - 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013395
Physical Location & Seq
Forward (+)
1424057 .. 1426563
2507 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G05100.1

Sequence Viewer

Length: 1011 bp
ATGGCGTTTTCCTCCTCTTCTTCTTCTCCGGCGATGCAGAAAGGAATCTTTGTCTCCATGCCTGTACTTGTTCTCACCGTTTCCTTTGTAGCTGCTGTCTTCTTCCTCCTCTCTTCTTCTTTCTCCTCTTGCTCCTGTCCTGAAGCTTTATCTTCTTCCCCGACCGACGCCGTTGAAGCTTCTGTCGGTGGAAGCGGTGGTGATGTGAGATTTGAGGACAGGATATCTCCGACGCAGGATGATATTGAGTGGGTTAGAGATCTGATTAGATCCAACGGTTTGCATATGCAGAAGAATGAGCTTCGTAAAGGGATTAATCCTCGCACTAGAGATCAACAACTTGCAGATCTGATACAGTACAAGGGTATATCCCATTACGAAGGAGATGAAGCAAACAACCACACAGCTCTTCCATGTCCTGGTGAGTTACTAGTTGAGCAGCATCACAGCAACTATGGTGAACCTTGGGCAGGTGGGCGCGATGTATTCGAGTTCTTAGCTGAATCATCCAGTCTTAAACCAAACTCTCGTGTTCTAGAAATTGGATGTGGCACGTTACGCGTGGGTTTGCATTTCATTCGCTATCTTAGTCCCCAACATTTTCACTGCCTTGAAAAGGACGAGCTTTCTCTAATGGCTGCTTTGAGGTACGAGCTTCCATCACAAGGACTTCTACATAAACGACCTCTTATAGTCAGAGGCGATGATATGGAATTCAGCAAGTTTGGTTCAGATACAGCCTATGATCTGATATACGCAAGTGCAGTCTTTCTCCACATGCCTGATAAACTCGTGTGGACTGGACTCGAAAGATTAGTAGACAGGTTAAAACCTTACGACGGGAGAATCTTCGTGTCACATAACGTAAAGTTTTGTTCACGGTTAGGACAAGACAAGTGTTCTCAGAAGCTAGCAAGTTTAGGACTTGAGTATCTTGGAAAACAAACACATGATAGCTTGCTGTTTAATCACTATGAGATCTGGTTCGGGTTTAGACGGTTTAAAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_23

Protein Analysis

336

Amino Acids

37.72

Weight (kDa)

6.23

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_12 PF08242 179 - 282 1.5e-08 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013395)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05100
fragaria_vesca FvH4_6g03940
malus_domestica MD04G1217100.v1.1 MD12G1234100.v1.1
prunus_persica Prupe.6G337200_v2.0.a1 Prupe.6G337200_v2.0.a1
pyrus_communis pycom04g19320 pycom12g21650 pycom16g23200
rosa_chinensis RchiOBHm_Chr3g0452511
rosa_laevigata RLG00000025596
rosa_roxburghii Rroxscaffold_6G00429540
rosa_rugosa Rorug02G0641200
rosa_samantha Rh3AG043200 Rh3BG044900 Rh3CG043500 Rh3DG044300
rosa_wichuraiana Rw3G003350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 461
Acc36I ACCTGC 1 cut(s) 461
AccB7I CCANNNNNTGG 1 cut(s) 419
AccI GTMKAC 1 cut(s) 819
AccII CGCG 2 cut(s) 480, 561
AciI CCGC 1 cut(s) 195
AclWI GGATC 1 cut(s) 264
AcsI RAATTY 1 cut(s) 713
AcuI CTGAAG 1 cut(s) 162
AcyI GRCGYC 1 cut(s) 168
AfaI GTAC 3 cut(s) 66, 359, 650
AfiI CCNNNNNNNGG 5 cut(s) 419, 470, 616, 665, 839
AflIII ACRYGT 1 cut(s) 559
AgsI TTSAA 2 cut(s) 176, 614
AhlI ACTAGT 1 cut(s) 430
AjnI CCWGG 1 cut(s) 418
Alw26I GTCTC 1 cut(s) 58
AlwI GGATC 1 cut(s) 264
ApeKI GCWGC 3 cut(s) 92, 439, 638
ApoI RAATTY 1 cut(s) 713
AseI ATTAAT 1 cut(s) 315
AspLEI GCGC 1 cut(s) 480
AsuHPI GGTGA 4 cut(s) 67, 212, 434, 470
AsuNHI GCTAGC 1 cut(s) 910
BaeI ACNNNNGTAYC 2 cut(s) 914, 947
BauI CACGAG 2 cut(s) 528, 791
BbsI GAAGAC 1 cut(s) 91
BbvI GCAGC 3 cut(s) 79, 451, 625
BccI CCATC 1 cut(s) 667
BceAI ACGGC 1 cut(s) 155
BcgI CGANNNNNNTGC 2 cut(s) 560, 594
BciT130I CCWGG 1 cut(s) 420
BcoDI GTCTC 1 cut(s) 58
BcuI ACTAGT 1 cut(s) 430
BfaI CTAG 4 cut(s) 327, 431, 536, 911
BfuAI ACCTGC 1 cut(s) 461
BglII AGATCT 3 cut(s) 259, 346, 978
BisI GCNGC 3 cut(s) 93, 440, 639
BlsI GCNGC 3 cut(s) 94, 441, 640
Bme1390I CCNGG 1 cut(s) 420
BmrFI CCNGG 1 cut(s) 420
BmsI GCATC 2 cut(s) 24, 451
BmtI GCTAGC 1 cut(s) 914
BpiI GAAGAC 1 cut(s) 91
BpuEI CTTGAG 1 cut(s) 947
BsaHI GRCGYC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 464
Bsc4I CCNNNNNNNGG 5 cut(s) 419, 470, 616, 665, 839
Bse1I ACTGG 2 cut(s) 510, 805
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 464
BseGI GGATG 3 cut(s) 244, 506, 551
BseLI CCNNNNNNNGG 5 cut(s) 419, 470, 616, 665, 839
BseMII CTCAG 1 cut(s) 917
BseNI ACTGG 2 cut(s) 510, 805
BseRI GAGGAG 3 cut(s) 4, 98, 115
BseXI GCAGC 3 cut(s) 79, 451, 625
BsgI GTGCAG 1 cut(s) 783
Bsh1236I CGCG 2 cut(s) 480, 561
Bsh1285I CGRYCG 1 cut(s) 165
BsiEI CGRYCG 1 cut(s) 165
BsiSI CCGG 1 cut(s) 29
BslFI GGGAC 1 cut(s) 576
BslI CCNNNNNNNGG 5 cut(s) 419, 470, 616, 665, 839
BsmAI GTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 576
Bsp143I GATC 6 cut(s) 259, 269, 331, 346, 745, 978
BspACI CCGC 1 cut(s) 195
BspCNI CTCAG 1 cut(s) 916
BspFNI CGCG 2 cut(s) 480, 561
BspMI ACCTGC 1 cut(s) 461
BspOI GCTAGC 1 cut(s) 914
BspPI GGATC 1 cut(s) 264
BspQI GCTCTTC 1 cut(s) 414
BsrI ACTGG 2 cut(s) 510, 805
BssECI CCNNGG 1 cut(s) 464
BssMI GATC 6 cut(s) 259, 269, 331, 346, 745, 978
BssNI GRCGYC 1 cut(s) 168
BssSI CACGAG 2 cut(s) 528, 791
BssT1I CCWWGG 1 cut(s) 464
Bst2BI CACGAG 2 cut(s) 528, 791
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 5 cut(s) 79, 278, 357, 882, 999
Bst6I CTCTTC 3 cut(s) 22, 118, 414
BstACI GRCGYC 1 cut(s) 168
BstC8I GCNNGC 2 cut(s) 912, 959
BstDEI CTNAG 3 cut(s) 496, 587, 903
BstENI CCTNNNNNAGG 2 cut(s) 468, 614
BstF5I GGATG 3 cut(s) 244, 506, 551
BstFNI CGCG 2 cut(s) 480, 561
BstHHI GCGC 1 cut(s) 480
BstKTI GATC 6 cut(s) 262, 272, 334, 349, 748, 981
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 6 cut(s) 259, 269, 331, 346, 745, 978
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 2 cut(s) 176, 558
BstNI CCWGG 1 cut(s) 420
BstNSI RCATGY 1 cut(s) 781
BstSCI CCNGG 1 cut(s) 418
BstUI CGCG 2 cut(s) 480, 561
BstV1I GCAGC 3 cut(s) 79, 451, 625
BstV2I GAAGAC 1 cut(s) 91
BstX2I RGATCY 4 cut(s) 259, 269, 346, 978
BstYI RGATCY 4 cut(s) 259, 269, 346, 978
BtgZI GCGATG 3 cut(s) 47, 495, 717
BtsCI GGATG 3 cut(s) 244, 506, 551
BtsI GCAGTG 1 cut(s) 604
BtsIMutI CAGTG 1 cut(s) 604
BveI ACCTGC 1 cut(s) 461
Cac8I GCNNGC 2 cut(s) 912, 959
CfoI GCGC 1 cut(s) 480
CseI GACGC 2 cut(s) 176, 241
Csp6I GTAC 3 cut(s) 65, 358, 649
CviAII CATG 4 cut(s) 58, 414, 778, 950
CviQI GTAC 3 cut(s) 65, 358, 649
DdeI CTNAG 3 cut(s) 496, 587, 903
DpnI GATC 6 cut(s) 261, 271, 333, 348, 747, 980
DpnII GATC 6 cut(s) 259, 269, 331, 346, 745, 978
DraI TTTAAA 1 cut(s) 1003
Eam1104I CTCTTC 3 cut(s) 22, 118, 414
EarI CTCTTC 3 cut(s) 22, 118, 414
Eco130I CCWWGG 1 cut(s) 464
Eco32I GATATC 1 cut(s) 225
Eco57I CTGAAG 1 cut(s) 162
EcoNI CCTNNNNNAGG 2 cut(s) 468, 614
EcoRI GAATTC 1 cut(s) 713
EcoRII CCWGG 1 cut(s) 418
EcoRV GATATC 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 464
ErhI CCWWGG 1 cut(s) 464
FaeI CATG 4 cut(s) 61, 417, 781, 953
FaqI GGGAC 1 cut(s) 576
FatI CATG 4 cut(s) 57, 413, 777, 949
FauNDI CATATG 1 cut(s) 285
FblI GTMKAC 1 cut(s) 819
Fnu4HI GCNGC 3 cut(s) 93, 440, 639
FokI GGATG 3 cut(s) 251, 493, 558
Fsp4HI GCNGC 3 cut(s) 93, 440, 639
FspBI CTAG 4 cut(s) 327, 431, 536, 911
GlaI GCGC 1 cut(s) 479
GluI GCNGC 3 cut(s) 93, 440, 639
HapII CCGG 1 cut(s) 29
HgaI GACGC 2 cut(s) 176, 241
HhaI GCGC 1 cut(s) 480
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 4 cut(s) 61, 417, 781, 953
Hin6I GCGC 1 cut(s) 478
HinP1I GCGC 1 cut(s) 478
HindIII AAGCTT 2 cut(s) 144, 177
HinfI GANTC 4 cut(s) 45, 503, 804, 846
HpaII CCGG 1 cut(s) 29
HphI GGTGA 4 cut(s) 67, 212, 434, 470
Hpy166II GTNNAC 4 cut(s) 461, 798, 820, 878
Hpy188I TCNGA 7 cut(s) 231, 264, 351, 698, 733, 750, 906
Hpy188III TCNNGA 2 cut(s) 140, 536
Hpy8I GTNNAC 4 cut(s) 461, 798, 820, 878
Hpy99I CGWCG 3 cut(s) 170, 235, 842
HpyAV CCTTC 1 cut(s) 374
HpyCH4III ACNGT 5 cut(s) 79, 278, 357, 882, 999
HpyCH4IV ACGT 2 cut(s) 554, 864
HpyCH4V TGCA 6 cut(s) 37, 283, 289, 344, 571, 764
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 558
HpyF3I CTNAG 3 cut(s) 496, 587, 903
HpySE526I ACGT 2 cut(s) 554, 864
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 4 cut(s) 61, 417, 781, 953
HspAI GCGC 1 cut(s) 478
Kzo9I GATC 6 cut(s) 259, 269, 331, 346, 745, 978
LguI GCTCTTC 1 cut(s) 414
LmnI GCTCC 1 cut(s) 137
Lsp1109I GCAGC 3 cut(s) 79, 451, 625
LweI GCATC 2 cut(s) 24, 451
MaeI CTAG 4 cut(s) 327, 431, 536, 911
MaeII ACGT 2 cut(s) 554, 864
MaeIII GTNAC 3 cut(s) 426, 555, 855
MalI GATC 6 cut(s) 261, 271, 333, 348, 747, 980
MboI GATC 6 cut(s) 259, 269, 331, 346, 745, 978
MflI RGATCY 4 cut(s) 259, 269, 346, 978
MluCI AATT 2 cut(s) 540, 713
MluI ACGCGT 1 cut(s) 559
MlyI GAGTC 1 cut(s) 798
MmeI TCCRAC 2 cut(s) 254, 297
MseI TTAA 5 cut(s) 315, 516, 827, 966, 1002
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 420
MvaI CCWGG 1 cut(s) 420
MvnI CGCG 2 cut(s) 480, 561
MwoI GCNNNNNNNGC 2 cut(s) 176, 558
NdeI CATATG 1 cut(s) 285
NdeII GATC 6 cut(s) 259, 269, 331, 346, 745, 978
NheI GCTAGC 1 cut(s) 910
NlaIII CATG 4 cut(s) 61, 417, 781, 953
NmuCI GTSAC 1 cut(s) 855
NspI RCATGY 1 cut(s) 781
PaqCI CACCTGC 1 cut(s) 461
PciSI GCTCTTC 1 cut(s) 414
PfeI GAWTC 3 cut(s) 45, 503, 846
PflMI CCANNNNNTGG 1 cut(s) 419
PkrI GCNGC 3 cut(s) 94, 441, 640
PleI GAGTC 1 cut(s) 798
PpsI GAGTC 1 cut(s) 798
PshBI ATTAAT 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 418
PspGI CCWGG 1 cut(s) 418
PsuI RGATCY 4 cut(s) 259, 269, 346, 978
RsaI GTAC 3 cut(s) 66, 359, 650
RsaNI GTAC 3 cut(s) 65, 358, 649
SapI GCTCTTC 1 cut(s) 414
SaqAI TTAA 5 cut(s) 315, 516, 827, 966, 1002
SatI GCNGC 3 cut(s) 93, 440, 639
Sau3AI GATC 6 cut(s) 259, 269, 331, 346, 745, 978
SchI GAGTC 1 cut(s) 798
ScrFI CCNGG 1 cut(s) 420
SfaNI GCATC 2 cut(s) 24, 451
SmlI CTYRAG 1 cut(s) 926
SmoI CTYRAG 1 cut(s) 926
SpeI ACTAGT 1 cut(s) 430
Sse9I AATT 2 cut(s) 540, 713
SsiI CCGC 1 cut(s) 195
SspMI CTAG 4 cut(s) 327, 431, 536, 911
StyD4I CCNGG 1 cut(s) 418
StyI CCWWGG 1 cut(s) 464
TaaI ACNGT 5 cut(s) 79, 278, 357, 882, 999
TaiI ACGT 2 cut(s) 557, 867
TaqI TCGA 2 cut(s) 489, 807
TaqII GACCGA 1 cut(s) 179
TasI AATT 2 cut(s) 540, 713
TatI WGTACW 2 cut(s) 64, 357
TfiI GAWTC 3 cut(s) 45, 503, 846
Tru1I TTAA 5 cut(s) 315, 516, 827, 966, 1002
Tru9I TTAA 5 cut(s) 315, 516, 827, 966, 1002
TscAI CASTG 1 cut(s) 611
TseFI GTSAC 1 cut(s) 855
TseI GCWGC 3 cut(s) 92, 439, 638
Tsp45I GTSAC 1 cut(s) 855
TspDTI ATGAA 2 cut(s) 402, 565
TspRI CASTG 1 cut(s) 611
Van91I CCANNNNNTGG 1 cut(s) 419
VspI ATTAAT 1 cut(s) 315
XagI CCTNNNNNAGG 2 cut(s) 468, 614
XapI RAATTY 1 cut(s) 713
XbaI TCTAGA 1 cut(s) 535
XceI RCATGY 1 cut(s) 781
XmiI GTMKAC 1 cut(s) 819
XspI CTAG 4 cut(s) 327, 431, 536, 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.