FvH4_6g03940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013395
Physical Location & Seq
Reverse (-)
2123798 .. 2126066
2269 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03940.t1

Sequence Viewer

Length: 1005 bp
ATGGCTCTCTCACCGTCCAAGGGCATAGTTGTAACTATCCCCGTGCTGGTCCTCACGGCCTCGCTCGCCGCCGTGTTCTTCTTCCTCCTCCTGTCGTCGTTCTCGTCCTGCACCTGCGGCGGTGGCCGCGTCGCCGTCGCCGGAGTTCCGAGTGCTCCGGTGAGCGGCGGAGGAGATGCGGCGACGGAGAGGGAGCGGGAGAGCGGCGGCGAGACGATACGGTCGTCGGAGGAGGATGTGGAGTGGGTGAAGGATCAGATCCGAGTGAATGGGCTGCATATGCAGGATAACGTGTTGCGTAAGGGAATTAACCCTAGGACTAGGGCTCAGCAGCTCCAGGATCTCTTGCAGTACAAGGGTATATCTCACTATGAAGGACCAGAGTCTGGTAATCACACTGCCCTCCCATGCCCTGGTGAGCTCCTTACTGAGGAGCATCACAGTAACTATGGTGAGCCTTGGGCAGGTGGGCGAGATGTTTTTGAGTTCCTTGCTCAATCAAGTCATCTGAAGCCTGATTCAAAGGTACTTGAGATTGGCTGTGGTACTCTCCGAGTTGGTTTGCATTTCATCCGCTATCTTCGTCCTGGACACTTCCACTGTCTCGAAAGAGACGAGCTCTCATTAATGGCTGCCTTTAGATATGAGCTTCCTTCTCAAGGTCTTCTGCATAAGCGCCCTTTAATTGTGAAAGGTGACAACATGGACTTCTCTAGATTTGGTTCACATGTTGTGTATGACTTGATCTATGCTAGTGCTGTGTTTCTTCATATGCCTGGTGATCTTGTGTGGACTGGGTTGGAGAGATTGACAACTAAATTGAAACCTTTTGATGGGCGTATCTTTGTGTCTCATAATATCAAGTTCTGCTCACGATTGGGAAGAGAAGAGTGTACAAAACGGCTTACGAGGCTGGGCCTGGAGTATGTCGGAAAACATACACACGACAGCTTGCTGTTTAATCATTATGAGATCTGGTTCGAGTTTAAGCGGACAAGGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_23

Protein Analysis

335

Amino Acids

37.36

Weight (kDa)

7.27

Isoelectric Point (pI)

46.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_12 PF08242 177 - 280 1.8e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013395)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05100
fragaria_vesca FvH4_6g03940
malus_domestica MD04G1217100.v1.1 MD12G1234100.v1.1
prunus_persica Prupe.6G337200_v2.0.a1 Prupe.6G337200_v2.0.a1
pyrus_communis pycom04g19320 pycom12g21650 pycom16g23200
rosa_chinensis RchiOBHm_Chr3g0452511
rosa_laevigata RLG00000025596
rosa_roxburghii Rroxscaffold_6G00429540
rosa_rugosa Rorug02G0641200
rosa_samantha Rh3AG043200 Rh3BG044900 Rh3CG043500 Rh3DG044300
rosa_wichuraiana Rw3G003350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 122, 455
AasI GACNNNNNNGTC 1 cut(s) 220
Acc36I ACCTGC 2 cut(s) 122, 455
AccB7I CCANNNNNTGG 2 cut(s) 386, 413
AccBSI CCGCTC 3 cut(s) 165, 196, 204
AccII CGCG 1 cut(s) 129
AclWI GGATC 3 cut(s) 253, 261, 348
AcoI YGGCCR 1 cut(s) 124
AcuI CTGAAG 1 cut(s) 530
AfaI GTAC 4 cut(s) 353, 528, 547, 895
AfiI CCNNNNNNNGG 9 cut(s) 20, 46, 164, 386, 413, 430, 464, 659, 833
AflIII ACRYGT 2 cut(s) 291, 727
AgsI TTSAA 2 cut(s) 522, 823
AjnI CCWGG 5 cut(s) 336, 412, 586, 775, 918
AluBI AGCT 5 cut(s) 334, 421, 619, 649, 951
AluI AGCT 5 cut(s) 334, 421, 619, 649, 951
Alw21I GWGCWC 3 cut(s) 157, 423, 621
Alw26I GTCTC 4 cut(s) 206, 606, 608, 855
AlwI GGATC 3 cut(s) 253, 261, 348
AlwNI CAGNNNCTG 1 cut(s) 386
AoxI GGCC 3 cut(s) 57, 124, 916
ApeKI GCWGC 3 cut(s) 274, 331, 632
AseI ATTAAT 1 cut(s) 626
AspA2I CCTAGG 1 cut(s) 314
AspLEI GCGC 1 cut(s) 678
AspS9I GGNCC 3 cut(s) 49, 377, 916
AsuHPI GGTGA 7 cut(s) 3, 172, 259, 428, 464, 707, 791
AvaII GGWCC 2 cut(s) 49, 377
AvrII CCTAGG 1 cut(s) 314
BaeI ACNNNNGTAYC 2 cut(s) 209, 242
BanII GRGCYC 3 cut(s) 328, 423, 621
BbsI GAAGAC 1 cut(s) 656
Bbv12I GWGCWC 3 cut(s) 157, 423, 621
BbvI GCAGC 3 cut(s) 261, 343, 619
BccI CCATC 1 cut(s) 827
BceAI ACGGC 4 cut(s) 56, 72, 119, 917
BciT130I CCWGG 5 cut(s) 338, 414, 588, 777, 920
BcoDI GTCTC 4 cut(s) 206, 606, 608, 855
BfaI CTAG 4 cut(s) 315, 321, 714, 753
BfoI RGCGCY 1 cut(s) 679
BfuAI ACCTGC 2 cut(s) 122, 455
BglII AGATCT 1 cut(s) 972
BlnI CCTAGG 1 cut(s) 314
BlpI GCTNAGC 1 cut(s) 327
Bme1390I CCNGG 5 cut(s) 338, 414, 588, 777, 920
Bme18I GGWCC 2 cut(s) 49, 377
BmgT120I GGNCC 3 cut(s) 49, 377, 916
BmrFI CCNGG 5 cut(s) 338, 414, 588, 777, 920
BmrI ACTGGG 1 cut(s) 804
BmsI GCATC 2 cut(s) 166, 445
BmuI ACTGGG 1 cut(s) 804
BoxI GACNNNNGTC 1 cut(s) 382
BpiI GAAGAC 1 cut(s) 656
BplI GAGNNNNNCTC 2 cut(s) 603, 635
BpmI CTGGAG 2 cut(s) 320, 941
Bpu1102I GCTNAGC 1 cut(s) 327
BpuEI CTTGAG 2 cut(s) 551, 642
BsaJI CCNNGG 4 cut(s) 18, 314, 412, 458
BsaWI WCCGGW 1 cut(s) 157
Bsc4I CCNNNNNNNGG 9 cut(s) 20, 46, 164, 386, 413, 430, 464, 659, 833
Bse1I ACTGG 1 cut(s) 799
BseBI CCWGG 5 cut(s) 338, 414, 588, 777, 920
BseDI CCNNGG 4 cut(s) 18, 314, 412, 458
BseGI GGATG 2 cut(s) 241, 570
BseLI CCNNNNNNNGG 9 cut(s) 20, 46, 164, 386, 413, 430, 464, 659, 833
BseMII CTCAG 2 cut(s) 341, 420
BseNI ACTGG 1 cut(s) 799
BseRI GAGGAG 4 cut(s) 77, 186, 245, 446
BseXI GCAGC 3 cut(s) 261, 343, 619
BseYI CCCAGC 1 cut(s) 913
BsgI GTGCAG 1 cut(s) 94
Bsh1236I CGCG 1 cut(s) 129
Bsh1285I CGRYCG 1 cut(s) 224
BshFI GGCC 3 cut(s) 59, 126, 918
BsiEI CGRYCG 1 cut(s) 224
BsiHKAI GWGCWC 3 cut(s) 157, 423, 621
BsiSI CCGG 2 cut(s) 141, 158
BslI CCNNNNNNNGG 9 cut(s) 20, 46, 164, 386, 413, 430, 464, 659, 833
BsmAI GTCTC 4 cut(s) 206, 606, 608, 855
BsmBI CGTCTC 2 cut(s) 206, 606
BsnI GGCC 3 cut(s) 59, 126, 918
Bsp1286I GDGCHC 4 cut(s) 157, 328, 423, 621
Bsp1407I TGTACA 1 cut(s) 893
Bsp143I GATC 6 cut(s) 253, 258, 340, 744, 781, 972
Bsp1720I GCTNAGC 1 cut(s) 327
BspANI GGCC 3 cut(s) 59, 126, 918
BspCNI CTCAG 2 cut(s) 340, 421
BspFNI CGCG 1 cut(s) 129
BspMI ACCTGC 2 cut(s) 122, 455
BspPI GGATC 3 cut(s) 253, 261, 348
BsrBI CCGCTC 3 cut(s) 165, 196, 204
BsrGI TGTACA 1 cut(s) 893
BsrI ACTGG 1 cut(s) 799
BssECI CCNNGG 4 cut(s) 18, 314, 412, 458
BssMI GATC 6 cut(s) 253, 258, 340, 744, 781, 972
BssT1I CCWWGG 3 cut(s) 18, 314, 458
Bst2UI CCWGG 5 cut(s) 338, 414, 588, 777, 920
Bst4CI ACNGT 4 cut(s) 15, 222, 443, 602
Bst6I CTCTTC 2 cut(s) 877, 882
BstAUI TGTACA 1 cut(s) 893
BstC8I GCNNGC 2 cut(s) 66, 953
BstDEI CTNAG 3 cut(s) 327, 429, 1002
BstENI CCTNNNNNAGG 3 cut(s) 428, 462, 657
BstF5I GGATG 2 cut(s) 241, 570
BstFNI CGCG 1 cut(s) 129
BstH2I RGCGCY 1 cut(s) 679
BstHHI GCGC 1 cut(s) 678
BstKTI GATC 6 cut(s) 256, 261, 343, 747, 784, 975
BstMAI GTCTC 4 cut(s) 206, 606, 608, 855
BstMBI GATC 6 cut(s) 253, 258, 340, 744, 781, 972
BstMCI CGRYCG 1 cut(s) 224
BstMWI GCNNNNNNNGC 6 cut(s) 65, 117, 123, 126, 280, 910
BstNI CCWGG 5 cut(s) 338, 414, 588, 777, 920
BstNSI RCATGY 1 cut(s) 731
BstPAI GACNNNNGTC 1 cut(s) 382
BstSCI CCNGG 5 cut(s) 336, 412, 586, 775, 918
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 3 cut(s) 261, 343, 619
BstV2I GAAGAC 1 cut(s) 656
BstX2I RGATCY 3 cut(s) 258, 340, 972
BstYI RGATCY 3 cut(s) 258, 340, 972
BsuRI GGCC 3 cut(s) 59, 126, 918
BtsCI GGATG 2 cut(s) 241, 570
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 2 cut(s) 396, 598
BveI ACCTGC 2 cut(s) 122, 455
Cac8I GCNNGC 2 cut(s) 66, 953
CaiI CAGNNNCTG 1 cut(s) 386
CfoI GCGC 1 cut(s) 678
Cfr13I GGNCC 3 cut(s) 49, 377, 916
CseI GACGC 1 cut(s) 118
Csp6I GTAC 4 cut(s) 352, 527, 546, 894
CviAII CATG 3 cut(s) 408, 703, 728
CviQI GTAC 4 cut(s) 352, 527, 546, 894
DdeI CTNAG 3 cut(s) 327, 429, 1002
DpnI GATC 6 cut(s) 255, 260, 342, 746, 783, 974
DpnII GATC 6 cut(s) 253, 258, 340, 744, 781, 972
DrdI GACNNNNNNGTC 1 cut(s) 220
DseDI GACNNNNNNGTC 1 cut(s) 220
EaeI YGGCCR 1 cut(s) 124
Eam1104I CTCTTC 2 cut(s) 877, 882
EarI CTCTTC 2 cut(s) 877, 882
EciI GGCGGA 1 cut(s) 183
Ecl136II GAGCTC 2 cut(s) 421, 619
Eco130I CCWWGG 3 cut(s) 18, 314, 458
Eco24I GRGCYC 3 cut(s) 328, 423, 621
Eco47I GGWCC 2 cut(s) 49, 377
Eco53kI GAGCTC 2 cut(s) 421, 619
Eco57I CTGAAG 1 cut(s) 530
EcoICRI GAGCTC 2 cut(s) 421, 619
EcoNI CCTNNNNNAGG 3 cut(s) 428, 462, 657
EcoRII CCWGG 5 cut(s) 336, 412, 586, 775, 918
EcoT14I CCWWGG 3 cut(s) 18, 314, 458
EcoT38I GRGCYC 3 cut(s) 328, 423, 621
ErhI CCWWGG 3 cut(s) 18, 314, 458
Esp3I CGTCTC 2 cut(s) 206, 606
FaeI CATG 3 cut(s) 411, 706, 731
FatI CATG 3 cut(s) 407, 702, 727
FauI CCCGC 1 cut(s) 189
FauNDI CATATG 2 cut(s) 279, 771
FokI GGATG 2 cut(s) 248, 557
FriOI GRGCYC 3 cut(s) 328, 423, 621
FspBI CTAG 4 cut(s) 315, 321, 714, 753
GlaI GCGC 1 cut(s) 677
GsaI CCCAGC 1 cut(s) 917
GsuI CTGGAG 2 cut(s) 320, 941
HaeII RGCGCY 1 cut(s) 679
HaeIII GGCC 3 cut(s) 59, 126, 918
HapII CCGG 2 cut(s) 141, 158
HgaI GACGC 1 cut(s) 118
HhaI GCGC 1 cut(s) 678
Hin1II CATG 3 cut(s) 411, 706, 731
Hin6I GCGC 1 cut(s) 676
HinP1I GCGC 1 cut(s) 676
HinfI GANTC 2 cut(s) 383, 518
HpaII CCGG 2 cut(s) 141, 158
HphI GGTGA 7 cut(s) 3, 172, 259, 428, 464, 707, 791
Hpy166II GTNNAC 3 cut(s) 725, 792, 894
Hpy188I TCNGA 7 cut(s) 150, 229, 258, 263, 510, 554, 932
Hpy188III TCNNGA 3 cut(s) 605, 714, 873
Hpy8I GTNNAC 3 cut(s) 725, 792, 894
Hpy99I CGWCG 5 cut(s) 100, 134, 140, 187, 229
HpyAV CCTTC 3 cut(s) 244, 368, 663
HpyCH4III ACNGT 4 cut(s) 15, 222, 443, 602
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 6 cut(s) 111, 277, 283, 349, 565, 670
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 117, 123, 126, 280, 910
HpyF3I CTNAG 3 cut(s) 327, 429, 1002
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 3 cut(s) 411, 706, 731
HspAI GCGC 1 cut(s) 676
Kzo9I GATC 6 cut(s) 253, 258, 340, 744, 781, 972
LmnI GCTCC 5 cut(s) 160, 193, 339, 426, 433
Lsp1109I GCAGC 3 cut(s) 261, 343, 619
LweI GCATC 2 cut(s) 166, 445
MaeI CTAG 4 cut(s) 315, 321, 714, 753
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 3 cut(s) 31, 443, 695
MalI GATC 6 cut(s) 255, 260, 342, 746, 783, 974
MbiI CCGCTC 3 cut(s) 165, 196, 204
MboI GATC 6 cut(s) 253, 258, 340, 744, 781, 972
MboII GAAGA 7 cut(s) 70, 73, 572, 656, 758, 894, 899
MflI RGATCY 3 cut(s) 258, 340, 972
MhlI GDGCHC 4 cut(s) 157, 328, 423, 621
MluCI AATT 3 cut(s) 306, 684, 818
MlyI GAGTC 1 cut(s) 392
MmeI TCCRAC 3 cut(s) 207, 780, 910
MseI TTAA 5 cut(s) 309, 626, 683, 960, 987
MspI CCGG 2 cut(s) 141, 158
MspR9I CCNGG 5 cut(s) 338, 414, 588, 777, 920
MvaI CCWGG 5 cut(s) 338, 414, 588, 777, 920
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 6 cut(s) 65, 117, 123, 126, 280, 910
NdeI CATATG 2 cut(s) 279, 771
NdeII GATC 6 cut(s) 253, 258, 340, 744, 781, 972
NlaIII CATG 3 cut(s) 411, 706, 731
NmuCI GTSAC 1 cut(s) 695
NspI RCATGY 1 cut(s) 731
PaqCI CACCTGC 2 cut(s) 122, 455
PciI ACATGT 1 cut(s) 727
PcsI WCGNNNNNNNCGW 3 cut(s) 101, 221, 612
PfeI GAWTC 1 cut(s) 518
PflMI CCANNNNNTGG 2 cut(s) 386, 413
PfoI TCCNGGA 2 cut(s) 336, 586
PleI GAGTC 1 cut(s) 391
PpsI GAGTC 1 cut(s) 391
PscI ACATGT 1 cut(s) 727
PshAI GACNNNNGTC 1 cut(s) 382
PshBI ATTAAT 1 cut(s) 626
Psp124BI GAGCTC 2 cut(s) 423, 621
Psp6I CCWGG 5 cut(s) 336, 412, 586, 775, 918
PspFI CCCAGC 1 cut(s) 913
PspGI CCWGG 5 cut(s) 336, 412, 586, 775, 918
PspPI GGNCC 3 cut(s) 49, 377, 916
PstNI CAGNNNCTG 1 cut(s) 386
PsuI RGATCY 3 cut(s) 258, 340, 972
RsaI GTAC 4 cut(s) 353, 528, 547, 895
RsaNI GTAC 4 cut(s) 352, 527, 546, 894
SacI GAGCTC 2 cut(s) 423, 621
SaqAI TTAA 5 cut(s) 309, 626, 683, 960, 987
Sau3AI GATC 6 cut(s) 253, 258, 340, 744, 781, 972
Sau96I GGNCC 3 cut(s) 49, 377, 916
SchI GAGTC 1 cut(s) 392
ScrFI CCNGG 5 cut(s) 338, 414, 588, 777, 920
SduI GDGCHC 4 cut(s) 157, 328, 423, 621
SfaNI GCATC 2 cut(s) 166, 445
SinI GGWCC 2 cut(s) 49, 377
SmlI CTYRAG 2 cut(s) 530, 657
SmoI CTYRAG 2 cut(s) 530, 657
Sse9I AATT 3 cut(s) 306, 684, 818
SspMI CTAG 4 cut(s) 315, 321, 714, 753
SstI GAGCTC 2 cut(s) 423, 621
StyD4I CCNGG 5 cut(s) 336, 412, 586, 775, 918
StyI CCWWGG 3 cut(s) 18, 314, 458
TaaI ACNGT 4 cut(s) 15, 222, 443, 602
TaiI ACGT 1 cut(s) 294
TaqI TCGA 2 cut(s) 606, 981
TasI AATT 3 cut(s) 306, 684, 818
TatI WGTACW 2 cut(s) 351, 893
TauI GCSGC 7 cut(s) 71, 120, 129, 168, 182, 207, 210
TfiI GAWTC 1 cut(s) 518
Tru1I TTAA 5 cut(s) 309, 626, 683, 960, 987
Tru9I TTAA 5 cut(s) 309, 626, 683, 960, 987
TscAI CASTG 2 cut(s) 403, 605
TseFI GTSAC 1 cut(s) 695
TseI GCWGC 3 cut(s) 274, 331, 632
Tsp45I GTSAC 1 cut(s) 695
TspDTI ATGAA 3 cut(s) 387, 559, 758
TspGWI ACGGA 1 cut(s) 200
TspRI CASTG 2 cut(s) 403, 605
Van91I CCANNNNNTGG 2 cut(s) 386, 413
VpaK11BI GGWCC 2 cut(s) 49, 377
VspI ATTAAT 1 cut(s) 626
XagI CCTNNNNNAGG 3 cut(s) 428, 462, 657
XbaI TCTAGA 1 cut(s) 713
XceI RCATGY 1 cut(s) 731
XmaJI CCTAGG 1 cut(s) 314
XspI CTAG 4 cut(s) 315, 321, 714, 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.