Rh3AG043200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0013395
Physical Location & Seq
Forward (+)
2902958 .. 2905834
2877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG043200.1

Sequence Viewer

Length: 1020 bp
ATGGCTCTCTCCTCGGCTTCGTCGTCACCGTCCAAGGGCATAGTGGTAACTGTCCCGGTACTGGTCCTCTCGGCCTCGGTCGCCGCCGTCTTCTTCTTCTTCCTCCTCTCCTCTCTCTCGTCCTGCTCCTGCGGCGGCGGCGGCGGCCGTATCGCCGTCGCCGGCGTTCCGAGTCAGTCCGGCGGAGGAGATGTGGCTGCGGCGACCGGAAGGTGGGAGAGCGGCGAGACGATACGGTCGTCAAAGGAGGATGTGGAGTGGGTGAAGGATCAGATCCGAGTGAATGGGCTGCATATGCAGGATAACGTGTTGCGTAAGGGAATCAACCCTAGGACTCGGGCTCAGCAGCTCCAGGATCTCTTGCAGTACAAGGGTATATCTCACTATGAAGGACCTGACTCTGGAAATCACACTGCCCTCCCATGCCCTGGTGAGCTCCTTACTGAAGAACACCACAGTAACTATGGTGAGCCTTGGGCAGGCGGGCGAGATGTTTTTGAGTTCCTTGCTCAGTCCAGCCATCTTAAGCCTGATTCAAAGGTTCTTGAGATTGGCTGTGGTACCCTCCGAGTTGGTTTGCACTTCATTCGTTATCTTCATCCCGGACACTTCCACTGTCTCGAAAGAGATGAGCTCTCACTAATGGCTGCCTTTAGATATGAGCTTCCTTCCCAAGGTCTTCTTCATAAGCGCCCTTTAATTGTGAAAGGTGACAACATGGACTTCAGCAGATTTGGTTCTGACGTTGTGTATGATTTGATCTATGCTAGTGCTGTGTTTCTTCATATGCCTGGTGATCTTGTGTGGCTTGGGTTAGAGAGATTGACAAAGAAATTGAAACCTTATGATGGGCGGATCTTTGTGTCCCATAATATCAAGTTCTGCTCACGGTTGGGAGGGGAAGAGTGTACAAAACGGCTTACGAAGCTGGGCCTGGAGTATGTCGGAAAACATACACATGACAGCTTGCTTTTTAATCATTATGAGATCTGGTTTGAGTTTAAGCGGACAAAGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_23

Protein Analysis

339

Amino Acids

37.5

Weight (kDa)

7.7

Isoelectric Point (pI)

47.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_12 PF08242 182 - 285 9.9e-07 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013395)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05100
fragaria_vesca FvH4_6g03940
malus_domestica MD04G1217100.v1.1 MD12G1234100.v1.1
prunus_persica Prupe.6G337200_v2.0.a1 Prupe.6G337200_v2.0.a1
pyrus_communis pycom04g19320 pycom12g21650 pycom16g23200
rosa_chinensis RchiOBHm_Chr3g0452511
rosa_laevigata RLG00000025596
rosa_roxburghii Rroxscaffold_6G00429540
rosa_rugosa Rorug02G0641200
rosa_samantha Rh3AG043200 Rh3BG044900 Rh3CG043500 Rh3DG044300
rosa_wichuraiana Rw3G003350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 235
Acc65I GGTACC 1 cut(s) 560
AccB1I GGYRCC 1 cut(s) 560
AccB7I CCANNNNNTGG 1 cut(s) 428
AccBSI CCGCTC 1 cut(s) 222
AclWI GGATC 4 cut(s) 268, 276, 363, 863
AcoI YGGCCR 1 cut(s) 145
AcuI CTGAAG 2 cut(s) 465, 709
AfaI GTAC 4 cut(s) 60, 368, 562, 910
AfiI CCNNNNNNNGG 8 cut(s) 35, 61, 213, 401, 428, 479, 674, 848
AflII CTTAAG 1 cut(s) 524
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 2 cut(s) 537, 838
AjnI CCWGG 4 cut(s) 351, 427, 790, 933
AjuI GAANNNNNNNTTGG 2 cut(s) 666, 698
AluBI AGCT 6 cut(s) 349, 436, 634, 664, 928, 966
AluI AGCT 6 cut(s) 349, 436, 634, 664, 928, 966
Alw21I GWGCWC 2 cut(s) 438, 636
Alw26I GTCTC 2 cut(s) 221, 623
AlwI GGATC 4 cut(s) 268, 276, 363, 863
Ama87I CYCGRG 1 cut(s) 336
AoxI GGCC 4 cut(s) 72, 145, 931, 1014
ApeKI GCWGC 4 cut(s) 197, 289, 346, 647
Asp718I GGTACC 1 cut(s) 560
AspA2I CCTAGG 1 cut(s) 329
AspLEI GCGC 1 cut(s) 693
AspS9I GGNCC 3 cut(s) 64, 392, 931
AsuC2I CCSGG 2 cut(s) 56, 603
AsuHPI GGTGA 6 cut(s) 18, 274, 443, 479, 722, 806
AvaI CYCGRG 1 cut(s) 336
AvaII GGWCC 2 cut(s) 64, 392
AvrII CCTAGG 1 cut(s) 329
BaeI ACNNNNGTAYC 2 cut(s) 224, 257
BanI GGYRCC 1 cut(s) 560
BanII GRGCYC 3 cut(s) 343, 438, 636
BbsI GAAGAC 2 cut(s) 82, 671
Bbv12I GWGCWC 2 cut(s) 438, 636
BbvI GCAGC 4 cut(s) 184, 276, 358, 634
BccI CCATC 2 cut(s) 528, 842
BceAI ACGGC 4 cut(s) 71, 132, 140, 932
BcgI CGANNNNNNTGC 2 cut(s) 569, 603
BciT130I CCWGG 4 cut(s) 353, 429, 792, 935
BcnI CCSGG 2 cut(s) 56, 603
BcoDI GTCTC 2 cut(s) 221, 623
BfaI CTAG 3 cut(s) 330, 768, 1018
BfoI RGCGCY 1 cut(s) 694
BfrI CTTAAG 1 cut(s) 524
BglII AGATCT 1 cut(s) 987
BlnI CCTAGG 1 cut(s) 329
BlpI GCTNAGC 1 cut(s) 342
Bme1390I CCNGG 6 cut(s) 56, 353, 429, 603, 792, 935
Bme18I GGWCC 2 cut(s) 64, 392
BmeT110I CYCGRG 1 cut(s) 336
BmgT120I GGNCC 3 cut(s) 64, 392, 931
BmiI GGNNCC 1 cut(s) 562
BmrFI CCNGG 6 cut(s) 56, 353, 429, 603, 792, 935
BpiI GAAGAC 2 cut(s) 82, 671
BplI GAGNNNNNCTC 2 cut(s) 618, 650
BpmI CTGGAG 2 cut(s) 335, 956
Bpu1102I GCTNAGC 1 cut(s) 342
BpuEI CTTGAG 1 cut(s) 566
BpuMI CCSGG 2 cut(s) 56, 603
BsaJI CCNNGG 7 cut(s) 12, 33, 75, 329, 427, 473, 673
BsaWI WCCGGW 1 cut(s) 206
BsaXI ACNNNNNCTCC 2 cut(s) 177, 207
Bsc4I CCNNNNNNNGG 8 cut(s) 35, 61, 213, 401, 428, 479, 674, 848
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 1 cut(s) 66
BseBI CCWGG 4 cut(s) 353, 429, 792, 935
BseDI CCNNGG 7 cut(s) 12, 33, 75, 329, 427, 473, 673
BseGI GGATG 2 cut(s) 256, 598
BseLI CCNNNNNNNGG 8 cut(s) 35, 61, 213, 401, 428, 479, 674, 848
BseMII CTCAG 2 cut(s) 356, 524
BseNI ACTGG 1 cut(s) 66
BseRI GAGGAG 3 cut(s) 95, 100, 201
BseX3I CGGCCG 1 cut(s) 145
BseXI GCAGC 4 cut(s) 184, 276, 358, 634
BseYI CCCAGC 1 cut(s) 928
Bsh1285I CGRYCG 4 cut(s) 81, 148, 207, 239
BshFI GGCC 4 cut(s) 74, 147, 933, 1016
BshNI GGYRCC 1 cut(s) 560
BsiEI CGRYCG 4 cut(s) 81, 148, 207, 239
BsiHKAI GWGCWC 2 cut(s) 438, 636
BsiHKCI CYCGRG 1 cut(s) 336
BsiSI CCGG 5 cut(s) 56, 162, 180, 207, 603
BslFI GGGAC 2 cut(s) 38, 850
BslI CCNNNNNNNGG 8 cut(s) 35, 61, 213, 401, 428, 479, 674, 848
BsmAI GTCTC 2 cut(s) 221, 623
BsmBI CGTCTC 1 cut(s) 221
BsmFI GGGAC 2 cut(s) 38, 850
BsnI GGCC 4 cut(s) 74, 147, 933, 1016
BsoBI CYCGRG 1 cut(s) 336
Bsp1286I GDGCHC 3 cut(s) 343, 438, 636
Bsp1407I TGTACA 1 cut(s) 908
Bsp143I GATC 7 cut(s) 268, 273, 355, 759, 796, 855, 987
Bsp1720I GCTNAGC 1 cut(s) 342
BspANI GGCC 4 cut(s) 74, 147, 933, 1016
BspCNI CTCAG 2 cut(s) 355, 523
BspLI GGNNCC 1 cut(s) 562
BspPI GGATC 4 cut(s) 268, 276, 363, 863
BspT107I GGYRCC 1 cut(s) 560
BspTI CTTAAG 1 cut(s) 524
BsrBI CCGCTC 1 cut(s) 222
BsrFI RCCGGY 1 cut(s) 161
BsrGI TGTACA 1 cut(s) 908
BsrI ACTGG 1 cut(s) 66
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 7 cut(s) 12, 33, 75, 329, 427, 473, 673
BssMI GATC 7 cut(s) 268, 273, 355, 759, 796, 855, 987
BssT1I CCWWGG 4 cut(s) 33, 329, 473, 673
Bst2UI CCWGG 4 cut(s) 353, 429, 792, 935
Bst4CI ACNGT 6 cut(s) 30, 52, 237, 458, 617, 891
Bst6I CTCTTC 1 cut(s) 897
BstAFI CTTAAG 1 cut(s) 524
BstAUI TGTACA 1 cut(s) 908
BstC8I GCNNGC 4 cut(s) 163, 481, 485, 968
BstDEI CTNAG 2 cut(s) 342, 510
BstENI CCTNNNNNAGG 2 cut(s) 477, 672
BstF5I GGATG 2 cut(s) 256, 598
BstH2I RGCGCY 1 cut(s) 694
BstHHI GCGC 1 cut(s) 693
BstKTI GATC 7 cut(s) 271, 276, 358, 762, 799, 858, 990
BstMAI GTCTC 2 cut(s) 221, 623
BstMBI GATC 7 cut(s) 268, 273, 355, 759, 796, 855, 987
BstMCI CGRYCG 4 cut(s) 81, 148, 207, 239
BstMWI GCNNNNNNNGC 7 cut(s) 80, 132, 138, 141, 144, 295, 925
BstNI CCWGG 4 cut(s) 353, 429, 792, 935
BstSCI CCNGG 6 cut(s) 54, 351, 427, 601, 790, 933
BstV1I GCAGC 4 cut(s) 184, 276, 358, 634
BstV2I GAAGAC 2 cut(s) 82, 671
BstX2I RGATCY 4 cut(s) 273, 355, 855, 987
BstYI RGATCY 4 cut(s) 273, 355, 855, 987
BstZI CGGCCG 1 cut(s) 145
BsuRI GGCC 4 cut(s) 74, 147, 933, 1016
BtsCI GGATG 2 cut(s) 256, 598
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 2 cut(s) 411, 613
Cac8I GCNNGC 4 cut(s) 163, 481, 485, 968
CfoI GCGC 1 cut(s) 693
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 3 cut(s) 64, 392, 931
Csp6I GTAC 4 cut(s) 59, 367, 561, 909
CviAII CATG 3 cut(s) 423, 718, 959
CviQI GTAC 4 cut(s) 59, 367, 561, 909
DdeI CTNAG 2 cut(s) 342, 510
DpnI GATC 7 cut(s) 270, 275, 357, 761, 798, 857, 989
DpnII GATC 7 cut(s) 268, 273, 355, 759, 796, 855, 987
DrdI GACNNNNNNGTC 1 cut(s) 235
DseDI GACNNNNNNGTC 1 cut(s) 235
EaeI YGGCCR 1 cut(s) 145
EagI CGGCCG 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 897
EarI CTCTTC 1 cut(s) 897
EciI GGCGGA 2 cut(s) 198, 868
Ecl136II GAGCTC 2 cut(s) 436, 634
EclXI CGGCCG 1 cut(s) 145
Eco130I CCWWGG 4 cut(s) 33, 329, 473, 673
Eco147I AGGCCT 1 cut(s) 1016
Eco24I GRGCYC 3 cut(s) 343, 438, 636
Eco47I GGWCC 2 cut(s) 64, 392
Eco52I CGGCCG 1 cut(s) 145
Eco53kI GAGCTC 2 cut(s) 436, 634
Eco57I CTGAAG 2 cut(s) 465, 709
Eco88I CYCGRG 1 cut(s) 336
EcoICRI GAGCTC 2 cut(s) 436, 634
EcoNI CCTNNNNNAGG 2 cut(s) 477, 672
EcoO109I RGGNCCY 1 cut(s) 392
EcoRII CCWGG 4 cut(s) 351, 427, 790, 933
EcoT14I CCWWGG 4 cut(s) 33, 329, 473, 673
EcoT38I GRGCYC 3 cut(s) 343, 438, 636
ErhI CCWWGG 4 cut(s) 33, 329, 473, 673
Esp3I CGTCTC 1 cut(s) 221
FaeI CATG 3 cut(s) 426, 721, 962
FalI AAGNNNNNCTT 2 cut(s) 666, 698
FaqI GGGAC 2 cut(s) 38, 850
FatI CATG 3 cut(s) 422, 717, 958
FauI CCCGC 1 cut(s) 476
FauNDI CATATG 2 cut(s) 294, 786
FokI GGATG 2 cut(s) 263, 585
FriOI GRGCYC 3 cut(s) 343, 438, 636
FspBI CTAG 3 cut(s) 330, 768, 1018
GlaI GCGC 1 cut(s) 692
GsaI CCCAGC 1 cut(s) 932
GsuI CTGGAG 2 cut(s) 335, 956
HaeII RGCGCY 1 cut(s) 694
HaeIII GGCC 4 cut(s) 74, 147, 933, 1016
HapII CCGG 5 cut(s) 56, 162, 180, 207, 603
HhaI GCGC 1 cut(s) 693
Hin1II CATG 3 cut(s) 426, 721, 962
Hin6I GCGC 1 cut(s) 691
HinP1I GCGC 1 cut(s) 691
HinfI GANTC 5 cut(s) 172, 321, 334, 398, 533
HpaII CCGG 5 cut(s) 56, 162, 180, 207, 603
HphI GGTGA 6 cut(s) 18, 274, 443, 479, 722, 806
Hpy166II GTNNAC 1 cut(s) 909
Hpy188I TCNGA 6 cut(s) 171, 273, 278, 569, 742, 947
Hpy188III TCNNGA 3 cut(s) 402, 545, 620
Hpy8I GTNNAC 1 cut(s) 909
Hpy99I CGWCG 2 cut(s) 25, 161
HpyAV CCTTC 4 cut(s) 204, 259, 383, 678
HpyCH4III ACNGT 6 cut(s) 30, 52, 237, 458, 617, 891
HpyCH4IV ACGT 2 cut(s) 306, 744
HpyCH4V TGCA 4 cut(s) 292, 298, 364, 580
HpyF10VI GCNNNNNNNGC 7 cut(s) 80, 132, 138, 141, 144, 295, 925
HpyF3I CTNAG 2 cut(s) 342, 510
HpySE526I ACGT 2 cut(s) 306, 744
Hsp92II CATG 3 cut(s) 426, 721, 962
HspAI GCGC 1 cut(s) 691
KpnI GGTACC 1 cut(s) 564
KroI GCCGGC 1 cut(s) 161
KroNI GCCGGC 1 cut(s) 163
Kzo9I GATC 7 cut(s) 268, 273, 355, 759, 796, 855, 987
LmnI GCTCC 3 cut(s) 131, 354, 441
Lsp1109I GCAGC 4 cut(s) 184, 276, 358, 634
MaeI CTAG 3 cut(s) 330, 768, 1018
MaeII ACGT 2 cut(s) 306, 744
MaeIII GTNAC 4 cut(s) 24, 46, 458, 710
MalI GATC 7 cut(s) 270, 275, 357, 761, 798, 857, 989
MbiI CCGCTC 1 cut(s) 222
MboI GATC 7 cut(s) 268, 273, 355, 759, 796, 855, 987
MflI RGATCY 4 cut(s) 273, 355, 855, 987
MhlI GDGCHC 3 cut(s) 343, 438, 636
MluCI AATT 2 cut(s) 699, 833
MlyI GAGTC 3 cut(s) 181, 328, 392
MmeI TCCRAC 1 cut(s) 925
MreI CGCCGGCG 1 cut(s) 161
MroNI GCCGGC 1 cut(s) 161
MseI TTAA 4 cut(s) 525, 698, 975, 1002
MslI CAYNNNNRTG 1 cut(s) 957
MspCI CTTAAG 1 cut(s) 524
MspI CCGG 5 cut(s) 56, 162, 180, 207, 603
MspR9I CCNGG 6 cut(s) 56, 353, 429, 603, 792, 935
MvaI CCWGG 4 cut(s) 353, 429, 792, 935
MwoI GCNNNNNNNGC 7 cut(s) 80, 132, 138, 141, 144, 295, 925
NaeI GCCGGC 1 cut(s) 163
NciI CCSGG 2 cut(s) 56, 603
NdeI CATATG 2 cut(s) 294, 786
NdeII GATC 7 cut(s) 268, 273, 355, 759, 796, 855, 987
NgoMIV GCCGGC 1 cut(s) 161
NlaIII CATG 3 cut(s) 426, 721, 962
NlaIV GGNNCC 1 cut(s) 562
NmeAIII GCCGAG 1 cut(s) 50
NmuCI GTSAC 2 cut(s) 24, 710
PceI AGGCCT 1 cut(s) 1016
PcsI WCGNNNNNNNCGW 3 cut(s) 20, 26, 236
PdiI GCCGGC 1 cut(s) 163
PfeI GAWTC 2 cut(s) 321, 533
PflMI CCANNNNNTGG 1 cut(s) 428
PfoI TCCNGGA 2 cut(s) 351, 601
PleI GAGTC 3 cut(s) 180, 328, 392
PpsI GAGTC 3 cut(s) 180, 328, 392
PpuMI RGGWCCY 1 cut(s) 392
Psp124BI GAGCTC 2 cut(s) 438, 636
Psp5II RGGWCCY 1 cut(s) 392
Psp6I CCWGG 4 cut(s) 351, 427, 790, 933
PspFI CCCAGC 1 cut(s) 928
PspGI CCWGG 4 cut(s) 351, 427, 790, 933
PspN4I GGNNCC 1 cut(s) 562
PspPI GGNCC 3 cut(s) 64, 392, 931
PspPPI RGGWCCY 1 cut(s) 392
PsuI RGATCY 4 cut(s) 273, 355, 855, 987
RsaI GTAC 4 cut(s) 60, 368, 562, 910
RsaNI GTAC 4 cut(s) 59, 367, 561, 909
RseI CAYNNNNRTG 1 cut(s) 957
SacI GAGCTC 2 cut(s) 438, 636
SaqAI TTAA 4 cut(s) 525, 698, 975, 1002
Sau3AI GATC 7 cut(s) 268, 273, 355, 759, 796, 855, 987
Sau96I GGNCC 3 cut(s) 64, 392, 931
SchI GAGTC 3 cut(s) 181, 328, 392
ScrFI CCNGG 6 cut(s) 56, 353, 429, 603, 792, 935
SduI GDGCHC 3 cut(s) 343, 438, 636
SgrAI CRCCGGYG 1 cut(s) 161
SinI GGWCC 2 cut(s) 64, 392
SmiMI CAYNNNNRTG 1 cut(s) 957
SmlI CTYRAG 2 cut(s) 524, 545
SmoI CTYRAG 2 cut(s) 524, 545
Sse9I AATT 2 cut(s) 699, 833
SseBI AGGCCT 1 cut(s) 1016
SspMI CTAG 3 cut(s) 330, 768, 1018
SstI GAGCTC 2 cut(s) 438, 636
StuI AGGCCT 1 cut(s) 1016
StyD4I CCNGG 6 cut(s) 54, 351, 427, 601, 790, 933
StyI CCWWGG 4 cut(s) 33, 329, 473, 673
TaaI ACNGT 6 cut(s) 30, 52, 237, 458, 617, 891
TaiI ACGT 2 cut(s) 309, 747
TaqI TCGA 1 cut(s) 621
TaqII GACCGA 1 cut(s) 67
TasI AATT 2 cut(s) 699, 833
TatI WGTACW 2 cut(s) 366, 908
TauI GCSGC 8 cut(s) 86, 135, 138, 141, 144, 147, 203, 225
TfiI GAWTC 2 cut(s) 321, 533
Tru1I TTAA 4 cut(s) 525, 698, 975, 1002
Tru9I TTAA 4 cut(s) 525, 698, 975, 1002
TscAI CASTG 2 cut(s) 418, 620
TseFI GTSAC 2 cut(s) 24, 710
TseI GCWGC 4 cut(s) 197, 289, 346, 647
Tsp45I GTSAC 2 cut(s) 24, 710
TspDTI ATGAA 5 cut(s) 402, 574, 587, 674, 773
TspRI CASTG 2 cut(s) 418, 620
Van91I CCANNNNNTGG 1 cut(s) 428
Vha464I CTTAAG 1 cut(s) 524
VpaK11BI GGWCC 2 cut(s) 64, 392
XagI CCTNNNNNAGG 2 cut(s) 477, 672
XcmI CCANNNNNNNNNTGG 2 cut(s) 40, 461
XmaJI CCTAGG 1 cut(s) 329
XspI CTAG 3 cut(s) 330, 768, 1018
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.