RchiOBHm_Chr3g0452511

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
3090341 .. 3092652
2312 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41965

Sequence Viewer

Length: 1017 bp
ATGGCTCTCTCCTCGTCTTCGTCGTCACCGTCCAAGGGCATAGTGGTAACTGTCCCGGTACTGGTCCTCTCGGTCTCGGTCGCCGCCGTCTTCTTCTTCTTCCTCCTCTCCTCTCTCTCGTCCTGCTCCTGCGGCGGCGTCGGCCGTATCGCCGTCGCCGGCGTTCCGAGTCAGTCCGGCGGAGGAGATGTGGCTGCGGCGACCGGAAGGTGGGAGAGCGGCGAGACGATACGGTCGTCAAAGGAGGATGTGGAGTGGGTGAAGGATCAGATCCGAGTGAATGGGCTGCATATGCAGGATAACGTGTTGCGTAAGGGAATTAACCCTAGGACTCGGGCTCAGCAGCTCCAGGATCTCTTGCAGTACAAGGGTATATCTCACTATGAAGGACCTGACTCTGGAAATCACACTGCCCTCCCATGCCCTGGTGAGCTCCTTACTGAAGAACACCACAGTAACTATGGTGAGCCTTGGGCAGGCGGGCGAGATGTTTTTGAGTTCCTTGCTCAGTCCAGCCATCTTAAGCCTGATTCAAAGGTTCTTGAGATTGGCTGTGGTACCCTCCGAGTTGGTTTGCACTTCATTCGTTATCTTCATCCCGGACACTTCCACTGTCTCGAAAGAGATGAGCTCTCACTAATGGCTGCCTTTAGATATGAGCTTCCTTCCCAAGGTCTTCTTCATAAGCGCCCTTTAATTGTGAAAGGTGACAACATGGACTTCAGCAGATTTGGTTCTGACGTTGTGTATGATTTGATCTATGCTAGTGCTGTGTTTCTTCATATGCCTGGTGATCTTGTGTGGCTTGGGTTAGAGAGATTGACAAATAAATTGAAACCTTATGATGGGCGGATCTTTGTGTCCCATAATATCAAGTTCTGCTCACGGTTGGGAGGGGACGAGTGTAAAAAACGGCTTACGAAGCTGGGCCTGGAGTATGTCGGAAAACATACACATGACAGCTTGCTTTTTAATCATTATGAGATCTGGTTTGAGTTTAAGCGGACAAAGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

338

Amino Acids

37.53

Weight (kDa)

7.7

Isoelectric Point (pI)

45.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_12 PF08242 181 - 283 1.6e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013395)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 232
Acc65I GGTACC 1 cut(s) 557
AccB1I GGYRCC 1 cut(s) 557
AccB7I CCANNNNNTGG 1 cut(s) 425
AccBSI CCGCTC 1 cut(s) 219
AciI CCGC 9 cut(s) 84, 132, 135, 180, 197, 219, 480, 850, 1003
AclWI GGATC 4 cut(s) 265, 273, 360, 860
AcoI YGGCCR 1 cut(s) 142
AcuI CTGAAG 2 cut(s) 462, 706
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 3 cut(s) 60, 365, 559
AfiI CCNNNNNNNGG 8 cut(s) 35, 61, 210, 398, 425, 476, 671, 845
AflII CTTAAG 1 cut(s) 521
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 2 cut(s) 534, 835
AjnI CCWGG 4 cut(s) 348, 424, 787, 930
AjuI GAANNNNNNNTTGG 2 cut(s) 663, 695
AluBI AGCT 6 cut(s) 346, 433, 631, 661, 925, 963
AluI AGCT 6 cut(s) 346, 433, 631, 661, 925, 963
Alw21I GWGCWC 2 cut(s) 435, 633
Alw26I GTCTC 3 cut(s) 79, 218, 620
AlwI GGATC 4 cut(s) 265, 273, 360, 860
Ama87I CYCGRG 1 cut(s) 333
AoxI GGCC 3 cut(s) 142, 928, 1011
ApeKI GCWGC 4 cut(s) 194, 286, 343, 644
Asp718I GGTACC 1 cut(s) 557
AspA2I CCTAGG 1 cut(s) 326
AspLEI GCGC 1 cut(s) 690
AspS9I GGNCC 3 cut(s) 64, 389, 928
AsuC2I CCSGG 2 cut(s) 56, 600
AsuHPI GGTGA 6 cut(s) 18, 271, 440, 476, 719, 803
AvaI CYCGRG 1 cut(s) 333
AvaII GGWCC 2 cut(s) 64, 389
AvrII CCTAGG 1 cut(s) 326
BaeI ACNNNNGTAYC 2 cut(s) 221, 254
BanI GGYRCC 1 cut(s) 557
BanII GRGCYC 3 cut(s) 340, 435, 633
BbsI GAAGAC 3 cut(s) 9, 82, 668
Bbv12I GWGCWC 2 cut(s) 435, 633
BbvI GCAGC 4 cut(s) 181, 273, 355, 631
BccI CCATC 2 cut(s) 525, 839
BceAI ACGGC 4 cut(s) 71, 129, 137, 929
BcgI CGANNNNNNTGC 2 cut(s) 566, 600
BciT130I CCWGG 4 cut(s) 350, 426, 789, 932
BcnI CCSGG 2 cut(s) 56, 600
BcoDI GTCTC 3 cut(s) 79, 218, 620
BfaI CTAG 3 cut(s) 327, 765, 1015
BfoI RGCGCY 1 cut(s) 691
BfrI CTTAAG 1 cut(s) 521
BglII AGATCT 1 cut(s) 984
BisI GCNGC 9 cut(s) 84, 133, 136, 195, 198, 220, 287, 344, 645
BlnI CCTAGG 1 cut(s) 326
BlpI GCTNAGC 1 cut(s) 339
BlsI GCNGC 9 cut(s) 85, 134, 137, 196, 199, 221, 288, 345, 646
Bme1390I CCNGG 6 cut(s) 56, 350, 426, 600, 789, 932
Bme18I GGWCC 2 cut(s) 64, 389
BmeT110I CYCGRG 1 cut(s) 333
BmgT120I GGNCC 3 cut(s) 64, 389, 928
BmiI GGNNCC 1 cut(s) 559
BmrFI CCNGG 6 cut(s) 56, 350, 426, 600, 789, 932
BpiI GAAGAC 3 cut(s) 9, 82, 668
BplI GAGNNNNNCTC 2 cut(s) 615, 647
BpmI CTGGAG 2 cut(s) 332, 953
Bpu1102I GCTNAGC 1 cut(s) 339
BpuEI CTTGAG 1 cut(s) 563
BpuMI CCSGG 2 cut(s) 56, 600
BsaHI GRCGYC 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 79
BsaJI CCNNGG 5 cut(s) 33, 326, 424, 470, 670
BsaWI WCCGGW 1 cut(s) 203
BsaXI ACNNNNNCTCC 2 cut(s) 174, 204
Bsc4I CCNNNNNNNGG 8 cut(s) 35, 61, 210, 398, 425, 476, 671, 845
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 66
BseBI CCWGG 4 cut(s) 350, 426, 789, 932
BseDI CCNNGG 5 cut(s) 33, 326, 424, 470, 670
BseGI GGATG 2 cut(s) 253, 595
BseLI CCNNNNNNNGG 8 cut(s) 35, 61, 210, 398, 425, 476, 671, 845
BseMII CTCAG 2 cut(s) 353, 521
BseNI ACTGG 1 cut(s) 66
BseRI GAGGAG 3 cut(s) 95, 100, 198
BseX3I CGGCCG 1 cut(s) 142
BseXI GCAGC 4 cut(s) 181, 273, 355, 631
BseYI CCCAGC 1 cut(s) 925
Bsh1285I CGRYCG 4 cut(s) 81, 145, 204, 236
BshFI GGCC 3 cut(s) 144, 930, 1013
BshNI GGYRCC 1 cut(s) 557
BsiEI CGRYCG 4 cut(s) 81, 145, 204, 236
BsiHKAI GWGCWC 2 cut(s) 435, 633
BsiHKCI CYCGRG 1 cut(s) 333
BsiSI CCGG 5 cut(s) 56, 159, 177, 204, 600
BslFI GGGAC 3 cut(s) 38, 847, 911
BslI CCNNNNNNNGG 8 cut(s) 35, 61, 210, 398, 425, 476, 671, 845
BsmAI GTCTC 3 cut(s) 79, 218, 620
BsmBI CGTCTC 1 cut(s) 218
BsmFI GGGAC 3 cut(s) 38, 847, 911
BsnI GGCC 3 cut(s) 144, 930, 1013
Bso31I GGTCTC 1 cut(s) 79
BsoBI CYCGRG 1 cut(s) 333
Bsp1286I GDGCHC 3 cut(s) 340, 435, 633
Bsp143I GATC 7 cut(s) 265, 270, 352, 756, 793, 852, 984
Bsp1720I GCTNAGC 1 cut(s) 339
BspACI CCGC 9 cut(s) 84, 132, 135, 180, 197, 219, 480, 850, 1003
BspANI GGCC 3 cut(s) 144, 930, 1013
BspCNI CTCAG 2 cut(s) 352, 520
BspLI GGNNCC 1 cut(s) 559
BspPI GGATC 4 cut(s) 265, 273, 360, 860
BspT107I GGYRCC 1 cut(s) 557
BspTI CTTAAG 1 cut(s) 521
BspTNI GGTCTC 1 cut(s) 79
BsrBI CCGCTC 1 cut(s) 219
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 1 cut(s) 66
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 5 cut(s) 33, 326, 424, 470, 670
BssMI GATC 7 cut(s) 265, 270, 352, 756, 793, 852, 984
BssNI GRCGYC 1 cut(s) 138
BssT1I CCWWGG 4 cut(s) 33, 326, 470, 670
Bst2UI CCWGG 4 cut(s) 350, 426, 789, 932
Bst4CI ACNGT 6 cut(s) 30, 52, 234, 455, 614, 888
BstACI GRCGYC 1 cut(s) 138
BstAFI CTTAAG 1 cut(s) 521
BstC8I GCNNGC 4 cut(s) 160, 478, 482, 965
BstDEI CTNAG 2 cut(s) 339, 507
BstENI CCTNNNNNAGG 2 cut(s) 474, 669
BstF5I GGATG 2 cut(s) 253, 595
BstH2I RGCGCY 1 cut(s) 691
BstHHI GCGC 1 cut(s) 690
BstKTI GATC 7 cut(s) 268, 273, 355, 759, 796, 855, 987
BstMAI GTCTC 3 cut(s) 79, 218, 620
BstMBI GATC 7 cut(s) 265, 270, 352, 756, 793, 852, 984
BstMCI CGRYCG 4 cut(s) 81, 145, 204, 236
BstMWI GCNNNNNNNGC 4 cut(s) 132, 141, 292, 922
BstNI CCWGG 4 cut(s) 350, 426, 789, 932
BstSCI CCNGG 6 cut(s) 54, 348, 424, 598, 787, 930
BstV1I GCAGC 4 cut(s) 181, 273, 355, 631
BstV2I GAAGAC 3 cut(s) 9, 82, 668
BstX2I RGATCY 4 cut(s) 270, 352, 852, 984
BstYI RGATCY 4 cut(s) 270, 352, 852, 984
BstZI CGGCCG 1 cut(s) 142
BsuRI GGCC 3 cut(s) 144, 930, 1013
BtsCI GGATG 2 cut(s) 253, 595
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 2 cut(s) 408, 610
Cac8I GCNNGC 4 cut(s) 160, 478, 482, 965
CfoI GCGC 1 cut(s) 690
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 3 cut(s) 64, 389, 928
CseI GACGC 1 cut(s) 127
Csp6I GTAC 3 cut(s) 59, 364, 558
CviAII CATG 3 cut(s) 420, 715, 956
CviQI GTAC 3 cut(s) 59, 364, 558
DdeI CTNAG 2 cut(s) 339, 507
DpnI GATC 7 cut(s) 267, 272, 354, 758, 795, 854, 986
DpnII GATC 7 cut(s) 265, 270, 352, 756, 793, 852, 984
DrdI GACNNNNNNGTC 1 cut(s) 232
DseDI GACNNNNNNGTC 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 142
EagI CGGCCG 1 cut(s) 142
EciI GGCGGA 2 cut(s) 195, 865
Ecl136II GAGCTC 2 cut(s) 433, 631
EclXI CGGCCG 1 cut(s) 142
Eco130I CCWWGG 4 cut(s) 33, 326, 470, 670
Eco147I AGGCCT 1 cut(s) 1013
Eco24I GRGCYC 3 cut(s) 340, 435, 633
Eco31I GGTCTC 1 cut(s) 79
Eco47I GGWCC 2 cut(s) 64, 389
Eco52I CGGCCG 1 cut(s) 142
Eco53kI GAGCTC 2 cut(s) 433, 631
Eco57I CTGAAG 2 cut(s) 462, 706
Eco88I CYCGRG 1 cut(s) 333
EcoICRI GAGCTC 2 cut(s) 433, 631
EcoNI CCTNNNNNAGG 2 cut(s) 474, 669
EcoO109I RGGNCCY 1 cut(s) 389
EcoRII CCWGG 4 cut(s) 348, 424, 787, 930
EcoT14I CCWWGG 4 cut(s) 33, 326, 470, 670
EcoT38I GRGCYC 3 cut(s) 340, 435, 633
ErhI CCWWGG 4 cut(s) 33, 326, 470, 670
Esp3I CGTCTC 1 cut(s) 218
FaeI CATG 3 cut(s) 423, 718, 959
FalI AAGNNNNNCTT 2 cut(s) 663, 695
FaqI GGGAC 3 cut(s) 38, 847, 911
FatI CATG 3 cut(s) 419, 714, 955
FauI CCCGC 1 cut(s) 473
FauNDI CATATG 2 cut(s) 291, 783
Fnu4HI GCNGC 9 cut(s) 84, 133, 136, 195, 198, 220, 287, 344, 645
FokI GGATG 2 cut(s) 260, 582
FriOI GRGCYC 3 cut(s) 340, 435, 633
Fsp4HI GCNGC 9 cut(s) 84, 133, 136, 195, 198, 220, 287, 344, 645
FspBI CTAG 3 cut(s) 327, 765, 1015
GlaI GCGC 1 cut(s) 689
GluI GCNGC 9 cut(s) 84, 133, 136, 195, 198, 220, 287, 344, 645
GsaI CCCAGC 1 cut(s) 929
GsuI CTGGAG 2 cut(s) 332, 953
HaeII RGCGCY 1 cut(s) 691
HaeIII GGCC 3 cut(s) 144, 930, 1013
HapII CCGG 5 cut(s) 56, 159, 177, 204, 600
HgaI GACGC 1 cut(s) 127
HhaI GCGC 1 cut(s) 690
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 3 cut(s) 423, 718, 959
Hin6I GCGC 1 cut(s) 688
HinP1I GCGC 1 cut(s) 688
HinfI GANTC 4 cut(s) 169, 331, 395, 530
HpaII CCGG 5 cut(s) 56, 159, 177, 204, 600
HphI GGTGA 6 cut(s) 18, 271, 440, 476, 719, 803
Hpy188I TCNGA 6 cut(s) 168, 270, 275, 566, 739, 944
Hpy188III TCNNGA 3 cut(s) 399, 542, 617
Hpy99I CGWCG 3 cut(s) 25, 143, 158
HpyAV CCTTC 4 cut(s) 201, 256, 380, 675
HpyCH4III ACNGT 6 cut(s) 30, 52, 234, 455, 614, 888
HpyCH4IV ACGT 2 cut(s) 303, 741
HpyCH4V TGCA 4 cut(s) 289, 295, 361, 577
HpyF10VI GCNNNNNNNGC 4 cut(s) 132, 141, 292, 922
HpyF3I CTNAG 2 cut(s) 339, 507
HpySE526I ACGT 2 cut(s) 303, 741
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 3 cut(s) 423, 718, 959
HspAI GCGC 1 cut(s) 688
KpnI GGTACC 1 cut(s) 561
KroI GCCGGC 1 cut(s) 158
KroNI GCCGGC 1 cut(s) 160
Kzo9I GATC 7 cut(s) 265, 270, 352, 756, 793, 852, 984
LmnI GCTCC 3 cut(s) 131, 351, 438
Lsp1109I GCAGC 4 cut(s) 181, 273, 355, 631
MaeI CTAG 3 cut(s) 327, 765, 1015
MaeII ACGT 2 cut(s) 303, 741
MaeIII GTNAC 4 cut(s) 24, 46, 455, 707
MalI GATC 7 cut(s) 267, 272, 354, 758, 795, 854, 986
MbiI CCGCTC 1 cut(s) 219
MboI GATC 7 cut(s) 265, 270, 352, 756, 793, 852, 984
MflI RGATCY 4 cut(s) 270, 352, 852, 984
MhlI GDGCHC 3 cut(s) 340, 435, 633
MluCI AATT 3 cut(s) 318, 696, 830
MlyI GAGTC 3 cut(s) 178, 325, 389
MmeI TCCRAC 1 cut(s) 922
MreI CGCCGGCG 1 cut(s) 158
MroNI GCCGGC 1 cut(s) 158
MseI TTAA 5 cut(s) 321, 522, 695, 972, 999
MslI CAYNNNNRTG 1 cut(s) 954
MspCI CTTAAG 1 cut(s) 521
MspI CCGG 5 cut(s) 56, 159, 177, 204, 600
MspR9I CCNGG 6 cut(s) 56, 350, 426, 600, 789, 932
MvaI CCWGG 4 cut(s) 350, 426, 789, 932
MwoI GCNNNNNNNGC 4 cut(s) 132, 141, 292, 922
NaeI GCCGGC 1 cut(s) 160
NciI CCSGG 2 cut(s) 56, 600
NdeI CATATG 2 cut(s) 291, 783
NdeII GATC 7 cut(s) 265, 270, 352, 756, 793, 852, 984
NgoMIV GCCGGC 1 cut(s) 158
NlaIII CATG 3 cut(s) 423, 718, 959
NlaIV GGNNCC 1 cut(s) 559
NmuCI GTSAC 2 cut(s) 24, 707
PceI AGGCCT 1 cut(s) 1013
PcsI WCGNNNNNNNCGW 3 cut(s) 20, 26, 233
PdiI GCCGGC 1 cut(s) 160
PfeI GAWTC 1 cut(s) 530
PflMI CCANNNNNTGG 1 cut(s) 425
PfoI TCCNGGA 2 cut(s) 348, 598
PkrI GCNGC 9 cut(s) 85, 134, 137, 196, 199, 221, 288, 345, 646
PleI GAGTC 3 cut(s) 177, 325, 389
PpsI GAGTC 3 cut(s) 177, 325, 389
PpuMI RGGWCCY 1 cut(s) 389
Psp124BI GAGCTC 2 cut(s) 435, 633
Psp5II RGGWCCY 1 cut(s) 389
Psp6I CCWGG 4 cut(s) 348, 424, 787, 930
PspFI CCCAGC 1 cut(s) 925
PspGI CCWGG 4 cut(s) 348, 424, 787, 930
PspN4I GGNNCC 1 cut(s) 559
PspPI GGNCC 3 cut(s) 64, 389, 928
PspPPI RGGWCCY 1 cut(s) 389
PsuI RGATCY 4 cut(s) 270, 352, 852, 984
RsaI GTAC 3 cut(s) 60, 365, 559
RsaNI GTAC 3 cut(s) 59, 364, 558
RseI CAYNNNNRTG 1 cut(s) 954
SacI GAGCTC 2 cut(s) 435, 633
SaqAI TTAA 5 cut(s) 321, 522, 695, 972, 999
SatI GCNGC 9 cut(s) 84, 133, 136, 195, 198, 220, 287, 344, 645
Sau3AI GATC 7 cut(s) 265, 270, 352, 756, 793, 852, 984
Sau96I GGNCC 3 cut(s) 64, 389, 928
SchI GAGTC 3 cut(s) 178, 325, 389
ScrFI CCNGG 6 cut(s) 56, 350, 426, 600, 789, 932
SduI GDGCHC 3 cut(s) 340, 435, 633
SgrAI CRCCGGYG 1 cut(s) 158
SinI GGWCC 2 cut(s) 64, 389
SmiMI CAYNNNNRTG 1 cut(s) 954
SmlI CTYRAG 2 cut(s) 521, 542
SmoI CTYRAG 2 cut(s) 521, 542
Sse9I AATT 3 cut(s) 318, 696, 830
SseBI AGGCCT 1 cut(s) 1013
SsiI CCGC 9 cut(s) 84, 132, 135, 180, 197, 219, 480, 850, 1003
SspMI CTAG 3 cut(s) 327, 765, 1015
SstI GAGCTC 2 cut(s) 435, 633
StuI AGGCCT 1 cut(s) 1013
StyD4I CCNGG 6 cut(s) 54, 348, 424, 598, 787, 930
StyI CCWWGG 4 cut(s) 33, 326, 470, 670
TaaI ACNGT 6 cut(s) 30, 52, 234, 455, 614, 888
TaiI ACGT 2 cut(s) 306, 744
TaqI TCGA 1 cut(s) 618
TaqII GACCGA 2 cut(s) 61, 67
TasI AATT 3 cut(s) 318, 696, 830
TatI WGTACW 1 cut(s) 363
TauI GCSGC 5 cut(s) 86, 135, 138, 200, 222
TfiI GAWTC 1 cut(s) 530
Tru1I TTAA 5 cut(s) 321, 522, 695, 972, 999
Tru9I TTAA 5 cut(s) 321, 522, 695, 972, 999
TscAI CASTG 2 cut(s) 415, 617
TseFI GTSAC 2 cut(s) 24, 707
TseI GCWGC 4 cut(s) 194, 286, 343, 644
Tsp45I GTSAC 2 cut(s) 24, 707
TspDTI ATGAA 5 cut(s) 399, 571, 584, 671, 770
TspRI CASTG 2 cut(s) 415, 617
Van91I CCANNNNNTGG 1 cut(s) 425
Vha464I CTTAAG 1 cut(s) 521
VpaK11BI GGWCC 2 cut(s) 64, 389
XagI CCTNNNNNAGG 2 cut(s) 474, 669
XcmI CCANNNNNNNNNTGG 2 cut(s) 40, 458
XmaJI CCTAGG 1 cut(s) 326
XspI CTAG 3 cut(s) 327, 765, 1015
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.