pycom16g23200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0013395
Physical Location & Seq
Forward (+)
23852459 .. 23853759
1301 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g23200.2

Sequence Viewer

Length: 690 bp
ATGTCGATGGACCCAGTGTTGGCGTGGCGGAGGGCGGAGGGTGGAGGAGGAGAGACGATATGGTGGTCGAAGGAGGATGTGGAGTGGGTGAGGGATCATATCCGAGTGAATGGGTTGCATATGCAGGATAACGTTTTGAGGAAGGGAATTAACCCTCGCACCAGAGCTCAGCAGCTTGAAGATCTCTCGCAAGATTTTTCTCTCTCGTTGTACTTTACTGTGCCTGCAGTTATAACATATGCACACGTTTGTGGGTCAAAGGAAGTAGTTGGTTTGTATTTCATTCACCATCTTAATCCCGGACACTTCAATTGTCTTGAAAGAGATGAGCTCTCGCTAATGGCTGCCTTCAGATACGAGCTTCCTTCCCAAGGTCTTCTGCACAAGCGCCCTTTGATTGTGAAAGGCGACAACATGGACTTGAGCAGATTTGGGTCCGATGTTGTGTATGACTTGATATATGCTAGCGCTGTGTTTCTTCATAAGCCTGATAAGCTTGTGTGGGTTGGATTAGAGAGATTGACAAATAAACTGAAACCCTATGATGGGCGAATCGTCGTTTCCCATAATATCAAATTCTGTTCGCAGTTGGGAGGAGACGAGTGTACAAAGCAGCTCACGAGTTTAGGCCTGGAGTATGTCGGAAAGCATACACATGCCAGCTTGCTATTTAATCACTATGAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_23

Protein Analysis

230

Amino Acids

26.16

Weight (kDa)

6.63

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013395)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05100
fragaria_vesca FvH4_6g03940
malus_domestica MD04G1217100.v1.1 MD12G1234100.v1.1
prunus_persica Prupe.6G337200_v2.0.a1 Prupe.6G337200_v2.0.a1
pyrus_communis pycom04g19320 pycom12g21650 pycom16g23200
rosa_chinensis RchiOBHm_Chr3g0452511
rosa_laevigata RLG00000025596
rosa_roxburghii Rroxscaffold_6G00429540
rosa_rugosa Rorug02G0641200
rosa_samantha Rh3AG043200 Rh3BG044900 Rh3CG043500 Rh3DG044300
rosa_wichuraiana Rw3G003350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 233
AciI CCGC 2 cut(s) 28, 35
AclI AACGTT 1 cut(s) 132
AclWI GGATC 1 cut(s) 102
AcsI RAATTY 1 cut(s) 575
AcuI CTGAAG 1 cut(s) 334
AfaI GTAC 2 cut(s) 212, 607
AfeI AGCGCT 1 cut(s) 469
AfiI CCNNNNNNNGG 4 cut(s) 19, 371, 545, 546
AflIII ACRYGT 1 cut(s) 244
AgsI TTSAA 3 cut(s) 179, 310, 320
AjnI CCWGG 1 cut(s) 630
AleI CACNNNNGTG 1 cut(s) 249
AluBI AGCT 7 cut(s) 167, 175, 331, 361, 496, 616, 663
AluI AGCT 7 cut(s) 167, 175, 331, 361, 496, 616, 663
Alw21I GWGCWC 2 cut(s) 169, 333
Alw26I GTCTC 2 cut(s) 47, 591
AlwI GGATC 1 cut(s) 102
Aor51HI AGCGCT 1 cut(s) 469
AoxI GGCC 1 cut(s) 628
ApeKI GCWGC 3 cut(s) 172, 344, 613
ApoI RAATTY 1 cut(s) 575
AspLEI GCGC 2 cut(s) 390, 470
AspS9I GGNCC 2 cut(s) 10, 435
AsuC2I CCSGG 1 cut(s) 300
AsuHPI GGTGA 2 cut(s) 100, 278
AsuNHI GCTAGC 1 cut(s) 464
AvaII GGWCC 2 cut(s) 10, 435
BanII GRGCYC 2 cut(s) 169, 333
BauI CACGAG 1 cut(s) 619
BbsI GAAGAC 1 cut(s) 368
Bbv12I GWGCWC 2 cut(s) 169, 333
BbvI GCAGC 3 cut(s) 184, 331, 625
BccI CCATC 2 cut(s) 297, 539
BciT130I CCWGG 1 cut(s) 632
BcnI CCSGG 1 cut(s) 300
BcoDI GTCTC 2 cut(s) 47, 591
BfaI CTAG 2 cut(s) 465, 688
BfmI CTRYAG 1 cut(s) 225
BfoI RGCGCY 2 cut(s) 391, 471
BglII AGATCT 1 cut(s) 181
BisI GCNGC 3 cut(s) 173, 345, 614
BlpI GCTNAGC 1 cut(s) 168
BlsI GCNGC 3 cut(s) 174, 346, 615
Bme1390I CCNGG 2 cut(s) 300, 632
Bme18I GGWCC 2 cut(s) 10, 435
BmgT120I GGNCC 2 cut(s) 10, 435
BmiI GGNNCC 2 cut(s) 12, 436
BmrFI CCNGG 2 cut(s) 300, 632
BmrI ACTGGG 1 cut(s) 8
BmtI GCTAGC 1 cut(s) 468
BmuI ACTGGG 1 cut(s) 8
BpiI GAAGAC 1 cut(s) 368
BplI GAGNNNNNCTC 2 cut(s) 315, 347
BpmI CTGGAG 1 cut(s) 653
Bpu1102I GCTNAGC 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 442
BpuMI CCSGG 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 370
Bsc4I CCNNNNNNNGG 4 cut(s) 19, 371, 545, 546
Bse1I ACTGG 1 cut(s) 14
BseBI CCWGG 1 cut(s) 632
BseDI CCNNGG 1 cut(s) 370
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 4 cut(s) 19, 371, 545, 546
BseMII CTCAG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 14
BseRI GAGGAG 3 cut(s) 60, 63, 609
BseXI GCAGC 3 cut(s) 184, 331, 625
BsgI GTGCAG 1 cut(s) 365
BshFI GGCC 1 cut(s) 630
BsiHKAI GWGCWC 2 cut(s) 169, 333
BsiSI CCGG 1 cut(s) 300
BslI CCNNNNNNNGG 4 cut(s) 19, 371, 545, 546
BsmAI GTCTC 2 cut(s) 47, 591
BsmBI CGTCTC 2 cut(s) 47, 591
BsnI GGCC 1 cut(s) 630
Bsp1286I GDGCHC 2 cut(s) 169, 333
Bsp1407I TGTACA 1 cut(s) 605
Bsp143I GATC 2 cut(s) 94, 181
Bsp1720I GCTNAGC 1 cut(s) 168
BspACI CCGC 2 cut(s) 28, 35
BspANI GGCC 1 cut(s) 630
BspCNI CTCAG 1 cut(s) 181
BspLI GGNNCC 2 cut(s) 12, 436
BspMAI CTGCAG 1 cut(s) 229
BspOI GCTAGC 1 cut(s) 468
BspPI GGATC 1 cut(s) 102
BsrGI TGTACA 1 cut(s) 605
BsrI ACTGG 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 370
BssMI GATC 2 cut(s) 94, 181
BssSI CACGAG 1 cut(s) 619
BssT1I CCWWGG 1 cut(s) 370
Bst2BI CACGAG 1 cut(s) 619
Bst2UI CCWGG 1 cut(s) 632
Bst4CI ACNGT 1 cut(s) 220
BstAUI TGTACA 1 cut(s) 605
BstC8I GCNNGC 4 cut(s) 225, 466, 661, 665
BstDEI CTNAG 1 cut(s) 168
BstENI CCTNNNNNAGG 1 cut(s) 369
BstF5I GGATG 1 cut(s) 82
BstH2I RGCGCY 2 cut(s) 391, 471
BstHHI GCGC 2 cut(s) 390, 470
BstKTI GATC 2 cut(s) 97, 184
BstMAI GTCTC 2 cut(s) 47, 591
BstMBI GATC 2 cut(s) 94, 181
BstMWI GCNNNNNNNGC 1 cut(s) 493
BstNI CCWGG 1 cut(s) 632
BstNSI RCATGY 1 cut(s) 659
BstSCI CCNGG 2 cut(s) 298, 630
BstSFI CTRYAG 1 cut(s) 225
BstV1I GCAGC 3 cut(s) 184, 331, 625
BstV2I GAAGAC 1 cut(s) 368
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 1 cut(s) 630
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 4 cut(s) 225, 466, 661, 665
CfoI GCGC 2 cut(s) 390, 470
Cfr13I GGNCC 2 cut(s) 10, 435
Csp6I GTAC 2 cut(s) 211, 606
CviAII CATG 2 cut(s) 415, 656
CviQI GTAC 2 cut(s) 211, 606
DdeI CTNAG 1 cut(s) 168
DpnI GATC 2 cut(s) 96, 183
DpnII GATC 2 cut(s) 94, 181
EciI GGCGGA 2 cut(s) 43, 50
Ecl136II GAGCTC 2 cut(s) 167, 331
Eco130I CCWWGG 1 cut(s) 370
Eco147I AGGCCT 1 cut(s) 630
Eco24I GRGCYC 2 cut(s) 169, 333
Eco47I GGWCC 2 cut(s) 10, 435
Eco47III AGCGCT 1 cut(s) 469
Eco53kI GAGCTC 2 cut(s) 167, 331
Eco57I CTGAAG 1 cut(s) 334
EcoICRI GAGCTC 2 cut(s) 167, 331
EcoNI CCTNNNNNAGG 1 cut(s) 369
EcoRII CCWGG 1 cut(s) 630
EcoT14I CCWWGG 1 cut(s) 370
EcoT38I GRGCYC 2 cut(s) 169, 333
ErhI CCWWGG 1 cut(s) 370
Esp3I CGTCTC 2 cut(s) 47, 591
FaeI CATG 2 cut(s) 418, 659
FatI CATG 2 cut(s) 414, 655
FauNDI CATATG 2 cut(s) 120, 238
Fnu4HI GCNGC 3 cut(s) 173, 345, 614
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 2 cut(s) 169, 333
Fsp4HI GCNGC 3 cut(s) 173, 345, 614
FspBI CTAG 2 cut(s) 465, 688
GlaI GCGC 2 cut(s) 389, 469
GluI GCNGC 3 cut(s) 173, 345, 614
GsuI CTGGAG 1 cut(s) 653
HaeII RGCGCY 2 cut(s) 391, 471
HaeIII GGCC 1 cut(s) 630
HapII CCGG 1 cut(s) 300
HhaI GCGC 2 cut(s) 390, 470
Hin1II CATG 2 cut(s) 418, 659
Hin6I GCGC 2 cut(s) 388, 468
HinP1I GCGC 2 cut(s) 388, 468
HindIII AAGCTT 1 cut(s) 494
HinfI GANTC 1 cut(s) 552
HpaII CCGG 1 cut(s) 300
HphI GGTGA 2 cut(s) 100, 278
Hpy166II GTNNAC 1 cut(s) 606
Hpy188I TCNGA 4 cut(s) 104, 353, 439, 644
Hpy188III TCNNGA 2 cut(s) 317, 619
Hpy8I GTNNAC 1 cut(s) 606
Hpy99I CGWCG 1 cut(s) 560
HpyAV CCTTC 4 cut(s) 64, 136, 358, 375
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4IV ACGT 2 cut(s) 132, 246
HpyCH4V TGCA 5 cut(s) 118, 124, 227, 242, 382
HpyF10VI GCNNNNNNNGC 1 cut(s) 493
HpyF3I CTNAG 1 cut(s) 168
HpySE526I ACGT 2 cut(s) 132, 246
Hsp92II CATG 2 cut(s) 418, 659
HspAI GCGC 2 cut(s) 388, 468
Kzo9I GATC 2 cut(s) 94, 181
LpnPI CCDG 9 cut(s) 27, 110, 175, 237, 313, 501, 617, 644, 673
Lsp1109I GCAGC 3 cut(s) 184, 331, 625
MaeI CTAG 2 cut(s) 465, 688
MaeII ACGT 2 cut(s) 132, 246
MalI GATC 2 cut(s) 96, 183
MboI GATC 2 cut(s) 94, 181
MboII GAAGA 3 cut(s) 191, 368, 470
MfeI CAATTG 1 cut(s) 310
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 2 cut(s) 169, 333
MluCI AATT 3 cut(s) 147, 310, 575
MmeI TCCRAC 2 cut(s) 487, 622
MnlI CCTC 9 cut(s) 24, 31, 38, 41, 67, 84, 132, 165, 587
MseI TTAA 3 cut(s) 150, 294, 672
MslI CAYNNNNRTG 2 cut(s) 249, 654
MspI CCGG 1 cut(s) 300
MspR9I CCNGG 2 cut(s) 300, 632
MunI CAATTG 1 cut(s) 310
MvaI CCWGG 1 cut(s) 632
MwoI GCNNNNNNNGC 1 cut(s) 493
NciI CCSGG 1 cut(s) 300
NdeI CATATG 2 cut(s) 120, 238
NdeII GATC 2 cut(s) 94, 181
NheI GCTAGC 1 cut(s) 464
NlaIII CATG 2 cut(s) 418, 659
NlaIV GGNNCC 2 cut(s) 12, 436
NspI RCATGY 1 cut(s) 659
OliI CACNNNNGTG 1 cut(s) 249
PceI AGGCCT 1 cut(s) 630
PfeI GAWTC 1 cut(s) 552
PfoI TCCNGGA 1 cut(s) 298
PkrI GCNGC 3 cut(s) 174, 346, 615
PsiI TTATAA 1 cut(s) 233
Psp124BI GAGCTC 2 cut(s) 169, 333
Psp1406I AACGTT 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 630
PspGI CCWGG 1 cut(s) 630
PspN4I GGNNCC 2 cut(s) 12, 436
PspPI GGNCC 2 cut(s) 10, 435
PstI CTGCAG 1 cut(s) 229
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 2 cut(s) 212, 607
RsaNI GTAC 2 cut(s) 211, 606
RseI CAYNNNNRTG 2 cut(s) 249, 654
SacI GAGCTC 2 cut(s) 169, 333
SaqAI TTAA 3 cut(s) 150, 294, 672
SatI GCNGC 3 cut(s) 173, 345, 614
Sau3AI GATC 2 cut(s) 94, 181
Sau96I GGNCC 2 cut(s) 10, 435
ScrFI CCNGG 2 cut(s) 300, 632
SduI GDGCHC 2 cut(s) 169, 333
SfcI CTRYAG 1 cut(s) 225
SinI GGWCC 2 cut(s) 10, 435
SmiMI CAYNNNNRTG 2 cut(s) 249, 654
SmlI CTYRAG 1 cut(s) 421
SmoI CTYRAG 1 cut(s) 421
Sse9I AATT 3 cut(s) 147, 310, 575
SseBI AGGCCT 1 cut(s) 630
SsiI CCGC 2 cut(s) 28, 35
SspMI CTAG 2 cut(s) 465, 688
SstI GAGCTC 2 cut(s) 169, 333
StuI AGGCCT 1 cut(s) 630
StyD4I CCNGG 2 cut(s) 298, 630
StyI CCWWGG 1 cut(s) 370
TaaI ACNGT 1 cut(s) 220
TaiI ACGT 2 cut(s) 135, 249
TaqI TCGA 2 cut(s) 5, 68
TasI AATT 3 cut(s) 147, 310, 575
TatI WGTACW 2 cut(s) 210, 605
TfiI GAWTC 1 cut(s) 552
Tru1I TTAA 3 cut(s) 150, 294, 672
Tru9I TTAA 3 cut(s) 150, 294, 672
TscAI CASTG 1 cut(s) 21
TseI GCWGC 3 cut(s) 172, 344, 613
TspDTI ATGAA 2 cut(s) 271, 470
TspRI CASTG 1 cut(s) 21
VpaK11BI GGWCC 2 cut(s) 10, 435
XagI CCTNNNNNAGG 1 cut(s) 369
XapI RAATTY 1 cut(s) 575
XceI RCATGY 1 cut(s) 659
XcmI CCANNNNNNNNNTGG 1 cut(s) 21
XspI CTAG 2 cut(s) 465, 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.