Prupe.6G337200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013395
Physical Location & Seq
Forward (+)
29263822 .. 29266487
2666 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G337200.2

Sequence Viewer

Length: 1047 bp
ATGGCTCTGTGGTCGTCGTCATCATCAACATCGTCACCAAAGGGGATAGTGATAACAGTGCCAGCGCTGGTTCTGGCGGCCTCAGTGGCCGCAATCTTCTTCTTCTTCCTCTTGTCCTCTTTGTCGTCGTCGTGCTCTTGTAGTGGCCGCGACGCCGGCGGTGCTCCTGCTAGTGCTACCGGCGGCGATGTTAGTGTAACACGTGCCGGCGATGGTGGTGGTACACATTTCAGCGTGTCAGAGGGCGGAGGAGAGTCAATATGGTCGTCGAAAGAGGATGTGGAGTGGGTGAAGGATCAGATCCGAGTGAATGGGTTGCATATGCAGGATAACGTGTTGCGTAAAGGCATTAACCCTCGTACCAGAGCTGAGCAGCTCCAAGATCTCTTACAATTCAAGGGTATATCTCACTATGAAGGACCTGAGTCGGAAAACCACACCGCCCTCCCGTGCCCTGGTGAGCTCCTTACCGAAGAGCACCACAGTAACTATGGTGAGCCTTGGGCAGGTGGGAGAGATGTTTTTGAGTTCCTCGCTCAGTCCACCCATCTGAAGCCTGAGTCACATGTCCTTGAGATTGGCTGTGGTACCCTCCGAGTCGGTTTGCATTTCATTCGCTATCTTAATGCTGGACACTTCCACTGTCTTGAAAGAGATGAGCTATCACTAATGGCTGCCTTTAGATATGAGCTTCCTTCCCAAGGTCTTCTGCACAAGCGCCCTTTGATTGTGAAAGGCGACAACATGGACTTCAGCAGATTTGGTTCAGAAGTTGTCTATGACTTGATCTATGCTAGTGCAGTGTTTCTTCATATGCCTGATAAGCTTGTCTGGGTTGGATTAGAGAGATTGACAAATAAATTGAAACCTTTTGATGGGCGGATCTTCGTGTCCCATAATATTAAGTTCTGTTCGCGATTGGGAGGAGACGAATGTGCAAAGCGGCTTAAGAGTTTGGGCCTGGAGTACATTGGAAAGCATACACATGATAGCTTGCTTTTTAATCACTATGAAATCTGGTTTGAGTTTAGGCGGTCCAAGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_23

Protein Analysis

349

Amino Acids

38.47

Weight (kDa)

6.38

Isoelectric Point (pI)

44.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013395)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05100
fragaria_vesca FvH4_6g03940
malus_domestica MD04G1217100.v1.1 MD12G1234100.v1.1
prunus_persica Prupe.6G337200_v2.0.a1 Prupe.6G337200_v2.0.a1
pyrus_communis pycom04g19320 pycom12g21650 pycom16g23200
rosa_chinensis RchiOBHm_Chr3g0452511
rosa_laevigata RLG00000025596
rosa_roxburghii Rroxscaffold_6G00429540
rosa_rugosa Rorug02G0641200
rosa_samantha Rh3AG043200 Rh3BG044900 Rh3CG043500 Rh3DG044300
rosa_wichuraiana Rw3G003350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 497
Acc36I ACCTGC 1 cut(s) 497
Acc65I GGTACC 1 cut(s) 587
AccB1I GGYRCC 1 cut(s) 587
AccII CGCG 2 cut(s) 150, 916
AclWI GGATC 3 cut(s) 295, 303, 890
AcoI YGGCCR 2 cut(s) 87, 145
AcuI CTGAAG 2 cut(s) 572, 736
AcvI CACGTG 1 cut(s) 203
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 4 cut(s) 223, 361, 589, 968
AfeI AGCGCT 1 cut(s) 66
AfiI CCNNNNNNNGG 4 cut(s) 455, 506, 701, 875
AflII CTTAAG 1 cut(s) 947
AflIII ACRYGT 3 cut(s) 200, 333, 565
AgsI TTSAA 3 cut(s) 397, 650, 865
AjnI CCWGG 2 cut(s) 454, 960
AluBI AGCT 7 cut(s) 368, 376, 463, 661, 691, 826, 993
AluI AGCT 7 cut(s) 368, 376, 463, 661, 691, 826, 993
Alw21I GWGCWC 4 cut(s) 137, 166, 465, 480
Alw26I GTCTC 1 cut(s) 921
AlwI GGATC 3 cut(s) 295, 303, 890
Aor51HI AGCGCT 1 cut(s) 66
AoxI GGCC 4 cut(s) 78, 87, 145, 958
ApeKI GCWGC 2 cut(s) 373, 674
Asp718I GGTACC 1 cut(s) 587
AspLEI GCGC 2 cut(s) 67, 720
AspS9I GGNCC 3 cut(s) 419, 958, 1035
AsuHPI GGTGA 4 cut(s) 27, 301, 470, 506
AvaII GGWCC 2 cut(s) 419, 1035
BaeGI GKGCMC 1 cut(s) 455
BaeI ACNNNNGTAYC 2 cut(s) 343, 376
BanI GGYRCC 1 cut(s) 587
BanII GRGCYC 1 cut(s) 465
BbrPI CACGTG 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 698
Bbv12I GWGCWC 4 cut(s) 137, 166, 465, 480
BbvI GCAGC 2 cut(s) 385, 661
BccI CCATC 3 cut(s) 206, 555, 869
BcgI CGANNNNNNTGC 2 cut(s) 596, 630
BciT130I CCWGG 2 cut(s) 456, 962
BcoDI GTCTC 1 cut(s) 921
BfaI CTAG 2 cut(s) 171, 795
BfoI RGCGCY 2 cut(s) 68, 721
BfrI CTTAAG 1 cut(s) 947
BfuAI ACCTGC 1 cut(s) 497
BglI GCCNNNNNGGC 1 cut(s) 86
BglII AGATCT 1 cut(s) 382
BisI GCNGC 7 cut(s) 78, 90, 148, 184, 374, 675, 944
BlpI GCTNAGC 1 cut(s) 369
BlsI GCNGC 7 cut(s) 79, 91, 149, 185, 375, 676, 945
Bme1390I CCNGG 2 cut(s) 456, 962
Bme18I GGWCC 2 cut(s) 419, 1035
BmgT120I GGNCC 3 cut(s) 419, 958, 1035
BmiI GGNNCC 1 cut(s) 589
BmrFI CCNGG 2 cut(s) 456, 962
BoxI GACNNNNGTC 1 cut(s) 424
BpiI GAAGAC 1 cut(s) 698
BpmI CTGGAG 1 cut(s) 983
Bpu1102I GCTNAGC 1 cut(s) 369
BpuEI CTTGAG 1 cut(s) 593
BsaAI YACGTR 1 cut(s) 203
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 4 cut(s) 454, 500, 700, 1038
Bsc4I CCNNNNNNNGG 4 cut(s) 455, 506, 701, 875
Bse118I RCCGGY 3 cut(s) 155, 179, 206
BseBI CCWGG 2 cut(s) 456, 962
BseDI CCNNGG 4 cut(s) 454, 500, 700, 1038
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 4 cut(s) 455, 506, 701, 875
BseMII CTCAG 5 cut(s) 96, 360, 414, 549, 551
BseRI GAGGAG 2 cut(s) 264, 939
BseSI GKGCMC 1 cut(s) 455
BseXI GCAGC 2 cut(s) 385, 661
BsgI GTGCAG 2 cut(s) 695, 819
Bsh1236I CGCG 2 cut(s) 150, 916
BshFI GGCC 4 cut(s) 80, 89, 147, 960
BshNI GGYRCC 1 cut(s) 587
BsiHKAI GWGCWC 4 cut(s) 137, 166, 465, 480
BsiSI CCGG 3 cut(s) 156, 180, 207
BslFI GGGAC 1 cut(s) 877
BslI CCNNNNNNNGG 4 cut(s) 455, 506, 701, 875
BsmAI GTCTC 1 cut(s) 921
BsmBI CGTCTC 1 cut(s) 921
BsmFI GGGAC 1 cut(s) 877
BsnI GGCC 4 cut(s) 80, 89, 147, 960
Bsp1286I GDGCHC 5 cut(s) 137, 166, 455, 465, 480
Bsp143I GATC 5 cut(s) 295, 300, 382, 786, 882
Bsp1720I GCTNAGC 1 cut(s) 369
Bsp68I TCGCGA 1 cut(s) 916
BspANI GGCC 4 cut(s) 80, 89, 147, 960
BspCNI CTCAG 5 cut(s) 95, 361, 415, 550, 550
BspFNI CGCG 2 cut(s) 150, 916
BspLI GGNNCC 1 cut(s) 589
BspMI ACCTGC 1 cut(s) 497
BspPI GGATC 3 cut(s) 295, 303, 890
BspQI GCTCTTC 1 cut(s) 468
BspT107I GGYRCC 1 cut(s) 587
BspTI CTTAAG 1 cut(s) 947
BsrFI RCCGGY 3 cut(s) 155, 179, 206
BssAI RCCGGY 3 cut(s) 155, 179, 206
BssECI CCNNGG 4 cut(s) 454, 500, 700, 1038
BssMI GATC 5 cut(s) 295, 300, 382, 786, 882
BssNI GRCGYC 1 cut(s) 153
BssT1I CCWWGG 3 cut(s) 500, 700, 1038
Bst2UI CCWGG 2 cut(s) 456, 962
Bst4CI ACNGT 3 cut(s) 58, 485, 644
Bst6I CTCTTC 1 cut(s) 468
BstACI GRCGYC 1 cut(s) 153
BstAFI CTTAAG 1 cut(s) 947
BstBAI YACGTR 1 cut(s) 203
BstC8I GCNNGC 4 cut(s) 63, 157, 208, 995
BstDEI CTNAG 5 cut(s) 82, 369, 423, 537, 558
BstENI CCTNNNNNAGG 2 cut(s) 504, 699
BstF5I GGATG 1 cut(s) 283
BstFNI CGCG 2 cut(s) 150, 916
BstH2I RGCGCY 2 cut(s) 68, 721
BstHHI GCGC 2 cut(s) 67, 720
BstKTI GATC 5 cut(s) 298, 303, 385, 789, 885
BstMAI GTCTC 1 cut(s) 921
BstMBI GATC 5 cut(s) 295, 300, 382, 786, 882
BstMWI GCNNNNNNNGC 4 cut(s) 86, 156, 161, 823
BstNI CCWGG 2 cut(s) 456, 962
BstNSI RCATGY 1 cut(s) 569
BstPAI GACNNNNGTC 1 cut(s) 424
BstSCI CCNGG 2 cut(s) 454, 960
BstSLI GKGCMC 1 cut(s) 455
BstUI CGCG 2 cut(s) 150, 916
BstV1I GCAGC 2 cut(s) 385, 661
BstV2I GAAGAC 1 cut(s) 698
BstX2I RGATCY 3 cut(s) 300, 382, 882
BstYI RGATCY 3 cut(s) 300, 382, 882
BsuRI GGCC 4 cut(s) 80, 89, 147, 960
BtgZI GCGATG 2 cut(s) 201, 225
BtsCI GGATG 1 cut(s) 283
BtsI GCAGTG 1 cut(s) 807
BtsIMutI CAGTG 4 cut(s) 63, 90, 640, 807
BtuMI TCGCGA 1 cut(s) 916
BveI ACCTGC 1 cut(s) 497
Cac8I GCNNGC 4 cut(s) 63, 157, 208, 995
CfoI GCGC 2 cut(s) 67, 720
Cfr10I RCCGGY 3 cut(s) 155, 179, 206
Cfr13I GGNCC 3 cut(s) 419, 958, 1035
CseI GACGC 1 cut(s) 161
Csp6I GTAC 4 cut(s) 222, 360, 588, 967
CviAII CATG 3 cut(s) 566, 745, 986
CviQI GTAC 4 cut(s) 222, 360, 588, 967
DdeI CTNAG 5 cut(s) 82, 369, 423, 537, 558
DpnI GATC 5 cut(s) 297, 302, 384, 788, 884
DpnII GATC 5 cut(s) 295, 300, 382, 786, 882
EaeI YGGCCR 2 cut(s) 87, 145
Eam1104I CTCTTC 1 cut(s) 468
EarI CTCTTC 1 cut(s) 468
EciI GGCGGA 2 cut(s) 261, 895
Ecl136II GAGCTC 1 cut(s) 463
Eco130I CCWWGG 3 cut(s) 500, 700, 1038
Eco24I GRGCYC 1 cut(s) 465
Eco47I GGWCC 2 cut(s) 419, 1035
Eco47III AGCGCT 1 cut(s) 66
Eco53kI GAGCTC 1 cut(s) 463
Eco57I CTGAAG 2 cut(s) 572, 736
Eco72I CACGTG 1 cut(s) 203
EcoICRI GAGCTC 1 cut(s) 463
EcoNI CCTNNNNNAGG 2 cut(s) 504, 699
EcoO109I RGGNCCY 1 cut(s) 419
EcoRII CCWGG 2 cut(s) 454, 960
EcoT14I CCWWGG 3 cut(s) 500, 700, 1038
EcoT38I GRGCYC 1 cut(s) 465
ErhI CCWWGG 3 cut(s) 500, 700, 1038
Esp3I CGTCTC 1 cut(s) 921
FaeI CATG 3 cut(s) 569, 748, 989
FaqI GGGAC 1 cut(s) 877
FatI CATG 3 cut(s) 565, 744, 985
FauNDI CATATG 2 cut(s) 321, 813
Fnu4HI GCNGC 7 cut(s) 78, 90, 148, 184, 374, 675, 944
FokI GGATG 1 cut(s) 290
FriOI GRGCYC 1 cut(s) 465
Fsp4HI GCNGC 7 cut(s) 78, 90, 148, 184, 374, 675, 944
FspBI CTAG 2 cut(s) 171, 795
GlaI GCGC 2 cut(s) 66, 719
GluI GCNGC 7 cut(s) 78, 90, 148, 184, 374, 675, 944
GsuI CTGGAG 1 cut(s) 983
HaeII RGCGCY 2 cut(s) 68, 721
HaeIII GGCC 4 cut(s) 80, 89, 147, 960
HapII CCGG 3 cut(s) 156, 180, 207
HgaI GACGC 1 cut(s) 161
HhaI GCGC 2 cut(s) 67, 720
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 3 cut(s) 569, 748, 989
Hin6I GCGC 2 cut(s) 65, 718
HinP1I GCGC 2 cut(s) 65, 718
HindIII AAGCTT 1 cut(s) 824
HinfI GANTC 4 cut(s) 254, 425, 560, 597
HpaII CCGG 3 cut(s) 156, 180, 207
HphI GGTGA 4 cut(s) 27, 301, 470, 506
Hpy166II GTNNAC 2 cut(s) 224, 543
Hpy188I TCNGA 7 cut(s) 241, 300, 305, 430, 552, 596, 769
Hpy188III TCNNGA 2 cut(s) 647, 915
Hpy8I GTNNAC 2 cut(s) 224, 543
Hpy99I CGWCG 5 cut(s) 19, 130, 133, 155, 271
HpyAV CCTTC 3 cut(s) 286, 410, 705
HpyCH4III ACNGT 3 cut(s) 58, 485, 644
HpyCH4IV ACGT 2 cut(s) 202, 333
HpyCH4V TGCA 6 cut(s) 319, 325, 607, 712, 800, 938
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 156, 161, 823
HpyF3I CTNAG 5 cut(s) 82, 369, 423, 537, 558
HpySE526I ACGT 2 cut(s) 202, 333
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 3 cut(s) 569, 748, 989
HspAI GCGC 2 cut(s) 65, 718
KpnI GGTACC 1 cut(s) 591
KroI GCCGGC 2 cut(s) 155, 206
KroNI GCCGGC 2 cut(s) 157, 208
Kzo9I GATC 5 cut(s) 295, 300, 382, 786, 882
LguI GCTCTTC 1 cut(s) 468
LmnI GCTCC 3 cut(s) 169, 381, 468
Lsp1109I GCAGC 2 cut(s) 385, 661
MaeI CTAG 2 cut(s) 171, 795
MaeII ACGT 2 cut(s) 202, 333
MaeIII GTNAC 4 cut(s) 33, 196, 485, 561
MalI GATC 5 cut(s) 297, 302, 384, 788, 884
MboI GATC 5 cut(s) 295, 300, 382, 786, 882
MboII GAAGA 8 cut(s) 88, 91, 94, 97, 485, 698, 800, 877
MflI RGATCY 3 cut(s) 300, 382, 882
MhlI GDGCHC 5 cut(s) 137, 166, 455, 465, 480
MluCI AATT 2 cut(s) 392, 860
MlyI GAGTC 4 cut(s) 263, 434, 569, 606
MmeI TCCRAC 2 cut(s) 408, 817
MreI CGCCGGCG 1 cut(s) 155
MroNI GCCGGC 2 cut(s) 155, 206
MseI TTAA 5 cut(s) 351, 624, 903, 948, 1002
MslI CAYNNNNRTG 1 cut(s) 984
MspCI CTTAAG 1 cut(s) 947
MspI CCGG 3 cut(s) 156, 180, 207
MspR9I CCNGG 2 cut(s) 456, 962
MvaI CCWGG 2 cut(s) 456, 962
MvnI CGCG 2 cut(s) 150, 916
MwoI GCNNNNNNNGC 4 cut(s) 86, 156, 161, 823
NaeI GCCGGC 2 cut(s) 157, 208
NdeI CATATG 2 cut(s) 321, 813
NdeII GATC 5 cut(s) 295, 300, 382, 786, 882
NgoMIV GCCGGC 2 cut(s) 155, 206
NlaIII CATG 3 cut(s) 569, 748, 989
NlaIV GGNNCC 1 cut(s) 589
NmuCI GTSAC 2 cut(s) 33, 561
NruI TCGCGA 1 cut(s) 916
NspI RCATGY 1 cut(s) 569
PaqCI CACCTGC 1 cut(s) 497
PciI ACATGT 1 cut(s) 565
PciSI GCTCTTC 1 cut(s) 468
PdiI GCCGGC 2 cut(s) 157, 208
PkrI GCNGC 7 cut(s) 79, 91, 149, 185, 375, 676, 945
PleI GAGTC 4 cut(s) 262, 433, 568, 605
PmaCI CACGTG 1 cut(s) 203
PmlI CACGTG 1 cut(s) 203
PpsI GAGTC 4 cut(s) 262, 433, 568, 605
Ppu21I YACGTR 1 cut(s) 203
PpuMI RGGWCCY 1 cut(s) 419
PscI ACATGT 1 cut(s) 565
PshAI GACNNNNGTC 1 cut(s) 424
Psp124BI GAGCTC 1 cut(s) 465
Psp5II RGGWCCY 1 cut(s) 419
Psp6I CCWGG 2 cut(s) 454, 960
PspCI CACGTG 1 cut(s) 203
PspGI CCWGG 2 cut(s) 454, 960
PspN4I GGNNCC 1 cut(s) 589
PspPI GGNCC 3 cut(s) 419, 958, 1035
PspPPI RGGWCCY 1 cut(s) 419
PsuI RGATCY 3 cut(s) 300, 382, 882
RruI TCGCGA 1 cut(s) 916
RsaI GTAC 4 cut(s) 223, 361, 589, 968
RsaNI GTAC 4 cut(s) 222, 360, 588, 967
RseI CAYNNNNRTG 1 cut(s) 984
SacI GAGCTC 1 cut(s) 465
SapI GCTCTTC 1 cut(s) 468
SaqAI TTAA 5 cut(s) 351, 624, 903, 948, 1002
SatI GCNGC 7 cut(s) 78, 90, 148, 184, 374, 675, 944
Sau3AI GATC 5 cut(s) 295, 300, 382, 786, 882
Sau96I GGNCC 3 cut(s) 419, 958, 1035
SchI GAGTC 4 cut(s) 263, 434, 569, 606
ScrFI CCNGG 2 cut(s) 456, 962
SduI GDGCHC 5 cut(s) 137, 166, 455, 465, 480
SfiI GGCCNNNNNGGCC 1 cut(s) 86
SgrAI CRCCGGYG 1 cut(s) 155
SinI GGWCC 2 cut(s) 419, 1035
SmiMI CAYNNNNRTG 1 cut(s) 984
SmlI CTYRAG 2 cut(s) 572, 947
SmoI CTYRAG 2 cut(s) 572, 947
Sse9I AATT 2 cut(s) 392, 860
SspI AATATT 1 cut(s) 901
SspMI CTAG 2 cut(s) 171, 795
SstI GAGCTC 1 cut(s) 465
StyD4I CCNGG 2 cut(s) 454, 960
StyI CCWWGG 3 cut(s) 500, 700, 1038
TaaI ACNGT 3 cut(s) 58, 485, 644
TaiI ACGT 2 cut(s) 205, 336
TaqI TCGA 1 cut(s) 269
TasI AATT 2 cut(s) 392, 860
TatI WGTACW 1 cut(s) 966
TauI GCSGC 5 cut(s) 80, 92, 150, 186, 946
Tru1I TTAA 5 cut(s) 351, 624, 903, 948, 1002
Tru9I TTAA 5 cut(s) 351, 624, 903, 948, 1002
TscAI CASTG 4 cut(s) 63, 90, 647, 807
TseFI GTSAC 2 cut(s) 33, 561
TseI GCWGC 2 cut(s) 373, 674
Tsp45I GTSAC 2 cut(s) 33, 561
TspDTI ATGAA 4 cut(s) 429, 601, 800, 1026
TspRI CASTG 4 cut(s) 63, 90, 647, 807
Vha464I CTTAAG 1 cut(s) 947
VpaK11BI GGWCC 2 cut(s) 419, 1035
XagI CCTNNNNNAGG 2 cut(s) 504, 699
XceI RCATGY 1 cut(s) 569
XcmI CCANNNNNNNNNTGG 1 cut(s) 488
XspI CTAG 2 cut(s) 171, 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.