AT3G05570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004125
Physical Location & Seq
Reverse (-)
1616102 .. 1617339
1238 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G05570.1

Sequence Viewer

Length: 273 bp
ATGGAGACGCAGAAAACTCAAGCTGAAAACCCGCCAAAACCGGCCACGTCTTCATGTCGAAAGAAGACAAAGGATGATGCCAATTTCCTAGAAGACGTCAAGGATCACATCGATGATTTCATTAATGCTTCCATGGATGATCACAAGAACTGTTTCAACAAAACCATCAAGAAGATGTTTGGGTTGTCAAAGGCTGTTGCGGATAAGCAGCAAAGTGAGGCTAAAGGAGGAGTCGAGAGTTATTTGCCTCTTCAGACAACAGTCTCAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.04

Weight (kDa)

6.09

Isoelectric Point (pI)

47.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 99
AciI CCGC 2 cut(s) 32, 200
AclWI GGATC 1 cut(s) 111
AcoI YGGCCR 1 cut(s) 42
AcuI CTGAAG 1 cut(s) 236
AcyI GRCGYC 1 cut(s) 96
AgsI TTSAA 1 cut(s) 157
AjiI CACGTC 1 cut(s) 48
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
Alw26I GTCTC 1 cut(s) 268
AlwI GGATC 1 cut(s) 111
AoxI GGCC 1 cut(s) 42
ApeKI GCWGC 1 cut(s) 208
AseI ATTAAT 1 cut(s) 123
Asp700I GAANNNNTTC 1 cut(s) 152
BbsI GAAGAC 3 cut(s) 42, 71, 99
BbvI GCAGC 1 cut(s) 220
BccI CCATC 1 cut(s) 173
BclI TGATCA 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 268
BfaI CTAG 1 cut(s) 89
BisI GCNGC 1 cut(s) 209
BlsI GCNGC 1 cut(s) 210
BmgBI CACGTC 1 cut(s) 48
BmsI GCATC 1 cut(s) 67
BoxI GACNNNNGTC 1 cut(s) 260
BpiI GAAGAC 3 cut(s) 42, 71, 99
Bsa29I ATCGAT 1 cut(s) 111
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 132
Bse118I RCCGGY 1 cut(s) 40
BseCI ATCGAT 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 2 cut(s) 79, 142
BseRI GAGGAG 1 cut(s) 243
BseXI GCAGC 1 cut(s) 220
BshFI GGCC 1 cut(s) 44
BshVI ATCGAT 1 cut(s) 111
BsiSI CCGG 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 268
BsnI GGCC 1 cut(s) 44
Bsp143I GATC 2 cut(s) 103, 139
Bsp19I CCATGG 1 cut(s) 132
BspACI CCGC 2 cut(s) 32, 200
BspANI GGCC 1 cut(s) 44
BspDI ATCGAT 1 cut(s) 111
BspPI GGATC 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 40
BssAI RCCGGY 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 2 cut(s) 103, 139
BssNI GRCGYC 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 132
Bst4CI ACNGT 2 cut(s) 152, 262
Bst6I CTCTTC 1 cut(s) 255
BstACI GRCGYC 1 cut(s) 96
BstDEI CTNAG 1 cut(s) 265
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 2 cut(s) 79, 142
BstKTI GATC 2 cut(s) 106, 142
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 2 cut(s) 103, 139
BstPAI GACNNNNGTC 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 220
BstV2I GAAGAC 3 cut(s) 42, 71, 99
Bsu15I ATCGAT 1 cut(s) 111
BsuRI GGCC 1 cut(s) 44
BsuTUI ATCGAT 1 cut(s) 111
BtgI CCRYGG 1 cut(s) 132
BtrI CACGTC 1 cut(s) 48
BtsCI GGATG 2 cut(s) 79, 142
Cfr10I RCCGGY 1 cut(s) 40
ClaI ATCGAT 1 cut(s) 111
CseI GACGC 1 cut(s) 16
CviAII CATG 2 cut(s) 54, 133
CviJI RGCY 4 cut(s) 23, 44, 194, 221
CviKI_1 RGCY 4 cut(s) 23, 44, 194, 221
DdeI CTNAG 1 cut(s) 265
DpnI GATC 2 cut(s) 105, 141
DpnII GATC 2 cut(s) 103, 139
EaeI YGGCCR 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 2 cut(s) 57, 136
FaiI YATR 2 cut(s) 55, 134
FatI CATG 2 cut(s) 53, 132
FauI CCCGC 1 cut(s) 39
FbaI TGATCA 1 cut(s) 139
Fnu4HI GCNGC 1 cut(s) 209
FokI GGATG 2 cut(s) 86, 149
Fsp4HI GCNGC 1 cut(s) 209
FspBI CTAG 1 cut(s) 89
GluI GCNGC 1 cut(s) 209
HaeIII GGCC 1 cut(s) 44
HapII CCGG 1 cut(s) 41
HgaI GACGC 1 cut(s) 16
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 2 cut(s) 57, 136
HinfI GANTC 1 cut(s) 231
HpaII CCGG 1 cut(s) 41
Hpy188I TCNGA 2 cut(s) 255, 268
Hpy188III TCNNGA 2 cut(s) 169, 235
HpyCH4III ACNGT 2 cut(s) 152, 262
HpyCH4IV ACGT 2 cut(s) 47, 96
HpyF3I CTNAG 1 cut(s) 265
HpySE526I ACGT 2 cut(s) 47, 96
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 2 cut(s) 57, 136
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 2 cut(s) 103, 139
LpnPI CCDG 1 cut(s) 54
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 1 cut(s) 67
MaeI CTAG 1 cut(s) 89
MaeII ACGT 2 cut(s) 47, 96
MalI GATC 2 cut(s) 105, 141
MboI GATC 2 cut(s) 103, 139
MboII GAAGA 5 cut(s) 42, 76, 104, 184, 242
MluCI AATT 1 cut(s) 82
MlyI GAGTC 1 cut(s) 240
MnlI CCTC 3 cut(s) 211, 221, 258
MroXI GAANNNNTTC 1 cut(s) 152
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 111
MspI CCGG 1 cut(s) 41
NcoI CCATGG 1 cut(s) 132
NdeII GATC 2 cut(s) 103, 139
NlaIII CATG 2 cut(s) 57, 136
PdmI GAANNNNTTC 1 cut(s) 152
PkrI GCNGC 1 cut(s) 210
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
PshAI GACNNNNGTC 1 cut(s) 260
PshBI ATTAAT 1 cut(s) 123
RseI CAYNNNNRTG 1 cut(s) 111
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 1 cut(s) 209
Sau3AI GATC 2 cut(s) 103, 139
SchI GAGTC 1 cut(s) 240
SetI ASST 3 cut(s) 25, 50, 99
SfaNI GCATC 1 cut(s) 67
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 18
SmoI CTYRAG 1 cut(s) 18
Sse9I AATT 1 cut(s) 82
SsiI CCGC 2 cut(s) 32, 200
SspMI CTAG 1 cut(s) 89
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 2 cut(s) 152, 262
TaiI ACGT 2 cut(s) 50, 99
TaqI TCGA 3 cut(s) 58, 111, 234
TasI AATT 1 cut(s) 82
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TseI GCWGC 1 cut(s) 208
TspDTI ATGAA 2 cut(s) 42, 109
VspI ATTAAT 1 cut(s) 123
XmnI GAANNNNTTC 1 cut(s) 152
XspI CTAG 1 cut(s) 89
ZraI GACGTC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.