Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005281.1

Orthogroup ID

OG0004125

Physical Location & Seq

Genomic Coordinates Reverse (-)

41371 .. 41777

Gene Structure 407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005281.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atggaatcgcagaaaagaggacttgaaaaacagcctgctggaacaatggctactccacctgctgctgcaacccccacatcttgccgaaagaagaagaatgaacaagccactttcttggaagatgtgaaggatcacattgatgagtttatccacgcttctatggacgaacacgtgtcttgcttcaagaagaccattgacaagatgtttaaaatgtcaaaggttgttgctgagaagaatgctgctgacgccaagggagttgagagttctcttccccttcgaacaacagtagcagactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

98

Amino Acids

10.78

Weight (kDa)

7.78

Isoelectric Point (pI)

55.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05570 AT4G39235 AT4G39235
fragaria_vesca	FvH4_2g08920 FvH4_4g27401
malus_domestica	MD05G1065400.v1.1 MD10G1075100.v1.1
prunus_persica	Prupe.8G064900_v2.0.a1 Prupe.8G064900_v2.0.a1 Prupe.8G096200_v2.0.a1 Prupe.8G096200_v2.0.a1 Prupe.8G096200_v2.0.a1 Prupe.8G096200_v2.0.a1
pyrus_communis	pycom05g05680 pycom10g05870
rosa_chinensis	RchiOBHm_Chr4g0435221 RchiOBHm_Chr6g0264531
rosa_laevigata	RLG00000014246
rosa_multiflora	Rmu_sc0000578.1_g000012 Rmu_sc0005281.1_g000012 Rmu_ssc0000339.1_g000028
rosa_roxburghii	Rroxscaffold_176G00431880 Rroxscaffold_5G00376430
rosa_rugosa	Rorug04G0283200.1 Rorug06G0015700
rosa_samantha	Rh4BG347000 Rh4CG361600 Rh4DG341400 Rh6AG133000 Rh6BG130600 Rh6CG128800 Rh6DG116000
rosa_wichuraiana	Rw0G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	67
Acc36I	ACCTGC	1 cut(s)	67
AclWI	GGATC	1 cut(s)	138
AcvI	CACGTG	1 cut(s)	172
AcyI	GRCGYC	1 cut(s)	246
AflIII	ACRYGT	2 cut(s)	169, 171
AgsI	TTSAA	2 cut(s)	26, 184
AlwI	GGATC	1 cut(s)	138
ApeKI	GCWGC	3 cut(s)	62, 65, 239
AsuII	TTCGAA	1 cut(s)	277
BbrPI	CACGTG	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	194
BbvI	GCAGC	3 cut(s)	49, 52, 226
BfuAI	ACCTGC	1 cut(s)	67
BisI	GCNGC	3 cut(s)	63, 66, 240
BlsI	GCNGC	3 cut(s)	64, 67, 241
BpiI	GAAGAC	1 cut(s)	194
Bpu14I	TTCGAA	1 cut(s)	277
BsaAI	YACGTR	1 cut(s)	172
BsaHI	GRCGYC	1 cut(s)	246
BsaJI	CCNNGG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	219
BseXI	GCAGC	3 cut(s)	49, 52, 226
BsmI	GAATGC	1 cut(s)	241
Bsp119I	TTCGAA	1 cut(s)	277
Bsp143I	GATC	1 cut(s)	130
BspCNI	CTCAG	1 cut(s)	220
BspMI	ACCTGC	1 cut(s)	67
BspPI	GGATC	1 cut(s)	138
BspT104I	TTCGAA	1 cut(s)	277
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	1 cut(s)	130
BssNI	GRCGYC	1 cut(s)	246
BssT1I	CCWWGG	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	286
Bst6I	CTCTTC	1 cut(s)	273
BstACI	GRCGYC	1 cut(s)	246
BstBAI	YACGTR	1 cut(s)	172
BstBI	TTCGAA	1 cut(s)	277
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	228
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstV1I	GCAGC	3 cut(s)	49, 52, 226
BstV2I	GAAGAC	1 cut(s)	194
BstXI	CCANNNNNNTGG	1 cut(s)	115
BveI	ACCTGC	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	36
CseI	GACGC	1 cut(s)	254
CviJI	RGCY	3 cut(s)	34, 50, 107
CviKI_1	RGCY	3 cut(s)	34, 50, 107
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
DraI	TTTAAA	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	249
Eco72I	CACGTG	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	249
FaiI	YATR	1 cut(s)	161
Fnu4HI	GCNGC	3 cut(s)	63, 66, 240
Fsp4HI	GCNGC	3 cut(s)	63, 66, 240
GluI	GCNGC	3 cut(s)	63, 66, 240
HgaI	GACGC	1 cut(s)	254
Hin1I	GRCGYC	1 cut(s)	246
HinfI	GANTC	1 cut(s)	5
Hpy188III	TCNNGA	1 cut(s)	184
HpyAV	CCTTC	2 cut(s)	121, 284
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	1 cut(s)	228
HpySE526I	ACGT	1 cut(s)	171
Hsp92I	GRCGYC	1 cut(s)	246
Kzo9I	GATC	1 cut(s)	130
LpnPI	CCDG	3 cut(s)	24, 48, 72
Lsp1109I	GCAGC	3 cut(s)	49, 52, 226
MaeII	ACGT	1 cut(s)	171
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	6 cut(s)	103, 106, 131, 199, 244, 260
MnlI	CCTC	1 cut(s)	11
MseI	TTAA	1 cut(s)	207
MslI	CAYNNNNRTG	1 cut(s)	138
Mva1269I	GAATGC	1 cut(s)	241
MwoI	GCNNNNNNNGC	1 cut(s)	245
NdeII	GATC	1 cut(s)	130
NspV	TTCGAA	1 cut(s)	277
PaqCI	CACCTGC	1 cut(s)	67
PctI	GAATGC	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	3 cut(s)	64, 67, 241
PmaCI	CACGTG	1 cut(s)	172
PmlI	CACGTG	1 cut(s)	172
Ppu21I	YACGTR	1 cut(s)	172
PspCI	CACGTG	1 cut(s)	172
PsrI	GAACNNNNNNTAC	2 cut(s)	34, 66
RseI	CAYNNNNRTG	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	3 cut(s)	63, 66, 240
Sau3AI	GATC	1 cut(s)	130
SetI	ASST	3 cut(s)	61, 174, 222
SfuI	TTCGAA	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	286
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	277
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseI	GCWGC	3 cut(s)	62, 65, 239
TspDTI	ATGAA	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.