Rh6DG116000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
15339672 .. 15341721
2050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG116000.1

Sequence Viewer

Length: 303 bp
ATGGAATCGCAGAAAAGAGAACTTGAAAAACAGCCTGCTGGAACAACGGCTACTCCACCTGCTGCTGCTGCTGCAACCCCCACATCTTGCCGAAAGAAGAAGAATGAACAAGCCACTTTCTTGGAGGATGTGAAGGATCACATTGATGAGTTTATCCACGCTTCTATGGACGAACACGTGTCTTGCTTCAAGAAGACCATTGACAAGATGTTTAAAATGTCAAAGGTTGTTGCTGAGAAGAATGCTGCTGACGCCAAGGGAGTTGAGAGTTCTCTTCCCCTTCGAACAACAGTAGCAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.97

Weight (kDa)

6.83

Isoelectric Point (pI)

53.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 67
Acc36I ACCTGC 1 cut(s) 67
AclWI GGATC 1 cut(s) 144
AcvI CACGTG 1 cut(s) 178
AcyI GRCGYC 1 cut(s) 252
AflIII ACRYGT 2 cut(s) 175, 177
AgsI TTSAA 2 cut(s) 26, 190
AlwI GGATC 1 cut(s) 144
ApeKI GCWGC 5 cut(s) 62, 65, 68, 71, 245
AsuII TTCGAA 1 cut(s) 283
BbrPI CACGTG 1 cut(s) 178
BbsI GAAGAC 1 cut(s) 200
BbvI GCAGC 5 cut(s) 49, 52, 55, 58, 232
BceAI ACGGC 1 cut(s) 63
BfuAI ACCTGC 1 cut(s) 67
BisI GCNGC 5 cut(s) 63, 66, 69, 72, 246
BlsI GCNGC 5 cut(s) 64, 67, 70, 73, 247
BpiI GAAGAC 1 cut(s) 200
Bpu14I TTCGAA 1 cut(s) 283
BsaAI YACGTR 1 cut(s) 178
BsaHI GRCGYC 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 255
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 225
BseXI GCAGC 5 cut(s) 49, 52, 55, 58, 232
BsmI GAATGC 1 cut(s) 247
Bsp119I TTCGAA 1 cut(s) 283
Bsp143I GATC 1 cut(s) 136
BspCNI CTCAG 1 cut(s) 226
BspMI ACCTGC 1 cut(s) 67
BspPI GGATC 1 cut(s) 144
BspT104I TTCGAA 1 cut(s) 283
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 1 cut(s) 136
BssNI GRCGYC 1 cut(s) 252
BssT1I CCWWGG 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 292
Bst6I CTCTTC 1 cut(s) 279
BstACI GRCGYC 1 cut(s) 252
BstBAI YACGTR 1 cut(s) 178
BstBI TTCGAA 1 cut(s) 283
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 1 cut(s) 234
BstF5I GGATG 1 cut(s) 133
BstKTI GATC 1 cut(s) 139
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 3 cut(s) 68, 71, 251
BstV1I GCAGC 5 cut(s) 49, 52, 55, 58, 232
BstV2I GAAGAC 1 cut(s) 200
BstXI CCANNNNNNTGG 1 cut(s) 121
BtsCI GGATG 1 cut(s) 133
BveI ACCTGC 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 36
CseI GACGC 1 cut(s) 260
CviJI RGCY 3 cut(s) 34, 50, 113
CviKI_1 RGCY 3 cut(s) 34, 50, 113
DdeI CTNAG 1 cut(s) 234
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
DraI TTTAAA 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco130I CCWWGG 1 cut(s) 255
Eco72I CACGTG 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaiI YATR 1 cut(s) 167
Fnu4HI GCNGC 5 cut(s) 63, 66, 69, 72, 246
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 5 cut(s) 63, 66, 69, 72, 246
GluI GCNGC 5 cut(s) 63, 66, 69, 72, 246
HgaI GACGC 1 cut(s) 260
Hin1I GRCGYC 1 cut(s) 252
HinfI GANTC 1 cut(s) 5
Hpy188III TCNNGA 1 cut(s) 190
HpyAV CCTTC 2 cut(s) 127, 290
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 1 cut(s) 74
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 71, 251
HpyF3I CTNAG 1 cut(s) 234
HpySE526I ACGT 1 cut(s) 177
Hsp92I GRCGYC 1 cut(s) 252
Kzo9I GATC 1 cut(s) 136
LpnPI CCDG 3 cut(s) 24, 48, 72
Lsp1109I GCAGC 5 cut(s) 49, 52, 55, 58, 232
MaeII ACGT 1 cut(s) 177
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 5 cut(s) 109, 112, 205, 250, 266
MnlI CCTC 1 cut(s) 118
MseI TTAA 1 cut(s) 213
MslI CAYNNNNRTG 1 cut(s) 144
Mva1269I GAATGC 1 cut(s) 247
MwoI GCNNNNNNNGC 3 cut(s) 68, 71, 251
NdeII GATC 1 cut(s) 136
NspV TTCGAA 1 cut(s) 283
PaqCI CACCTGC 1 cut(s) 67
PctI GAATGC 1 cut(s) 247
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 5 cut(s) 64, 67, 70, 73, 247
PmaCI CACGTG 1 cut(s) 178
PmlI CACGTG 1 cut(s) 178
Ppu21I YACGTR 1 cut(s) 178
PspCI CACGTG 1 cut(s) 178
PsrI GAACNNNNNNTAC 2 cut(s) 34, 66
RseI CAYNNNNRTG 1 cut(s) 144
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 5 cut(s) 63, 66, 69, 72, 246
Sau3AI GATC 1 cut(s) 136
SetI ASST 3 cut(s) 61, 180, 228
SfuI TTCGAA 1 cut(s) 283
SmiMI CAYNNNNRTG 1 cut(s) 144
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 292
TaiI ACGT 1 cut(s) 180
TaqI TCGA 1 cut(s) 283
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TseI GCWGC 5 cut(s) 62, 65, 68, 71, 245
TspDTI ATGAA 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.