Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004125

Physical Location & Seq

Genomic Coordinates Forward (+)

10631700 .. 10633903

Gene Structure 2204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1075100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGAATCACAGAAAACTCAACATGAGCCATCACCGGCTGCTGCAAACCCAGCCGCCACTTCATGTCGAAAGAAGAAGAACGAACAAGCCACTTTCTTGGAGGATTTGAAGGATCATATTGATGATTTTGTAAATGCATCTATGGATGAACACAAAACTTGCTTCAAGAAGACCATGAACAAGATGTTTGGAATGTCAAAGATCGTCTCTAAGAGGAGTGCTGACACCAAGGAAGTTGAGAGTACTCTGCCCCTTCAAACCACAGTGGCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

92

Amino Acids

10.19

Weight (kDa)

8.58

Isoelectric Point (pI)

61.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05570 AT4G39235 AT4G39235
fragaria_vesca	FvH4_2g08920 FvH4_4g27401
malus_domestica	MD05G1065400.v1.1 MD10G1075100.v1.1
prunus_persica	Prupe.8G064900_v2.0.a1 Prupe.8G064900_v2.0.a1 Prupe.8G096200_v2.0.a1 Prupe.8G096200_v2.0.a1 Prupe.8G096200_v2.0.a1 Prupe.8G096200_v2.0.a1
pyrus_communis	pycom05g05680 pycom10g05870
rosa_chinensis	RchiOBHm_Chr4g0435221 RchiOBHm_Chr6g0264531
rosa_laevigata	RLG00000014246
rosa_multiflora	Rmu_sc0000578.1_g000012 Rmu_sc0005281.1_g000012 Rmu_ssc0000339.1_g000028
rosa_roxburghii	Rroxscaffold_176G00431880 Rroxscaffold_5G00376430
rosa_rugosa	Rorug04G0283200.1 Rorug06G0015700
rosa_samantha	Rh4BG347000 Rh4CG361600 Rh4DG341400 Rh6AG133000 Rh6BG130600 Rh6CG128800 Rh6DG116000
rosa_wichuraiana	Rw0G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	120
AfaI	GTAC	1 cut(s)	244
AgsI	TTSAA	3 cut(s)	109, 166, 257
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	120
ApeKI	GCWGC	2 cut(s)	38, 41
AsuHPI	GGTGA	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	176
BbvI	GCAGC	2 cut(s)	25, 28
BccI	CCATC	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	211
BisI	GCNGC	3 cut(s)	39, 42, 54
BlsI	GCNGC	3 cut(s)	40, 43, 55
BmcAI	AGTACT	1 cut(s)	244
BmsI	GCATC	1 cut(s)	146
BpiI	GAAGAC	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	228
Bse118I	RCCGGY	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	229
BseXI	GCAGC	2 cut(s)	25, 28
BseYI	CCCAGC	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	211
BsmBI	CGTCTC	1 cut(s)	211
Bsp143I	GATC	2 cut(s)	112, 201
BspACI	CCGC	1 cut(s)	54
BspPI	GGATC	1 cut(s)	120
BsrFI	RCCGGY	1 cut(s)	34
BssAI	RCCGGY	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	2 cut(s)	112, 201
BssT1I	CCWWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	265
BstDEI	CTNAG	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	151
BstKTI	GATC	2 cut(s)	115, 204
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	2 cut(s)	112, 201
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstV1I	GCAGC	2 cut(s)	25, 28
BstV2I	GAAGAC	1 cut(s)	176
BstXI	CCANNNNNNTGG	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	270
Cfr10I	RCCGGY	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	243
CviAII	CATG	3 cut(s)	23, 63, 175
CviJI	RGCY	4 cut(s)	28, 38, 53, 89
CviKI_1	RGCY	4 cut(s)	28, 38, 53, 89
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	2 cut(s)	114, 203
DpnII	GATC	2 cut(s)	112, 201
Eco130I	CCWWGG	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	228
EcoT22I	ATGCAT	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	3 cut(s)	26, 66, 178
FaiI	YATR	5 cut(s)	24, 64, 117, 143, 176
FatI	CATG	3 cut(s)	22, 62, 174
Fnu4HI	GCNGC	3 cut(s)	39, 42, 54
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	3 cut(s)	39, 42, 54
GluI	GCNGC	3 cut(s)	39, 42, 54
GsaI	CCCAGC	1 cut(s)	53
HapII	CCGG	1 cut(s)	35
Hin1II	CATG	3 cut(s)	26, 66, 178
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	1 cut(s)	24
Hpy188III	TCNNGA	1 cut(s)	166
HpyAV	CCTTC	2 cut(s)	103, 263
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4V	TGCA	2 cut(s)	44, 137
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	1 cut(s)	210
Hsp92II	CATG	3 cut(s)	26, 66, 178
Kzo9I	GATC	2 cut(s)	112, 201
LpnPI	CCDG	2 cut(s)	48, 63
Lsp1109I	GCAGC	2 cut(s)	25, 28
LweI	GCATC	1 cut(s)	146
MalI	GATC	2 cut(s)	114, 203
MboI	GATC	2 cut(s)	112, 201
MboII	GAAGA	3 cut(s)	85, 88, 181
MnlI	CCTC	2 cut(s)	94, 207
Mph1103I	ATGCAT	1 cut(s)	139
MslI	CAYNNNNRTG	1 cut(s)	120
MspI	CCGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	2 cut(s)	112, 201
NlaIII	CATG	3 cut(s)	26, 66, 178
NsiI	ATGCAT	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	3 cut(s)	40, 43, 55
PspFI	CCCAGC	1 cut(s)	49
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
RseI	CAYNNNNRTG	1 cut(s)	120
SatI	GCNGC	3 cut(s)	39, 42, 54
Sau3AI	GATC	2 cut(s)	112, 201
ScaI	AGTACT	1 cut(s)	244
SfaNI	GCATC	1 cut(s)	146
SmiMI	CAYNNNNRTG	1 cut(s)	120
SsiI	CCGC	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	265
TaqI	TCGA	1 cut(s)	67
TatI	WGTACW	1 cut(s)	242
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	5
TscAI	CASTG	1 cut(s)	270
TseI	GCWGC	2 cut(s)	38, 41
TspDTI	ATGAA	3 cut(s)	51, 162, 191
TspRI	CASTG	1 cut(s)	270
ZrmI	AGTACT	1 cut(s)	244
Zsp2I	ATGCAT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.