pycom10g05870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0004125
Physical Location & Seq
Forward (+)
6511368 .. 6511752
385 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g05870.1

Sequence Viewer

Length: 276 bp
ATGGAATCACAGAAAACTCAACATGAGCCATCACCGGCTGCTGCAAACCCAGCCGCCACTTCATGTCGAAAGAAGAAGAACGAACAAGCCACTTTCTTGGAGGATTTGAAGGATCATATTGATGATTTTGTAAATGCATCTATGGATGAACACAAAACTTGCTTCAAGAAGACCATGAACAAGATGTTTGGATTGTCAAAGATCGTCTCTGAGAGGAGCGCTGACACCAAGGAAGTTGAGAGTACTCTGCCCCTTCAAACCACAGTGGCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.17

Weight (kDa)

6.82

Isoelectric Point (pI)

55.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 54
AclWI GGATC 1 cut(s) 120
AfaI GTAC 1 cut(s) 244
AfeI AGCGCT 1 cut(s) 220
AgsI TTSAA 3 cut(s) 109, 166, 257
Alw26I GTCTC 1 cut(s) 211
AlwI GGATC 1 cut(s) 120
Aor51HI AGCGCT 1 cut(s) 220
ApeKI GCWGC 2 cut(s) 38, 41
AspLEI GCGC 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 24
BbsI GAAGAC 1 cut(s) 176
BbvI GCAGC 2 cut(s) 25, 28
BccI CCATC 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 211
BfoI RGCGCY 1 cut(s) 222
BisI GCNGC 3 cut(s) 39, 42, 54
BlsI GCNGC 3 cut(s) 40, 43, 55
BmcAI AGTACT 1 cut(s) 244
BmsI GCATC 1 cut(s) 146
BpiI GAAGAC 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 228
Bse118I RCCGGY 1 cut(s) 34
BseDI CCNNGG 1 cut(s) 228
BseGI GGATG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 201
BseRI GAGGAG 1 cut(s) 229
BseXI GCAGC 2 cut(s) 25, 28
BseYI CCCAGC 1 cut(s) 49
BsiSI CCGG 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 211
BsmBI CGTCTC 1 cut(s) 211
Bsp143I GATC 2 cut(s) 112, 201
BspACI CCGC 1 cut(s) 54
BspCNI CTCAG 1 cut(s) 202
BspPI GGATC 1 cut(s) 120
BsrFI RCCGGY 1 cut(s) 34
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 2 cut(s) 112, 201
BssT1I CCWWGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 265
BstDEI CTNAG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 151
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 2 cut(s) 115, 204
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 2 cut(s) 112, 201
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstV1I GCAGC 2 cut(s) 25, 28
BstV2I GAAGAC 1 cut(s) 176
BstXI CCANNNNNNTGG 1 cut(s) 97
BtsCI GGATG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 270
CfoI GCGC 1 cut(s) 221
Cfr10I RCCGGY 1 cut(s) 34
Csp6I GTAC 1 cut(s) 243
CviAII CATG 3 cut(s) 23, 63, 175
CviJI RGCY 4 cut(s) 28, 38, 53, 89
CviKI_1 RGCY 4 cut(s) 28, 38, 53, 89
CviQI GTAC 1 cut(s) 243
DdeI CTNAG 1 cut(s) 210
DpnI GATC 2 cut(s) 114, 203
DpnII GATC 2 cut(s) 112, 201
Eco130I CCWWGG 1 cut(s) 228
Eco47III AGCGCT 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 228
EcoT22I ATGCAT 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 228
Esp3I CGTCTC 1 cut(s) 211
FaeI CATG 3 cut(s) 26, 66, 178
FaiI YATR 5 cut(s) 24, 64, 117, 143, 176
FatI CATG 3 cut(s) 22, 62, 174
Fnu4HI GCNGC 3 cut(s) 39, 42, 54
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 3 cut(s) 39, 42, 54
GlaI GCGC 1 cut(s) 220
GluI GCNGC 3 cut(s) 39, 42, 54
GsaI CCCAGC 1 cut(s) 53
HaeII RGCGCY 1 cut(s) 222
HapII CCGG 1 cut(s) 35
HhaI GCGC 1 cut(s) 221
Hin1II CATG 3 cut(s) 26, 66, 178
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 35
HphI GGTGA 1 cut(s) 24
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 1 cut(s) 166
HpyAV CCTTC 2 cut(s) 103, 263
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 2 cut(s) 44, 137
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 210
Hsp92II CATG 3 cut(s) 26, 66, 178
HspAI GCGC 1 cut(s) 219
Kzo9I GATC 2 cut(s) 112, 201
LmnI GCTCC 1 cut(s) 216
LpnPI CCDG 2 cut(s) 48, 63
Lsp1109I GCAGC 2 cut(s) 25, 28
LweI GCATC 1 cut(s) 146
MalI GATC 2 cut(s) 114, 203
MboI GATC 2 cut(s) 112, 201
MboII GAAGA 3 cut(s) 85, 88, 181
MnlI CCTC 2 cut(s) 94, 207
Mph1103I ATGCAT 1 cut(s) 139
MslI CAYNNNNRTG 1 cut(s) 120
MspI CCGG 1 cut(s) 35
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeII GATC 2 cut(s) 112, 201
NlaIII CATG 3 cut(s) 26, 66, 178
NsiI ATGCAT 1 cut(s) 139
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 3 cut(s) 40, 43, 55
PspFI CCCAGC 1 cut(s) 49
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
RseI CAYNNNNRTG 1 cut(s) 120
SatI GCNGC 3 cut(s) 39, 42, 54
Sau3AI GATC 2 cut(s) 112, 201
ScaI AGTACT 1 cut(s) 244
SfaNI GCATC 1 cut(s) 146
SmiMI CAYNNNNRTG 1 cut(s) 120
SsiI CCGC 1 cut(s) 54
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 265
TaqI TCGA 1 cut(s) 67
TatI WGTACW 1 cut(s) 242
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 1 cut(s) 5
TscAI CASTG 1 cut(s) 270
TseI GCWGC 2 cut(s) 38, 41
TspDTI ATGAA 3 cut(s) 51, 162, 191
TspRI CASTG 1 cut(s) 270
ZrmI AGTACT 1 cut(s) 244
Zsp2I ATGCAT 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.