Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000578.1

Orthogroup ID

OG0004125

Physical Location & Seq

Genomic Coordinates Reverse (-)

35617 .. 36026

Gene Structure 410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000578.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atggaatcgcagaaaagagaacttgaaaaacagcctgctggaacaacggctactccacctgctgctgctgcaacccccacatcttgccgaaagaagaagaatgaacaagccactttcttggaagatgtgaaggatcacattgatgagtttatccacgcttctatggacgaacacgtgtcttgcttcaagaagaccattgacaagatgtttaaaatgtcaaaggttgttgctgagaagaatgctgctgacgccaagggagttgagagttctcttccccttcgaacaacagtagcagactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

10.89

Weight (kDa)

6.83

Isoelectric Point (pI)

54.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05570 AT4G39235 AT4G39235
fragaria_vesca	FvH4_2g08920 FvH4_4g27401
malus_domestica	MD05G1065400.v1.1 MD10G1075100.v1.1
prunus_persica	Prupe.8G064900_v2.0.a1 Prupe.8G064900_v2.0.a1 Prupe.8G096200_v2.0.a1 Prupe.8G096200_v2.0.a1 Prupe.8G096200_v2.0.a1 Prupe.8G096200_v2.0.a1
pyrus_communis	pycom05g05680 pycom10g05870
rosa_chinensis	RchiOBHm_Chr4g0435221 RchiOBHm_Chr6g0264531
rosa_laevigata	RLG00000014246
rosa_multiflora	Rmu_sc0000578.1_g000012 Rmu_sc0005281.1_g000012 Rmu_ssc0000339.1_g000028
rosa_roxburghii	Rroxscaffold_176G00431880 Rroxscaffold_5G00376430
rosa_rugosa	Rorug04G0283200.1 Rorug06G0015700
rosa_samantha	Rh4BG347000 Rh4CG361600 Rh4DG341400 Rh6AG133000 Rh6BG130600 Rh6CG128800 Rh6DG116000
rosa_wichuraiana	Rw0G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	67
Acc36I	ACCTGC	1 cut(s)	67
AclWI	GGATC	1 cut(s)	141
AcvI	CACGTG	1 cut(s)	175
AcyI	GRCGYC	1 cut(s)	249
AflIII	ACRYGT	2 cut(s)	172, 174
AgsI	TTSAA	2 cut(s)	26, 187
AlwI	GGATC	1 cut(s)	141
ApeKI	GCWGC	4 cut(s)	62, 65, 68, 242
AsuII	TTCGAA	1 cut(s)	280
BbrPI	CACGTG	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	197
BbvI	GCAGC	4 cut(s)	49, 52, 55, 229
BceAI	ACGGC	1 cut(s)	63
BfuAI	ACCTGC	1 cut(s)	67
BisI	GCNGC	4 cut(s)	63, 66, 69, 243
BlsI	GCNGC	4 cut(s)	64, 67, 70, 244
BpiI	GAAGAC	1 cut(s)	197
Bpu14I	TTCGAA	1 cut(s)	280
BsaAI	YACGTR	1 cut(s)	175
BsaHI	GRCGYC	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	252
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
BseDI	CCNNGG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	222
BseXI	GCAGC	4 cut(s)	49, 52, 55, 229
BsmI	GAATGC	1 cut(s)	244
Bsp119I	TTCGAA	1 cut(s)	280
Bsp143I	GATC	1 cut(s)	133
BspCNI	CTCAG	1 cut(s)	223
BspMI	ACCTGC	1 cut(s)	67
BspPI	GGATC	1 cut(s)	141
BspT104I	TTCGAA	1 cut(s)	280
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	1 cut(s)	133
BssNI	GRCGYC	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	276
BstACI	GRCGYC	1 cut(s)	249
BstBAI	YACGTR	1 cut(s)	175
BstBI	TTCGAA	1 cut(s)	280
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	231
BstKTI	GATC	1 cut(s)	136
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 248
BstV1I	GCAGC	4 cut(s)	49, 52, 55, 229
BstV2I	GAAGAC	1 cut(s)	197
BstXI	CCANNNNNNTGG	1 cut(s)	118
BveI	ACCTGC	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	36
CseI	GACGC	1 cut(s)	257
CviJI	RGCY	3 cut(s)	34, 50, 110
CviKI_1	RGCY	3 cut(s)	34, 50, 110
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
DraI	TTTAAA	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	252
Eco72I	CACGTG	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaiI	YATR	1 cut(s)	164
Fnu4HI	GCNGC	4 cut(s)	63, 66, 69, 243
Fsp4HI	GCNGC	4 cut(s)	63, 66, 69, 243
GluI	GCNGC	4 cut(s)	63, 66, 69, 243
HgaI	GACGC	1 cut(s)	257
Hin1I	GRCGYC	1 cut(s)	249
HinfI	GANTC	1 cut(s)	5
Hpy188III	TCNNGA	1 cut(s)	187
HpyAV	CCTTC	2 cut(s)	124, 287
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 248
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	249
Kzo9I	GATC	1 cut(s)	133
LpnPI	CCDG	3 cut(s)	24, 48, 72
Lsp1109I	GCAGC	4 cut(s)	49, 52, 55, 229
MaeII	ACGT	1 cut(s)	174
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	6 cut(s)	106, 109, 134, 202, 247, 263
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	141
Mva1269I	GAATGC	1 cut(s)	244
MwoI	GCNNNNNNNGC	2 cut(s)	68, 248
NdeII	GATC	1 cut(s)	133
NspV	TTCGAA	1 cut(s)	280
PaqCI	CACCTGC	1 cut(s)	67
PctI	GAATGC	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	4 cut(s)	64, 67, 70, 244
PmaCI	CACGTG	1 cut(s)	175
PmlI	CACGTG	1 cut(s)	175
Ppu21I	YACGTR	1 cut(s)	175
PspCI	CACGTG	1 cut(s)	175
PsrI	GAACNNNNNNTAC	2 cut(s)	34, 66
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	4 cut(s)	63, 66, 69, 243
Sau3AI	GATC	1 cut(s)	133
SetI	ASST	3 cut(s)	61, 177, 225
SfuI	TTCGAA	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	141
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	1 cut(s)	280
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TseI	GCWGC	4 cut(s)	62, 65, 68, 242
TspDTI	ATGAA	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.