Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004125

Physical Location & Seq

Genomic Coordinates Reverse (-)

9580361 .. 9582733

Gene Structure 2373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G064900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGAATCACCCAAAAGTCAACTTGAAAACAAGCCCTCGCCTGCTGCGGCAACCCCACCGATCACTTCATGTCGAAGAAAGAAGAAGGATGATGCCAACTTCTTGGAGGATTTGAAGGACCATATTGATGAATTTGTCAATGCATCTATGGATGAACACAAAACTTGTTTCAAGAAGACTATGCAGAAGATGTTTGGAATGTCAAAGATTGTTGCTGAGAGGAGTTCTGGTACCAAGGAAGTTGAAAGTTCTTTGCCTCTTAGAACAACAGTGGCAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

94

Amino Acids

10.42

Weight (kDa)

7.77

Isoelectric Point (pI)

64.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05570 AT4G39235 AT4G39235
fragaria_vesca	FvH4_2g08920 FvH4_4g27401
malus_domestica	MD05G1065400.v1.1 MD10G1075100.v1.1
prunus_persica	Prupe.8G064900_v2.0.a1 Prupe.8G064900_v2.0.a1 Prupe.8G096200_v2.0.a1 Prupe.8G096200_v2.0.a1 Prupe.8G096200_v2.0.a1 Prupe.8G096200_v2.0.a1
pyrus_communis	pycom05g05680 pycom10g05870
rosa_chinensis	RchiOBHm_Chr4g0435221 RchiOBHm_Chr6g0264531
rosa_laevigata	RLG00000014246
rosa_multiflora	Rmu_sc0000578.1_g000012 Rmu_sc0005281.1_g000012 Rmu_ssc0000339.1_g000028
rosa_roxburghii	Rroxscaffold_176G00431880 Rroxscaffold_5G00376430
rosa_rugosa	Rorug04G0283200.1 Rorug06G0015700
rosa_samantha	Rh4BG347000 Rh4CG361600 Rh4DG341400 Rh6AG133000 Rh6BG130600 Rh6CG128800 Rh6DG116000
rosa_wichuraiana	Rw0G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	230
AccB1I	GGYRCC	1 cut(s)	230
AciI	CCGC	1 cut(s)	47
AcsI	RAATTY	1 cut(s)	131
AfaI	GTAC	1 cut(s)	232
AgsI	TTSAA	4 cut(s)	26, 115, 172, 245
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	1 cut(s)	131
Asp718I	GGTACC	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	118
BanI	GGYRCC	1 cut(s)	230
BbsI	GAAGAC	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	280
BisI	GCNGC	2 cut(s)	45, 48
BlsI	GCNGC	2 cut(s)	46, 49
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	232
BmsI	GCATC	2 cut(s)	82, 152
BpiI	GAAGAC	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	234
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	2 cut(s)	94, 157
BseMII	CTCAG	1 cut(s)	207
BseRI	GAGGAG	1 cut(s)	235
BseXI	GCAGC	1 cut(s)	31
BshNI	GGYRCC	1 cut(s)	230
Bsp143I	GATC	1 cut(s)	60
BspACI	CCGC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	232
BspT107I	GGYRCC	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	2 cut(s)	216, 260
BstF5I	GGATG	2 cut(s)	94, 157
BstKTI	GATC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	1 cut(s)	182
BstXI	CCANNNNNNTGG	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	94, 157
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	1 cut(s)	69
CviJI	RGCY	1 cut(s)	34
CviKI_1	RGCY	1 cut(s)	34
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	2 cut(s)	216, 260
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
Eco130I	CCWWGG	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	234
EcoT22I	ATGCAT	1 cut(s)	145
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	1 cut(s)	72
FaiI	YATR	4 cut(s)	70, 123, 149, 182
FatI	CATG	1 cut(s)	68
Fnu4HI	GCNGC	2 cut(s)	45, 48
FokI	GGATG	2 cut(s)	101, 164
Fsp4HI	GCNGC	2 cut(s)	45, 48
FspBI	CTAG	1 cut(s)	280
GluI	GCNGC	2 cut(s)	45, 48
Hin1II	CATG	1 cut(s)	72
HincII	GTYRAC	1 cut(s)	20
HindII	GTYRAC	1 cut(s)	20
HinfI	GANTC	1 cut(s)	5
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	1 cut(s)	20
HpyAV	CCTTC	2 cut(s)	79, 109
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4V	TGCA	2 cut(s)	143, 184
HpyF3I	CTNAG	2 cut(s)	216, 260
Hsp92II	CATG	1 cut(s)	72
KpnI	GGTACC	1 cut(s)	234
Kzo9I	GATC	1 cut(s)	60
LpnPI	CCDG	2 cut(s)	54, 213
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	2 cut(s)	82, 152
MaeI	CTAG	1 cut(s)	280
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	4 cut(s)	87, 94, 187, 199
MluCI	AATT	1 cut(s)	131
MnlI	CCTC	4 cut(s)	46, 100, 213, 267
Mph1103I	ATGCAT	1 cut(s)	145
MslI	CAYNNNNRTG	1 cut(s)	126
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	1 cut(s)	72
NlaIV	GGNNCC	1 cut(s)	232
NsiI	ATGCAT	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	46, 49
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	1 cut(s)	118
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
RseI	CAYNNNNRTG	1 cut(s)	126
SatI	GCNGC	2 cut(s)	45, 48
Sau3AI	GATC	1 cut(s)	60
Sau96I	GGNCC	1 cut(s)	118
SfaNI	GCATC	2 cut(s)	82, 152
SinI	GGWCC	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	126
Sse9I	AATT	1 cut(s)	131
SsiI	CCGC	1 cut(s)	47
SspMI	CTAG	1 cut(s)	280
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	271
TaqI	TCGA	1 cut(s)	73
TasI	AATT	1 cut(s)	131
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	5
TscAI	CASTG	1 cut(s)	276
TseI	GCWGC	1 cut(s)	44
TspDTI	ATGAA	3 cut(s)	57, 144, 168
TspRI	CASTG	1 cut(s)	276
VpaK11BI	GGWCC	1 cut(s)	118
XapI	RAATTY	1 cut(s)	131
XspI	CTAG	1 cut(s)	280
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.